CmoCh20G011370 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G011370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	WRKY domain-containing protein
Location	Cmo_Chr20: 11071328 .. 11071594 (+)
RNA-Seq Expression	CmoCh20G011370
Synteny	CmoCh20G011370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCTTCCCTTATGAAGATCCAAACCCTAACCCTAACCCTAATTTCACGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTCGGCGATGACGATAGCTACGTTGACCAACTCGCCTCCTCGTCTTCGGAGAAGATCACCGGCGTGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGCTTAA

mRNA sequence

ATGGCGAGCTTCCCTTATGAAGATCCAAACCCTAACCCTAACCCTAATTTCACGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTCGGCGATGACGATAGCTACGTTGACCAACTCGCCTCCTCGTCTTCGGAGAAGATCACCGGCGTGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGCTTAA

Coding sequence (CDS)

ATGGCGAGCTTCCCTTATGAAGATCCAAACCCTAACCCTAACCCTAATTTCACGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTCGGCGATGACGATAGCTACGTTGACCAACTCGCCTCCTCGTCTTCGGAGAAGATCACCGGCGTGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGCTTAA

Protein sequence

MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGVDSGGSSVAVDSGSSFVVSSEPSPSMQVA

Homology

[Close]

BLAST of CmoCh20G011370 vs. ExPASy TrEMBL
Match: A0A6J1EIN3 (probable WRKY transcription factor 51 OS=Cucurbita moschata OX=3662 GN=LOC111434887 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60
          MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV
Sbjct: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60

Query: 61 DSGGSSVAVDSGSSFVVSSEPSPSMQ 87
          DSGGSSVAVDSGSSFVVSSEPSPS++
Sbjct: 61 DSGGSSVAVDSGSSFVVSSEPSPSIR 86

[Close]

BLAST of CmoCh20G011370 vs. ExPASy TrEMBL
Match: A0A6J1I2S4 (probable WRKY transcription factor 51 OS=Cucurbita maxima OX=3661 GN=LOC111470401 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.1e-36
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60
          MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKI GV
Sbjct: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKIIGV 60

Query: 61 DSGGSSVAVDSGSSFVVSSEPSPSMQ 87
          DSGGSSVAVDSGSSFVVSSEPSPS++
Sbjct: 61 DSGGSSVAVDSGSSFVVSSEPSPSIR 86

[Close]

BLAST of CmoCh20G011370 vs. ExPASy TrEMBL
Match: A0A6J1E1D1 (probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC111025535 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDD--SYVDQLASS-----S 60
          MASFP +DPNPNPNPN+T F PILDP+ FFDFDLS++L+ +DD  +  DQ ASS     S
Sbjct: 1  MASFPQQDPNPNPNPNYTHFPPILDPSVFFDFDLSDYLMLNDDNINIDDQAASSSPSIAS 60

Query: 61 SEKITGVDSGGSSVAVDSGSSFVVSSEPSPSM 86
          SEKITGVDSG S   VDSGSS V SS  + SM
Sbjct: 61 SEKITGVDSGNSCAVVDSGSSTVASSGATSSM 92

[Close]

BLAST of CmoCh20G011370 vs. ExPASy TrEMBL
Match: A0A6J1DV80 (probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC111024371 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDD--SYVDQLASS-----S 60
          MASFP +DPNPNPNPN+T F PILDP+ FFDFDLS++L+ +DD  +  DQ ASS     S
Sbjct: 1  MASFPQQDPNPNPNPNYTHFPPILDPSVFFDFDLSDYLMLNDDNINIDDQAASSSPSIAS 60

Query: 61 SEKITGVDSGGSSVAVDSGSSFVVSSEPSPSM 86
          SEKITGVDSG S   VDSGSS V SS  + SM
Sbjct: 61 SEKITGVDSGNSCAVVDSGSSTVASSGATSSM 92

[Close]

BLAST of CmoCh20G011370 vs. ExPASy TrEMBL
Match: A0A0A0LM41 (WRKY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G297180 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-16
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNP---NFTQFSPILDPASFFDFDLSNFLV-GDDDS-YVDQLASS--- 60
          MASFPYED N NPNP   N+T F PILDPASFFDF+LS+FL+ GDD++  VDQ+ASS   
Sbjct: 1  MASFPYEDSNLNPNPNPNNYTHFPPILDPASFFDFELSDFLLFGDDNNIVVDQVASSSPS 60

Query: 61 --SSEKIT--GVDSGGSSVAVDSGSSFVVSSEPSPS 85
            SSEKIT  GVDSGGSS  +D+GSS VVSS  + S
Sbjct: 61 MTSSEKITSGGVDSGGSSTVIDTGSSVVVSSSGARS 96

[Close]

BLAST of CmoCh20G011370 vs. NCBI nr
Match: KAG6571381.1 (hypothetical protein SDJN03_30296, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 3.8e-38
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60
          MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV
Sbjct: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60

Query: 61 DSGGSSVAVDSGSSFVVSSEPSPSMQVA 89
          DSGGSSVAVDSGSSFVVSSEPSPSMQVA
Sbjct: 61 DSGGSSVAVDSGSSFVVSSEPSPSMQVA 88

[Close]

BLAST of CmoCh20G011370 vs. NCBI nr
Match: XP_022927982.1 (probable WRKY transcription factor 51 [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60
          MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV
Sbjct: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60

Query: 61 DSGGSSVAVDSGSSFVVSSEPSPSMQ 87
          DSGGSSVAVDSGSSFVVSSEPSPS++
Sbjct: 61 DSGGSSVAVDSGSSFVVSSEPSPSIR 86

[Close]

BLAST of CmoCh20G011370 vs. NCBI nr
Match: XP_022971732.1 (probable WRKY transcription factor 51 [Cucurbita maxima])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60
          MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKI GV
Sbjct: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKIIGV 60

Query: 61 DSGGSSVAVDSGSSFVVSSEPSPSMQ 87
          DSGGSSVAVDSGSSFVVSSEPSPS++
Sbjct: 61 DSGGSSVAVDSGSSFVVSSEPSPSIR 86

[Close]

BLAST of CmoCh20G011370 vs. NCBI nr
Match: XP_023512174.1 (probable WRKY transcription factor 51 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 2.3e-35
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60
          MASFPYEDPNPNPNPNF QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITG+
Sbjct: 1  MASFPYEDPNPNPNPNFMQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGM 60

Query: 61 DSGGSSVAVDSGSSFVVSSEPSPSMQ 87
          DSGGSSVAVDSGSSFVVSSEPSPS++
Sbjct: 61 DSGGSSVAVDSGSSFVVSSEPSPSIR 86

[Close]

BLAST of CmoCh20G011370 vs. NCBI nr
Match: KAG7011149.1 (putative WRKY transcription factor 51, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MASFPYEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60
          MASFP EDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV
Sbjct: 1  MASFPIEDPNPNPNPNFTQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGV 60

Query: 61 DSGGSSVAVDSGSSFVVSSEP 82
          DSGGSSVAVDSGSSFVVSSEP
Sbjct: 61 DSGGSSVAVDSGSSFVVSSEP 81

The following BLAST results are available for this feature:

BLAST of CmoCh20G011370 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh20G011370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIN3	1.0e-36	97.67	probable WRKY transcription factor 51 OS=Cucurbita moschata OX=3662 GN=LOC111434...	[more]
A0A6J1I2S4	5.1e-36	96.51	probable WRKY transcription factor 51 OS=Cucurbita maxima OX=3661 GN=LOC11147040...	[more]
A0A6J1E1D1	1.4e-17	64.13	probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1DV80	1.4e-17	64.13	probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A0A0LM41	2.6e-16	65.63	WRKY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G297180 PE=4 S...	[more]

BLAST of CmoCh20G011370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571381.1	3.8e-38	100.00	hypothetical protein SDJN03_30296, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022927982.1	2.1e-36	97.67	probable WRKY transcription factor 51 [Cucurbita moschata]	[more]
XP_022971732.1	1.0e-35	96.51	probable WRKY transcription factor 51 [Cucurbita maxima]	[more]
XP_023512174.1	2.3e-35	95.35	probable WRKY transcription factor 51 [Cucurbita pepo subsp. pepo]	[more]
KAG7011149.1	9.8e-34	98.77	putative WRKY transcription factor 51, partial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of CmoCh20G011370 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G011370.1	CmoCh20G011370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding