CmoCh20G011160 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G011160
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCmo_Chr20: 10661322 .. 10664835 (+)
RNA-Seq ExpressionCmoCh20G011160
SyntenyCmoCh20G011160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCACTTCTTCCTCAAGCAAAGAATCAAGTGAGAGCTGGTTGATTGACAATGGGTACACAAATCACATAACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACTGAAGATAAGAGAGTGAGGATTGGCAATGGTGAACACTTGGAAGTCAAGGGAAAAGGCACAGTAGCTATAACAAGTTATGAAGGTACAAAATTTATTCCAGATGTTTTATTTGTACCTAAAATTGATCAAAATCTCTTAAGTGTTGGCCAGTTACTCGATAAAGGCTATAAAGTATTGTTTGAGAATAAGCAGTGCTTGATCAAAGATGCTAGTGGCAAAGACTTGTTCAATGTCAAAATGGAAGGAAAAAGCTTTGCTCTAAATCCGACGGCCTTTATATTGAGAGTTAGTGCCACTGAGATTTGGCACAAAAAACTTACACTCTCATCATCGAGGTTTGCTTAAGATGCAATCAAAGAAGCTGGTAGAAGAACTCACTGACATTGATGAGGACATGCCTCCTTGCCGTACTTGTAATTTTGGGAAGCAACATAGGCAACCCTTTCCTAAACAGACATGGAGAGGCTCGAAAAAGCTGCAATTGGTTAATACTGATCTTTGTGGTCCTCAGCGAACACCATCAACTGGTTCATACTGATCTTTGATGATTTAATAAGAATGTGTTGGATCTTCTTGCTGAAGTAAAAGTGAAAAGTTGCGGGTGTATTTCGGAAATTCAAAGCCAGAGTTGAGAATGAAAGTGCAGGCTTGATTCAGACTATAAGACCAGATTATGGCAAAGAGTACACTTCATAAACTTTTAACAGGTTTTGTGAAGAGGCTGGAATTGAACATCAATTGACAGCTCCATACACTCCTCAACAGAATGATGTCAGTGAAAGGAGGAATAGATTCATAATGAAGATGACGAGATGCATGCTTCATGAGAAGAATCTTCCAAAACGTTTTTGGGGAAAAGCAGCAAACAATGTTGTGTGCTTGCAAAATTGAATTTCAACAAAAATTGTGAAGGACCTGACACCATTTGAAGTTTGGTATGGTTACAAACCTTCTTTAAAGTTCCTTAGAGTATTTGGGTGTCTTTGCTTCACTTACATTCCACAGGTCAAGCGTGATAAGCTTGACAAAAAGGCAGAAGCTTGTTAAATAAAAGCCATGCCTTATTTAGTTACATCTTAATTCACGCGAATGGAGAAGCGTGATTCTAGGAGCCATTGTTTTGGCAATTTGGGCGAAGTCTTCGTCCACTTCTTCTATTTTTGTATATTTGTTTTTTCTATTTTTGTAATTAGATTTGTTATTTAAACCGTTCAACCGAAGTAAAATAAAAACATCGAGTCTTCAGCATTATTAGCGAATCTCTCACTCTCTCTCCTTTTACTTCCGCTAATTTTTCCTTCGAAGAAACCTTCGGCCAATTTTTCGTCGACACTGTCTTCCGAATTGCCAGAGTCAACAAGTGGTATCAGAGCCTCGTTGAAGCGATCGGTAGTATACCATCACAGAAGAGCCAACCTATCAACAATCAAGTTGAATAGCTCAAGTGGTTAGAGTGTCGACCTAACAACACACAAGTCTAAGGTTCGAGTAGAAGAAAATGCAAAGGGCGAAAATAAGCACATCGTGGGGTCCATCCCGAGCAAGCTCGCTCACTCCTCCACGCAGCCGTCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGACGCCGTGATGACGGGCGTCGAGTTGTCGTTGAGCGAGTGATTAGCGAGTGATTAGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACAGTGGAAGAGGTGACCGGAAGACTACGTAACGTCGAGCAGCGGAAGAAGAATATCACTTCAGCTGTTGACACTAAAGCTCCGCGACAACACCAACAATGGATCCTTGACACAGGGGCAACAAACCATATGTCGTCAAGATCGAAGGGCGCGGCACTATCCTGTTCGTCAGTAAGGGAGGCGAGCATTGCAAGCTGACTGACTTCTACTTCATCCCGCAGGCAAGGCGCACCACAAACCGTCTTTACATCCTGGAGTTAGAGATAGACCAACCCGTTAGCCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGACACTTAAACTTTCCTGCCCTAGAAGAGACGTCACCGCCGCCAGCAGGTGCACCACCTGAACCAGTGGAATTCGCAACACCACGGACTGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCTAGGTACCGGATGATGGATGACCTAGTGGGAGGAGGTGAACCACCTGGACTAGCAGCGCGCGAGCTCGAGGAAGTCACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCGGAAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCAGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGTATTTGCGCCAGCAGCAAGGTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTCACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCGGAAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCAGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGTATTTGCGCCAGCAGCAAGGTTAGAATCCGTTCGTTTCTTGCTGGCAATTGCAGCACATCACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGTTGAAGGAGACCGTCTATGTTCGACAACCACCTGGCTTCCTGGATAACGACAACCCTAATAAGGTACTGCGCCTGCACAAAGCACTCTGCGGGCTTCAACAAGCCCCACGAGCCTGGAACGCGAAGCTCGACAGTACCCTACTGTCACTGAATTTCAAACGTTGTGCCTCTGAGCATGACATGTACACGTACGGCCACGGCAAAAAACGACTGATCGTGGGAGTGTACGTCGACAACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCTGA

mRNA sequence

ATGGTCACTTCTTCCTCAAGCAAAGAATCAAGTGAGAGCTGGTTGATTGACAATGGGTACACAAATCACATAACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACTGAAGATAAGAGAGTGAGGATTGGCAATGGTGAACACTTGGAAGTCAAGGGAAAAGGCACAGTAGCTATAACAAGTTATGAAGGTACAAAATTTATTCCAGATGTTTTATTTGTACCTAAAATTGATCAAAATCTCTTAAGTGTTGGCCAGTTACTCGATAAAGGCTATAAAGTATTGTTTGAGAATAAGCAGTGCTTGATCAAAGATGCTAGTGGCAAAGACTTGTTCAATGTCAAAATGGAAGGAAAAAGCTTTGCTCTAAATCCGACGGCCTTTATATTGAGAGTTAGTGCCACTGAGATTTGGCACAAAAAACTTACACTCTCATCATCGAGGGGCAACAAACCATATGTCGTCAAGATCGAAGGGCGCGGCACTATCCTGTTCGTCAGTAAGGGAGGCGAGCATTGCAAGCTGACTGACTTCTACTTCATCCCGCAGGCAAGGCGCACCACAAACCGTCTTTACATCCTGGAGTTAGAGATAGACCAACCCGTTAGCCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGACACTTAAACTTTCCTGCCCTAGAAGAGACGTCACCGCCGCCAGCAGGTGCACCACCTGAACCAGTGGAATTCGCAACACCACGGACTGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCTAGGTACCGGATGATGGATGACCTAGTGGGAGGAGGTGAACCACCTGGACTAGCAGCGCGCGAGCTCGAGGAAGTCACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCGGAAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCAGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCAGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGTATTTGCGCCAGCAGCAAGGTTAGAATCCGTTCGTTTCTTGCTGGCAATTGCAGCACATCACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGTTGAAGGAGACCGTCTATGTTCGACAACCACCTGGCTTCCTGGATAACGACAACCCTAATAAGGTACTGCGCCTGCACAAAGCACTCTGCGGGCTTCAACAAGCCCCACGAGCCTGGAACGCGAAGCTCGACAGTACCCTACTGTCACTGAATTTCAAACGTTGTGCCTCTGAGCATGACATGTACACGTACGGCCACGGCAAAAAACGACTGATCGTGGGAGTGTACGTCGACAACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCTGA

Coding sequence (CDS)

ATGGTCACTTCTTCCTCAAGCAAAGAATCAAGTGAGAGCTGGTTGATTGACAATGGGTACACAAATCACATAACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACTGAAGATAAGAGAGTGAGGATTGGCAATGGTGAACACTTGGAAGTCAAGGGAAAAGGCACAGTAGCTATAACAAGTTATGAAGGTACAAAATTTATTCCAGATGTTTTATTTGTACCTAAAATTGATCAAAATCTCTTAAGTGTTGGCCAGTTACTCGATAAAGGCTATAAAGTATTGTTTGAGAATAAGCAGTGCTTGATCAAAGATGCTAGTGGCAAAGACTTGTTCAATGTCAAAATGGAAGGAAAAAGCTTTGCTCTAAATCCGACGGCCTTTATATTGAGAGTTAGTGCCACTGAGATTTGGCACAAAAAACTTACACTCTCATCATCGAGGGGCAACAAACCATATGTCGTCAAGATCGAAGGGCGCGGCACTATCCTGTTCGTCAGTAAGGGAGGCGAGCATTGCAAGCTGACTGACTTCTACTTCATCCCGCAGGCAAGGCGCACCACAAACCGTCTTTACATCCTGGAGTTAGAGATAGACCAACCCGTTAGCCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGACACTTAAACTTTCCTGCCCTAGAAGAGACGTCACCGCCGCCAGCAGGTGCACCACCTGAACCAGTGGAATTCGCAACACCACGGACTGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCTAGGTACCGGATGATGGATGACCTAGTGGGAGGAGGTGAACCACCTGGACTAGCAGCGCGCGAGCTCGAGGAAGTCACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCGGAAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCAGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGCAATGCAGGAGGAGATGACATCCATCACTGAGAACCAGACGTGGAGTCTGGAGGATATGCCACCAGGACACCGAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCTCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGTATTTGCGCCAGCAGCAAGGTTAGAATCCGTTCGTTTCTTGCTGGCAATTGCAGCACATCACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGTTGAAGGAGACCGTCTATGTTCGACAACCACCTGGCTTCCTGGATAACGACAACCCTAATAAGGTACTGCGCCTGCACAAAGCACTCTGCGGGCTTCAACAAGCCCCACGAGCCTGGAACGCGAAGCTCGACAGTACCCTACTGTCACTGAATTTCAAACGTTGTGCCTCTGAGCATGACATGTACACGTACGGCCACGGCAAAAAACGACTGATCGTGGGAGTGTACGTCGACAACCTCATAATCACTGGAGGCGACGTGGGAGTCCTCTGA

Protein sequence

MVTSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITSYEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGKSFALNPTAFILRVSATEIWHKKLTLSSSRGNKPYVVKIEGRGTILFVSKGGEHCKLTDFYFIPQARRTTNRLYILELEIDQPVSLSAKTEEVSWRWHARYGHLNFPALEETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRMMDDLVGGGEPPGLAARELEEVTFAEAEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKRLIVGVYVDNLIITGGDVGVL
Homology
BLAST of CmoCh20G011160 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.5e-42
Identity = 84/197 (42.64%), Postives = 122/197 (61.93%), Query Frame = 0

Query: 366  FEEAMQEEMTSITENQTWSLEDMPPGH-RAIGLKWVFKLKRNEKGEVVKHKARLVAKGYV 425
            +  AM  E+ +   N TW L   PP H   +G +W+F  K N  G + ++KARLVAKGY 
Sbjct: 968  WRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYN 1027

Query: 426  QKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGF 485
            Q+ G+D+ E F+P  +  S+R +L +A   SW +  +DV +AFL G L + VY+ QPPGF
Sbjct: 1028 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF 1087

Query: 486  LDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKRLIV 545
            +D D PN V +L KAL GL+QAPRAW  +L + LL++ F    S+  ++    GK  + +
Sbjct: 1088 IDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYM 1147

Query: 546  GVYVDNLIITGGDVGVL 562
             VYVD+++ITG D  +L
Sbjct: 1148 LVYVDDILITGNDPTLL 1164

BLAST of CmoCh20G011160 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.4e-40
Identity = 81/197 (41.12%), Postives = 122/197 (61.93%), Query Frame = 0

Query: 366  FEEAMQEEMTSITENQTWSL-EDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYV 425
            + +AM  E+ +   N TW L    PP    +G +W+F  K N  G + ++KARLVAKGY 
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1010

Query: 426  QKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGF 485
            Q+ G+D+ E F+P  +  S+R +L +A   SW +  +DV +AFL G L + VY+ QPPGF
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

Query: 486  LDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKRLIV 545
            +D D P+ V RL KA+ GL+QAPRAW  +L + LL++ F    S+  ++    G+  + +
Sbjct: 1071 VDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYM 1130

Query: 546  GVYVDNLIITGGDVGVL 562
             VYVD+++ITG D  +L
Sbjct: 1131 LVYVDDILITGNDTVLL 1147

BLAST of CmoCh20G011160 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.1e-40
Identity = 82/195 (42.05%), Postives = 133/195 (68.21%), Query Frame = 0

Query: 368  EAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQ 427
            +AMQEEM S+ +N T+ L ++P G R +  KWVFKLK++   ++V++KARLV KG+ QK+
Sbjct: 828  KAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887

Query: 428  GVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFLDN 487
            G+DF+E+F+P  ++ S+R +L++AA    EV  +DVK+AFL+G+L+E +Y+ QP GF   
Sbjct: 888  GIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947

Query: 488  DNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKR-LIVGV 547
               + V +L+K+L GL+QAPR W  K DS + S  + +  S+  +Y     +   +I+ +
Sbjct: 948  GKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLL 1007

Query: 548  YVDNLIITGGDVGVL 562
            YVD+++I G D G++
Sbjct: 1008 YVDDMLIVGKDKGLI 1022

BLAST of CmoCh20G011160 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 153.3 bits (386), Expect = 8.2e-36
Identity = 76/195 (38.97%), Postives = 119/195 (61.03%), Query Frame = 0

Query: 366  FEEAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQ 425
            +EEA+  E+ +   N TW++   P     +  +WVF +K NE G  +++KARLVA+G+ Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 426  KQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFL 485
            K  +D+EE FAP AR+ S RF+L++   ++ +VH MDVK+AFLNG LKE +Y+R P G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI- 1025

Query: 486  DNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHG--KKRLI 545
             + N + V +L+KA+ GL+QA R W    +  L    F   + +  +Y    G   + + 
Sbjct: 1026 -SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIY 1085

Query: 546  VGVYVDNLIITGGDV 559
            V +YVD+++I  GD+
Sbjct: 1086 VLLYVDDVVIATGDM 1098

BLAST of CmoCh20G011160 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-16
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 461 MDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLS 520
           MDV +AFLN  + E +YV+QPPGF++  NP+ V  L+  + GL+QAP  WN  +++TL  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 521 LNFKRCASEHDMYTYGHGKKRLIVGVYVDNLII 554
           + F R   EH +Y        + + VYVD+L++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLV 93

BLAST of CmoCh20G011160 vs. ExPASy TrEMBL
Match: A0A5A7VC09 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold977G00080 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.1e-86
Identity = 224/639 (35.05%), Postives = 329/639 (51.49%), Query Frame = 0

Query: 1   MVTSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAI 60
           +VT     ES+ESWLID+G TNH+T+DKE F++L+ T   +V IGNG+++ VKGKGT+AI
Sbjct: 319 VVTCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVIIGNGDYISVKGKGTIAI 378

Query: 61  TSYEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGK 120
            S +GTK I DVLFVP I+QNLLSVGQL++KG+KV FEN+ CLIKDA+ +D+F VKM+GK
Sbjct: 379 ASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGK 438

Query: 121 SFALNP-----TAFILRVSATEIWHKKLTLSSSRGNKPYVVKIEGRGTILFVSKGGEHCK 180
           SF+LNP     + F L+   T++WHK++     +G    +   E       +S+    CK
Sbjct: 439 SFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQG---LLQLTELALDFPKLSEEISSCK 498

Query: 181 LTDF------YFIPQARRTTNRLYILELEIDQP--------------------------- 240
              F       F   + R T +L ++  ++  P                           
Sbjct: 499 ACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTTSLKGSLYYIAFIDDFTRMCWIFF 558

Query: 241 VSLSAKTEEVSWRWHARYGHLNFPALEETSPPPAGAPPEPVEFATPR-TADSTLDADHDT 300
           +   ++   V W++ AR    N   ++     P       V     R   + T    H+ 
Sbjct: 559 LKFKSEVAHVFWKFKARVE--NESGIKHQLTAPYTPQQNGVSERRNRYIMEMTRCMLHEK 618

Query: 301 DLEARYRMMDDLVGGGEPPGLAARELEEVTFAEAEK-------------------NPCWR 360
            L  ++              L  + L+E T  EA +                    P   
Sbjct: 619 SLPKKFWAEAANTTVFLQNRLPTKALKEKTPFEAWRASPGVFIGYSSISKAYKIFQPQTG 678

Query: 361 KAMQEEMTSITENQTWSLEDM-PPGHRAIGLKWVF-----KLKRNEKGEVVKHKA----R 420
           K +        E++ W+ +D    G     +K+ F     + + + + E+V   +    R
Sbjct: 679 KIIVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVRGTR 738

Query: 421 LVAKGYVQ--------------KQGVDFEEAMQEEMTSITENQTWSLEDMPPGHRAIGLK 480
           L++  Y +              K+   +  AM+EE++ I +N+TW L D P   + IG+K
Sbjct: 739 LLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVIGVK 798

Query: 481 WVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEV 540
           WVF+ K N  G + KHKARLV KGY Q  GVD+ + FAP AR++++R L AIAA   W++
Sbjct: 799 WVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDNFAPVARMDTIRLLFAIAAQKGWKL 858

Query: 541 HHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTL 558
           + +DVKSAFLNG L+E +YV QP G       NKV  L KAL GL+QAPRAW +K+D  L
Sbjct: 859 YQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKIDEHL 918

BLAST of CmoCh20G011160 vs. ExPASy TrEMBL
Match: A0A438JJ21 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=29760 GN=RE2_462 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.6e-85
Identity = 220/607 (36.24%), Postives = 316/607 (52.06%), Query Frame = 0

Query: 3   TSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITS 62
           T  ++  +SESWL+D+G TNH+TYD++ F E+  T   +VRIGNGE++ VKGKGTVAI S
Sbjct: 309 TCFANGSTSESWLVDSGCTNHMTYDQDLFREIDRTAISKVRIGNGEYIPVKGKGTVAIES 368

Query: 63  YEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGKSF 122
             G K I DVLFVP IDQNLLSVGQ ++KG+KV FE+K C+IKDA G+++FN+KM+GKSF
Sbjct: 369 LTGLKLISDVLFVPDIDQNLLSVGQFVEKGFKVCFEDKNCIIKDAEGREVFNIKMKGKSF 428

Query: 123 ALN-----PTAFILRVSATEIWHKKLTLSSSRGNKPYVVK----IEGRGTI---LFVSKG 182
           ALN       A     + T +WHK+  L     N    +K    +EG   +   L +   
Sbjct: 429 ALNMLEDEQIAAAQHENNTMLWHKR--LGHFHHNVVLYMKKNQIVEGLPDLEEELPICVA 488

Query: 183 GEHCKLTDFYFIPQ--ARRTTNRLYILELEIDQP------------VSLSAKTEEVSWRW 242
            ++ K T   F PQ  A ++T +L ++  ++  P            ++         W +
Sbjct: 489 CQYGKQTRLPF-PQKAAWKSTQKLQLVHTDVSGPQKTPSLKGSKYYIAFVDDFTRFCWIY 548

Query: 243 HARYG------HLNFPALEETSPP---PAGAPPEPVEFATPRTADSTLDADHDTDLEARY 302
              Y        L + A+ E                E+ + +      DA  D  L A Y
Sbjct: 549 FLTYKSEVADVFLRYKAMVENQREYRIKVIRSDNGTEYTSEKFNKFCEDAGIDHQLTAPY 608

Query: 303 R------MMDDLVGGGEPPGLAARELEEVTFAEAEKNPCWRKAMQEEMTSITENQTWSLE 362
                  +  D +     PG+        + A     P   K +        E + WS +
Sbjct: 609 TPQQNGVVKRDKLDKKSEPGIFI-GYSNTSKAYRIYLPQNNKIVVSRDVKFLETEKWSWD 668

Query: 363 DMPPGH--------RAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQ-KQGVDFEEAMQE 422
           +    +           G + +F + +        + A L   G+V+  +   +   MQE
Sbjct: 669 EQNQQYIDEDVDELPIRGFRTLFDIYQR------CNIAVLEPAGFVEAAENKRWRVVMQE 728

Query: 423 EMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFE 482
           E+  I +N TW L D P   + IG+KWV++ K N  G + KHKARLV KGY Q  GVDF 
Sbjct: 729 ELNMIDKNNTWELVDRPSHKKPIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFS 788

Query: 483 EVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNK 542
           E FAP ARL+++R LLA+AA   W+++ +DVKSAFLNG L+E ++V QP GF       K
Sbjct: 789 ETFAPVARLDTIRMLLALAAQRKWKIYQLDVKSAFLNGYLEEEIFVEQPEGFSIKGKEEK 848

Query: 543 VLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKRLIVGVYVDNLI 560
           V  L KAL GL+QAPRAW +++D+ LL+L F +  SE  +Y     +  LIV +YVD+L+
Sbjct: 849 VYLLKKALYGLRQAPRAWCSRIDTHLLTLGFHKSLSEFTLYIKKIEEDILIVSLYVDDLL 905

BLAST of CmoCh20G011160 vs. ExPASy TrEMBL
Match: A0A438EE23 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2689 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.6e-85
Identity = 222/642 (34.58%), Postives = 320/642 (49.84%), Query Frame = 0

Query: 3   TSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITS 62
           T  ++  +SESWL+D+G TNH+TYD+  F E+  T   +V IGNGE++ VKGKGTVAI S
Sbjct: 176 TCFTNGSTSESWLVDSGCTNHMTYDQNLFREIDRTAISKVGIGNGEYIPVKGKGTVAIES 235

Query: 63  YEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGKSF 122
             G K I DVLFVP IDQNLLSVGQL++KG+KV FE+K C+IKDA G+++FN+KM+GKSF
Sbjct: 236 LTGLKLISDVLFVPDIDQNLLSVGQLVEKGFKVCFEDKNCIIKDAEGREVFNIKMKGKSF 295

Query: 123 ALN-----PTAFILRVSATEIWHKKLTLSSSRGNKPYVVK-IEGRGTILFVSKGGEHCKL 182
           ALN       A     + T +WHK+L       +K  ++K +EGR       KG      
Sbjct: 296 ALNMLEDEQIAAAQHENNTMLWHKRLGHFHHFEDKNCIIKDVEGREVFNIKMKG------ 355

Query: 183 TDFYFIPQARRTTNRLYILELEIDQPVSLSAKTEEVSWRWHARYGHLN------------ 242
                         + + L +  D+ ++ +A+ E  +  WH R GH +            
Sbjct: 356 --------------KSFALNMLEDEQIA-AAQHENNTMLWHKRLGHFHHNAVLYMKKNQI 415

Query: 243 ---FPALEETSPPPAGAP-------PEP---------------VEFATPRTADSTLDADH 302
               P LEE  P  A          P P                + + P+   S   + +
Sbjct: 416 VEGLPGLEEELPICAACQYGKQTRLPFPQKAAWKSTQKLQLVHTDVSGPQKTPSLKGSKY 475

Query: 303 ----------------------------------DTDLEARYRMMDDLVGGGEPPGL--- 362
                                             +   E R ++  D +     PG+   
Sbjct: 476 YIAFIDDFTRFCWIYFLTYKSEVADVFLRYKSMVENQSEYRIKVKRDKLDKKSEPGIFIG 535

Query: 363 --AARELEEVTFAEAEKNPCWR--KAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKL 422
             +  +   +   +  K    R  K ++ E  S  E     +++        G + +F +
Sbjct: 536 YSSTSKAYRIYLPQNNKIVVRRDVKFLETEKWSWDEQNQQYIDEDVDELPIRGFRTLFDI 595

Query: 423 KRNEKGEVVKHKARLVAKGYVQ-KQGVDFEEAMQEEMTSITENQTWSLEDMPPGHRAIGL 482
            +        + A L   G+V+  +   +  AMQEE+  I +N TW L D P   + IG+
Sbjct: 596 YQR------CNIAVLEPAGFVEAAENKRWRVAMQEELNMIDKNNTWELVDRPSHKKPIGV 655

Query: 483 KWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWE 542
           KWV++ K N  G + KHKARLV KGY Q  GVDF E FAP ARL+++R LLA+AA   W+
Sbjct: 656 KWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFSETFAPVARLDTIRMLLALAAQRKWK 715

Query: 543 VHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDST 560
           ++ +D+KSAFLNG L+E ++V QP GF       KV  L KAL GL+QAPRAW  ++D+ 
Sbjct: 716 IYQLDMKSAFLNGYLEEEIFVEQPEGFAIKGKEEKVYLLKKALYGLRQAPRAWYNRIDTH 775

BLAST of CmoCh20G011160 vs. ExPASy TrEMBL
Match: A0A438CDR2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_927 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.8e-84
Identity = 215/572 (37.59%), Postives = 307/572 (53.67%), Query Frame = 0

Query: 5   SSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITSYE 64
           ++S  SS+SWLID+G TNH+T D+E F+EL  T   +V+IGNGE + VKGKGTVAI S  
Sbjct: 314 TTSNSSSDSWLIDSGCTNHMTNDQELFKELDKTIISKVKIGNGEFISVKGKGTVAIESLT 373

Query: 65  GTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGKSFAL 124
           G K+I DVL+VP IDQNLLSVGQL++KG+KV+FE+K C+IKDA G+D+F VKM  KSFAL
Sbjct: 374 GLKYITDVLYVPDIDQNLLSVGQLIEKGFKVIFEDKWCMIKDAKGRDVFKVKMRAKSFAL 433

Query: 125 N-----PTAFILRVSATEIWHKKLTLSSSRG----NKPYVVKIEGRGTILFVSK-----G 184
           N       AF   VS  E+WH++L      G     K  +VK    G  L   K      
Sbjct: 434 NLMEDEQIAFSSTVSNAELWHRRLGHFHHVGLLYMQKQNLVK----GVPLLEDKLADCVA 493

Query: 185 GEHCKLTDFYFIPQARRTTNRLYILELEIDQPVSL-SAKTEEVSWRWHARYGHLNFPALE 244
            ++ K T   F   A R  ++L ++  ++  P    S    +    +   Y    +    
Sbjct: 494 CQYGKQTRRPFPQTAWRAMHKLQLVHTDVGGPQKTPSLNGSKYYIAFIDDYTRFCWIYFL 553

Query: 245 ETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRMMDDLVGGGEPPGLAARELEE 304
           ++    A    +   +   +++        D   E    + D      E  G+  +    
Sbjct: 554 KSKSEVANVFWKYKAWVENQSSCRMQKIRSDNGKEYTNEIFDKFC---EEAGIEHQLTTP 613

Query: 305 VTFAE--AEKNPCWRKAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVV 364
            T  +   +++   +KA QE++    E++ W+ E+              K++  +  +  
Sbjct: 614 YTPQQNGVKRDKLDKKAEQEDV-KFMEDRQWNWEES------------IKMQLPKVPQYF 673

Query: 365 KHKARLVAKGYVQKQGVD--FEEAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKR 424
                 V     ++   D  + EAM+EE+  I +N TW L D P   + IG+KWV++ K 
Sbjct: 674 DEDIDDVPVREFEEAEKDDKWIEAMKEELRMIEKNDTWELVDRPQHRKVIGVKWVYRTKL 733

Query: 425 NEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKS 484
           N  G V K+KARLV KGY Q  GVDF E FAP ARL+++R LLA+ A   W+ + +DVKS
Sbjct: 734 NADGSVNKYKARLVVKGYSQVFGVDFSETFAPVARLDTIRMLLALTAQKGWKTYQLDVKS 793

Query: 485 AFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKR 544
           AFLNG L+E +YV QP GF       KV  L KAL GL+QAPRAW +++D  L SL F +
Sbjct: 794 AFLNGYLQEEIYVEQPEGFQVKGQEEKVYLLKKALYGLKQAPRAWYSRIDEHLQSLGFVK 853

Query: 545 CASEHDMYTYGHGKKRLIVGVYVDNLIITGGD 558
             SE  +Y  G     ++V VYVD+L++TG +
Sbjct: 854 SPSEATLYVKGTDANLIVVSVYVDDLLVTGSN 865

BLAST of CmoCh20G011160 vs. ExPASy TrEMBL
Match: A0A438DQ73 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3494 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.9e-84
Identity = 218/613 (35.56%), Postives = 317/613 (51.71%), Query Frame = 0

Query: 5   SSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITSYE 64
           ++S  SS+SWLID+G TNH+T D+E F+EL  T   +V+IGNGE + VKGKGTVAI S  
Sbjct: 191 TTSNSSSDSWLIDSGCTNHMTNDQELFKELDKTIISKVKIGNGEFISVKGKGTVAIESLT 250

Query: 65  GTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGKSFAL 124
           G K+I DVL+VP IDQNLLSVGQL++KG+KV+FE+K C+IKDA G+D+F VKM  K FAL
Sbjct: 251 GLKYITDVLYVPDIDQNLLSVGQLIEKGFKVIFEDKWCMIKDAKGRDVFKVKMRAKGFAL 310

Query: 125 N-----PTAFILRVSATEIWHKKLTLSSSRG----NKPYVVKIEGRGTILFVSK-----G 184
           N       AF   VS  E+WH++L      G     K  +VK    G  L   K      
Sbjct: 311 NLMEDEQIAFSSTVSNAELWHRRLGHFHHVGLLYMQKQNLVK----GVPLLEDKLADCVA 370

Query: 185 GEHCKLTDFYFIPQARRTTNRLYILELEIDQPVS-------------------------L 244
            ++ K T   F   A R  ++L ++  ++  P                           L
Sbjct: 371 CQYGKQTRRPFPQTAWRAMHKLQLVHTDVGGPQKTPSLNGSKYYIAFIDDYTRFCWIYFL 430

Query: 245 SAKTE--EVSWRWHARYGHLNFPALEETSPPPAGAPPEPV------------EFATPRTA 304
            +K+E   V W++ A   + +   +++            +            +  TP T 
Sbjct: 431 KSKSEVANVFWKYKAWVENQSSCRMQKIRSDNGKEYTNEIFDKFCEEAGIEHQLTTPYTP 490

Query: 305 DST------LDADHDTDLEARYRMMDDLVGGGEPPGLAARELEEVTFAEAEKNPCWRKAM 364
                    LD   +  +   Y          +P         +V F E ++   W +++
Sbjct: 491 QQNGVKRDKLDKKAEPGVFIGYSNSSKAYRIFQPQNGKILVSRDVKFME-DRQWNWEESI 550

Query: 365 QEEMTSITENQTWSLEDMP-PGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGV 424
           + ++  + +     ++D+P  G R++   +       E+  V   +    A+    ++  
Sbjct: 551 KMQLPKVPQYFDEDIDDVPVRGIRSLSDVY-------ERNNVAVFEP---AEFEEAEKDD 610

Query: 425 DFEEAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYV 484
            + EAM+EE+  I +N TW L D P   + IG+KWV++ K N  G V K+KARLV KGY 
Sbjct: 611 KWIEAMKEELRMIEKNDTWELVDRPQHRKVIGVKWVYRTKLNADGSVNKYKARLVVKGYS 670

Query: 485 QKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGF 544
           Q  GVDF E FAP ARL+++R LLA+ A   W+ + +DVKSAFLNG L++ +YV QP GF
Sbjct: 671 QVFGVDFSETFAPVARLDTIRMLLALTAQKGWKTYQLDVKSAFLNGYLQKEIYVEQPEGF 730

Query: 545 LDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKRLIV 558
                  KV  L KAL GL+QAPRAW +++D  L SL F +  SE  +Y  G     ++V
Sbjct: 731 QVKGQEEKVYLLKKALYGLKQAPRAWYSRIDEHLQSLGFVKSPSEATLYVKGTDANLIVV 788

BLAST of CmoCh20G011160 vs. NCBI nr
Match: XP_023521510.1 (uncharacterized protein LOC111785335 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.8 bits (852), Expect = 5.7e-87
Identity = 201/384 (52.34%), Postives = 237/384 (61.72%), Query Frame = 0

Query: 230 ETSPPPAGAPPEPVEFATPRTADSTLDADHDTDLEARYRMMDDLVGGGEPPGLAARELEE 289
           E SP  A   P+PVEFATPRTADSTLD DHD DL ARYR MDDLVGGGEPPGLA RELEE
Sbjct: 135 ELSPTSAAVTPKPVEFATPRTADSTLDVDHDDDLVARYRRMDDLVGGGEPPGLATRELEE 194

Query: 290 V------------TFAEAEKNPCWRKAMQEEMTSITEN----QTWSLEDMP-------PG 349
           V            TFA+AE+NPC  K    ++ S   N    +T  ++  P       PG
Sbjct: 195 VTELHAISTDEPNTFAKAERNPCCLKVHHMDVKSAFLNGELKETIDVQQPPGFLDNDNPG 254

Query: 350 HRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEAMQEEMTSITEN------ 409
                    + +    +G   +H+        V  + V+F      + T   ++      
Sbjct: 255 KNPNQFTVEYLITEPREGG-AQHRELSPTSAAVTPKPVEFATPRTADSTLDVDHDDDLVA 314

Query: 410 QTWSLEDM-----PPGHRAIGLKWVFKL------------------KRNEKGEVVKHKAR 469
           +   ++D+     PPG     L+ V +L                   R EKGEVVKHKA 
Sbjct: 315 RYRRMDDLVGGGEPPGLATRELEEVTELHAIAQMNRTPSPKQKGTHARIEKGEVVKHKAH 374

Query: 470 LVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVY 529
           LVAKGY+ KQGVDFEEVFA   RLE VR LL IA H SWEVHHMDVKS FLNGELKET+ 
Sbjct: 375 LVAKGYIPKQGVDFEEVFALVTRLEFVRLLLVIATHCSWEVHHMDVKSFFLNGELKETID 434

Query: 530 VRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGH 562
           V+QPPGFLDNDNP+KVLRLHKAL GL+QAPRAWNAKLDS LLS+ FK CASEH MYT+ H
Sbjct: 435 VQQPPGFLDNDNPSKVLRLHKALYGLRQAPRAWNAKLDSILLSVKFKCCASEHGMYTHDH 494

BLAST of CmoCh20G011160 vs. NCBI nr
Match: KAA0063435.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 330.9 bits (847), Expect = 2.2e-86
Identity = 224/639 (35.05%), Postives = 329/639 (51.49%), Query Frame = 0

Query: 1   MVTSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAI 60
           +VT     ES+ESWLID+G TNH+T+DKE F++L+ T   +V IGNG+++ VKGKGT+AI
Sbjct: 319 VVTCFVGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVIIGNGDYISVKGKGTIAI 378

Query: 61  TSYEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGK 120
            S +GTK I DVLFVP I+QNLLSVGQL++KG+KV FEN+ CLIKDA+ +D+F VKM+GK
Sbjct: 379 ASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGK 438

Query: 121 SFALNP-----TAFILRVSATEIWHKKLTLSSSRGNKPYVVKIEGRGTILFVSKGGEHCK 180
           SF+LNP     + F L+   T++WHK++     +G    +   E       +S+    CK
Sbjct: 439 SFSLNPLEEEQSVFALKEDETQLWHKRVGHYHHQG---LLQLTELALDFPKLSEEISSCK 498

Query: 181 LTDF------YFIPQARRTTNRLYILELEIDQP--------------------------- 240
              F       F   + R T +L ++  ++  P                           
Sbjct: 499 ACHFGKQNRKSFPKSSWRATQKLQLIHTDVAGPQRTTSLKGSLYYIAFIDDFTRMCWIFF 558

Query: 241 VSLSAKTEEVSWRWHARYGHLNFPALEETSPPPAGAPPEPVEFATPR-TADSTLDADHDT 300
           +   ++   V W++ AR    N   ++     P       V     R   + T    H+ 
Sbjct: 559 LKFKSEVAHVFWKFKARVE--NESGIKHQLTAPYTPQQNGVSERRNRYIMEMTRCMLHEK 618

Query: 301 DLEARYRMMDDLVGGGEPPGLAARELEEVTFAEAEK-------------------NPCWR 360
            L  ++              L  + L+E T  EA +                    P   
Sbjct: 619 SLPKKFWAEAANTTVFLQNRLPTKALKEKTPFEAWRASPGVFIGYSSISKAYKIFQPQTG 678

Query: 361 KAMQEEMTSITENQTWSLEDM-PPGHRAIGLKWVF-----KLKRNEKGEVVKHKA----R 420
           K +        E++ W+ +D    G     +K+ F     + + + + E+V   +    R
Sbjct: 679 KIIVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVRGTR 738

Query: 421 LVAKGYVQ--------------KQGVDFEEAMQEEMTSITENQTWSLEDMPPGHRAIGLK 480
           L++  Y +              K+   +  AM+EE++ I +N+TW L D P   + IG+K
Sbjct: 739 LLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVIGVK 798

Query: 481 WVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEV 540
           WVF+ K N  G + KHKARLV KGY Q  GVD+ + FAP AR++++R L AIAA   W++
Sbjct: 799 WVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDNFAPVARMDTIRLLFAIAAQKGWKL 858

Query: 541 HHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTL 558
           + +DVKSAFLNG L+E +YV QP G       NKV  L KAL GL+QAPRAW +K+D  L
Sbjct: 859 YQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKIDEHL 918

BLAST of CmoCh20G011160 vs. NCBI nr
Match: RVW46097.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 326.2 bits (835), Expect = 5.4e-85
Identity = 222/642 (34.58%), Postives = 320/642 (49.84%), Query Frame = 0

Query: 3   TSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITS 62
           T  ++  +SESWL+D+G TNH+TYD+  F E+  T   +V IGNGE++ VKGKGTVAI S
Sbjct: 176 TCFTNGSTSESWLVDSGCTNHMTYDQNLFREIDRTAISKVGIGNGEYIPVKGKGTVAIES 235

Query: 63  YEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGKSF 122
             G K I DVLFVP IDQNLLSVGQL++KG+KV FE+K C+IKDA G+++FN+KM+GKSF
Sbjct: 236 LTGLKLISDVLFVPDIDQNLLSVGQLVEKGFKVCFEDKNCIIKDAEGREVFNIKMKGKSF 295

Query: 123 ALN-----PTAFILRVSATEIWHKKLTLSSSRGNKPYVVK-IEGRGTILFVSKGGEHCKL 182
           ALN       A     + T +WHK+L       +K  ++K +EGR       KG      
Sbjct: 296 ALNMLEDEQIAAAQHENNTMLWHKRLGHFHHFEDKNCIIKDVEGREVFNIKMKG------ 355

Query: 183 TDFYFIPQARRTTNRLYILELEIDQPVSLSAKTEEVSWRWHARYGHLN------------ 242
                         + + L +  D+ ++ +A+ E  +  WH R GH +            
Sbjct: 356 --------------KSFALNMLEDEQIA-AAQHENNTMLWHKRLGHFHHNAVLYMKKNQI 415

Query: 243 ---FPALEETSPPPAGAP-------PEP---------------VEFATPRTADSTLDADH 302
               P LEE  P  A          P P                + + P+   S   + +
Sbjct: 416 VEGLPGLEEELPICAACQYGKQTRLPFPQKAAWKSTQKLQLVHTDVSGPQKTPSLKGSKY 475

Query: 303 ----------------------------------DTDLEARYRMMDDLVGGGEPPGL--- 362
                                             +   E R ++  D +     PG+   
Sbjct: 476 YIAFIDDFTRFCWIYFLTYKSEVADVFLRYKSMVENQSEYRIKVKRDKLDKKSEPGIFIG 535

Query: 363 --AARELEEVTFAEAEKNPCWR--KAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKL 422
             +  +   +   +  K    R  K ++ E  S  E     +++        G + +F +
Sbjct: 536 YSSTSKAYRIYLPQNNKIVVRRDVKFLETEKWSWDEQNQQYIDEDVDELPIRGFRTLFDI 595

Query: 423 KRNEKGEVVKHKARLVAKGYVQ-KQGVDFEEAMQEEMTSITENQTWSLEDMPPGHRAIGL 482
            +        + A L   G+V+  +   +  AMQEE+  I +N TW L D P   + IG+
Sbjct: 596 YQR------CNIAVLEPAGFVEAAENKRWRVAMQEELNMIDKNNTWELVDRPSHKKPIGV 655

Query: 483 KWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWE 542
           KWV++ K N  G + KHKARLV KGY Q  GVDF E FAP ARL+++R LLA+AA   W+
Sbjct: 656 KWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFSETFAPVARLDTIRMLLALAAQRKWK 715

Query: 543 VHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNKVLRLHKALCGLQQAPRAWNAKLDST 560
           ++ +D+KSAFLNG L+E ++V QP GF       KV  L KAL GL+QAPRAW  ++D+ 
Sbjct: 716 IYQLDMKSAFLNGYLEEEIFVEQPEGFAIKGKEEKVYLLKKALYGLRQAPRAWYNRIDTH 775

BLAST of CmoCh20G011160 vs. NCBI nr
Match: RVX08961.1 (Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera])

HSP 1 Score: 326.2 bits (835), Expect = 5.4e-85
Identity = 220/607 (36.24%), Postives = 316/607 (52.06%), Query Frame = 0

Query: 3   TSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAITS 62
           T  ++  +SESWL+D+G TNH+TYD++ F E+  T   +VRIGNGE++ VKGKGTVAI S
Sbjct: 309 TCFANGSTSESWLVDSGCTNHMTYDQDLFREIDRTAISKVRIGNGEYIPVKGKGTVAIES 368

Query: 63  YEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGKSF 122
             G K I DVLFVP IDQNLLSVGQ ++KG+KV FE+K C+IKDA G+++FN+KM+GKSF
Sbjct: 369 LTGLKLISDVLFVPDIDQNLLSVGQFVEKGFKVCFEDKNCIIKDAEGREVFNIKMKGKSF 428

Query: 123 ALN-----PTAFILRVSATEIWHKKLTLSSSRGNKPYVVK----IEGRGTI---LFVSKG 182
           ALN       A     + T +WHK+  L     N    +K    +EG   +   L +   
Sbjct: 429 ALNMLEDEQIAAAQHENNTMLWHKR--LGHFHHNVVLYMKKNQIVEGLPDLEEELPICVA 488

Query: 183 GEHCKLTDFYFIPQ--ARRTTNRLYILELEIDQP------------VSLSAKTEEVSWRW 242
            ++ K T   F PQ  A ++T +L ++  ++  P            ++         W +
Sbjct: 489 CQYGKQTRLPF-PQKAAWKSTQKLQLVHTDVSGPQKTPSLKGSKYYIAFVDDFTRFCWIY 548

Query: 243 HARYG------HLNFPALEETSPP---PAGAPPEPVEFATPRTADSTLDADHDTDLEARY 302
              Y        L + A+ E                E+ + +      DA  D  L A Y
Sbjct: 549 FLTYKSEVADVFLRYKAMVENQREYRIKVIRSDNGTEYTSEKFNKFCEDAGIDHQLTAPY 608

Query: 303 R------MMDDLVGGGEPPGLAARELEEVTFAEAEKNPCWRKAMQEEMTSITENQTWSLE 362
                  +  D +     PG+        + A     P   K +        E + WS +
Sbjct: 609 TPQQNGVVKRDKLDKKSEPGIFI-GYSNTSKAYRIYLPQNNKIVVSRDVKFLETEKWSWD 668

Query: 363 DMPPGH--------RAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQ-KQGVDFEEAMQE 422
           +    +           G + +F + +        + A L   G+V+  +   +   MQE
Sbjct: 669 EQNQQYIDEDVDELPIRGFRTLFDIYQR------CNIAVLEPAGFVEAAENKRWRVVMQE 728

Query: 423 EMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGVDFE 482
           E+  I +N TW L D P   + IG+KWV++ K N  G + KHKARLV KGY Q  GVDF 
Sbjct: 729 ELNMIDKNNTWELVDRPSHKKPIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFS 788

Query: 483 EVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPNK 542
           E FAP ARL+++R LLA+AA   W+++ +DVKSAFLNG L+E ++V QP GF       K
Sbjct: 789 ETFAPVARLDTIRMLLALAAQRKWKIYQLDVKSAFLNGYLEEEIFVEQPEGFSIKGKEEK 848

Query: 543 VLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKRLIVGVYVDNLI 560
           V  L KAL GL+QAPRAW +++D+ LL+L F +  SE  +Y     +  LIV +YVD+L+
Sbjct: 849 VYLLKKALYGLRQAPRAWCSRIDTHLLTLGFHKSLSEFTLYIKKIEEDILIVSLYVDDLL 905

BLAST of CmoCh20G011160 vs. NCBI nr
Match: XP_003613757.4 (uncharacterized protein LOC11413243 [Medicago truncatula])

HSP 1 Score: 323.2 bits (827), Expect = 4.5e-84
Identity = 238/696 (34.20%), Postives = 339/696 (48.71%), Query Frame = 0

Query: 1    MVTSSSSKESSESWLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLEVKGKGTVAI 60
            + T  S  +SS+SWLID+G TNH+TYDKE F+ELR ++  +VRIGNG+++ VKGKGT+AI
Sbjct: 320  VATCFSGSDSSDSWLIDSGCTNHMTYDKEIFKELRSSKTSKVRIGNGQNISVKGKGTIAI 379

Query: 61   TSYEGTKFIPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQCLIKDASGKDLFNVKMEGK 120
             S  GTK I DVL+VP+IDQNLLSVGQLL+KG+KV FE+K CLIKDASG+++F VKM GK
Sbjct: 380  VSCSGTKLISDVLYVPEIDQNLLSVGQLLEKGFKVHFEDKHCLIKDASGQEMFKVKMRGK 439

Query: 121  SFALNP-----TAFILRVSATEIWHKKLTLSSSRG-----NKPYVVKIEGRGTILFVSKG 180
            SF LNP     +AF ++ S TE+WHK+L     +G     +K  V  +      L   + 
Sbjct: 440  SFTLNPLEEKQSAFTVKESVTEMWHKRLGHYHHQGLLLLQSKKLVRDLPMLEDTLPHCQA 499

Query: 181  GEHCKLTDFYFIPQARRTTNRLYILELEIDQPVSLSAKTEEV------------SWRWHA 240
             ++ K     F   A R T +L ++  ++  P   S+    +             W +  
Sbjct: 500  CQYGKQHRQSFPKSAWRATQKLQLIHTDLCGPHRTSSLNSSLYYIVFIDDFTRFCWIFFL 559

Query: 241  RYG------HLNFPALEE------------------------------------TSP--P 300
            ++        L F  L E                                    T+P  P
Sbjct: 560  KFKSEVAGVFLKFKKLVENESGCNIQVLRSDNGKEYTSGEFNSFCEEAGIKHQLTAPYTP 619

Query: 301  PAGAPPE-------------------PVEFATPRTADS--------TLDADHDTDLEARY 360
                  E                   P +F       S        T    + T  EA Y
Sbjct: 620  QQNGVSERRNRYIMEMTRCMLHEKNLPKKFWAEAANTSVFLQNRLPTTAVKNQTPFEAWY 679

Query: 361  RMMDDL-------------VGGGEPPGLAARELEEVTFAEAEKNPCWRKAMQEEMTSI-- 420
                 L             V   +   L  + ++ +    +  +  + K  Q E  +I  
Sbjct: 680  GYKPSLNFLKVFGCLCFTYVPQVKRDKLDKKAVQGIFIGYSTISKAY-KVFQPETGNIVI 739

Query: 421  ------TENQTWSLEDMPPGHRAIG-LKWVFKLKRNE--KGEVVK----HKARLVAKGYV 480
                   EN+ W  + +   ++A   +K V +    E  K E+V        RL++  Y 
Sbjct: 740  SRDVHFVENEEWVWDTLKVSNQASNQIKNVERQTSEEDWKNEMVDDIPIRGTRLLSDVYE 799

Query: 481  Q-----KQGVDFEE---------AMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKR 540
            +      +  DF E         AM+EE+  I +N TW L D P   + IG+KWVF+ K 
Sbjct: 800  RCNIAVCEPADFNEAKLDRKWMVAMKEELHMIEKNNTWQLVDRPQDRKIIGVKWVFRTKL 859

Query: 541  NEKGEVVKHKARLVAKGYVQKQGVDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKS 562
            N  G + KHKARLV KGY Q  GVD+ + FAP ARL+++R LLA+A    W+V+ +DVKS
Sbjct: 860  NADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARLDTIRLLLAVAIQMGWKVYQLDVKS 919

BLAST of CmoCh20G011160 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-39
Identity = 78/189 (41.27%), Postives = 120/189 (63.49%), Query Frame = 0

Query: 369 AMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQG 428
           AM +E+ ++    TW +  +PP  + IG KWV+K+K N  G + ++KARLVAKGY Q++G
Sbjct: 101 AMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEG 160

Query: 429 VDFEEVFAPAARLESVRFLLAIAAHHSWEVHHMDVKSAFLNGELKETVYVRQPPGFL--- 488
           +DF E F+P  +L SV+ +LAI+A +++ +H +D+ +AFLNG+L E +Y++ PPG+    
Sbjct: 161 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 220

Query: 489 -DNDNPNKVLRLHKALCGLQQAPRAWNAKLDSTLLSLNFKRCASEHDMYTYGHGKKRLIV 548
            D+  PN V  L K++ GL+QA R W  K   TL+   F +  S+H  +        L V
Sbjct: 221 GDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCV 280

Query: 549 GVYVDNLII 554
            VYVD++II
Sbjct: 281 LVYVDDIII 289

BLAST of CmoCh20G011160 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 76.6 bits (187), Expect = 6.9e-14
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 368 EAMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQ 427
           +AMQEE+ +++ N+TW L   P     +G KWVFK K +  G + + KARLVAKG+ Q++
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 428 GVDFEEVFAPAARLESVRFLLAIA 452
           G+ F E ++P  R  ++R +L +A
Sbjct: 102 GIYFVETYSPVVRTATIRTILNVA 125

BLAST of CmoCh20G011160 vs. TAIR 10
Match: AT3G20980.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-08
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 0

Query: 14  WLIDNGYTNHITYDKESFEELRDTEDKRVRIGNGEHLE-----VKGKGTVAITSYEGTKF 73
           WLI +  +NH+T   + F  L  +   +V+  +G+  E     V+G G V   + EG K 
Sbjct: 269 WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEGNKT 328

Query: 74  IPDVLFVPKIDQNLLSVGQLLDKGYKVLFENKQ-CLIKDASGKDLFNVKM-EGKSFAL 125
           I +VL+VP I+ N LSV QL   G++V  E +  C + D +   +F   M E + F L
Sbjct: 329 IKNVLYVPGIEGNALSVSQLKRNGFEVSMERRTGCFVWDRTTGKMFGKNMWEKRGFCL 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94HW21.5e-4242.64Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.4e-4041.12Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109787.1e-4042.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041468.2e-3638.97Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P256009.4e-1640.86Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A5A7VC091.1e-8635.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A438JJ212.6e-8536.24Retrovirus-related Pol polyprotein from transposon RE2 OS=Vitis vinifera OX=2976... [more]
A0A438EE232.6e-8534.58Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438CDR23.8e-8437.59Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438DQ734.9e-8435.56Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
XP_023521510.15.7e-8752.34uncharacterized protein LOC111785335 [Cucurbita pepo subsp. pepo][more]
KAA0063435.12.2e-8635.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
RVW46097.15.4e-8534.58Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVX08961.15.4e-8536.24Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera][more]
XP_003613757.44.5e-8434.20uncharacterized protein LOC11413243 [Medicago truncatula][more]
Match NameE-valueIdentityDescription
AT4G23160.12.8e-3941.27cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.16.9e-1441.67Reverse transcriptase (RNA-dependent DNA polymerase) [more]
AT3G20980.13.3e-0833.90Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 191..233
e-value: 6.9E-7
score: 29.0
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 380..560
e-value: 2.1E-71
score: 240.3
coord: 315..369
e-value: 1.7E-14
score: 54.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..256
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 364..555
coord: 287..368
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 380..557

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G011160.1CmoCh20G011160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding