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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GAAACATGAATTCAAGGTCCATTTCAACCATGATGGTTCTTCTTGTTTTCCTTGTTCTCAGTGGTAATACTTTCTTTGATCATATATTTTTTTTTAACATTACTTATAAGAGTGTTTATTGAGCATAAAGATGTTGGATTTTGAATGTAGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGTTATGCCGAGGTCAGCTTGGACCCGATGCTGATGGACTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGATCTTGTACCTTCCAAATCTCTCCTTTTGAGAATTTGATGCTTAAGACCGTTAGTTATGTATCGACATGTTATGGAATTTCATTCGAATAAACGAG mRNA sequence GAAACATGAATTCAAGGTCCATTTCAACCATGATGGTTCTTCTTGTTTTCCTTGTTCTCAGTGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGTTATGCCGAGGTCAGCTTGGACCCGATGCTGATGGACTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGATCTTGTACCTTCCAAATCTCTCCTTTTGAGAATTTGATGCTTAAGACCGTTAGTTATGTATCGACATGTTATGGAATTTCATTCGAATAAACGAG Coding sequence (CDS) ATGAATTCAAGGTCCATTTCAACCATGATGGTTCTTCTTGTTTTCCTTGTTCTCAGTGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGTTATGCCGAGGTCAGCTTGGACCCGATGCTGATGGACTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGA Protein sequence MNSRSISTMMVLLVFLVLSGEDMMVRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC
Homology
BLAST of CmoCh16G007920 vs. NCBI nr
Match: KAG6577324.1 (hypothetical protein SDJN03_24898, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31 Identity = 74/114 (64.91%), Postives = 77/114 (67.54%), Query Frame = 0
Query: 1 MNSRSISTMMVLLVFLVLS------------------------------------GEDMM 60
MNS+SI TMMVLLVFL++S GEDMM
Sbjct: 1 MNSKSILTMMVLLVFLLISGEGMMVRSGNWRICRRVLPIFTYQECYDEYCLRLCRGEDMM 60
Query: 61 VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC 79
VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC
Sbjct: 61 VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC 114
BLAST of CmoCh16G007920 vs. NCBI nr
Match: KAE8653553.1 (hypothetical protein Csa_007475, partial [Cucumis sativus]) HSP 1 Score: 60.8 bits (146), Expect = 5.8e-06 Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 0
Query: 1 MNSRSISTMMVLLVFLVLSGEDMMVRSVDGRI-----CQRVLPISTYQVCYDEYCMRLCR 60
M S IS ++L+FL+ SGE+MM+ V G + C R LP+S C + C LCR
Sbjct: 10 MKSNIISA--IVLLFLIFSGEEMMISRVQGIVWPPAKCYRTLPLSDAGTCVNTQCENLCR 69
Query: 61 GQLGPDADGLCLGVYTCNCTYPC 79
Q+ G C G + C C + C
Sbjct: 70 SQIKAVDIGTCFGAHKCLCAFTC 90
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| KAG6577324.1 | 5.3e-31 | 64.91 | hypothetical protein SDJN03_24898, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAE8653553.1 | 5.8e-06 | 37.35 | hypothetical protein Csa_007475, partial [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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