CmoCh12G008190 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G008190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	histone H2B-like
Location	Cmo_Chr12: 7373789 .. 7375363 (+)
RNA-Seq Expression	CmoCh12G008190
Synteny	CmoCh12G008190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTAATTTAACATTATAATAATGCTAATAATTTGTTTACATGAAGTCTTAACCTTTTGTTTTGCAGGTGTAGTTAGGTATAACGACTCTCTATAATAGTTAGTAGGGTACGCTTCATTTTGAGTATAAACTCTCATGTCTTTGCTTTGAGTTTTTTTGAAAGGTCTCGTACCAATGGTAATGTATTTCTTACCTATAAAGCAATGACCATTTGCCAACGTGAGACTCTCTCCTAACAATTTTTCTCTCGAACAAAGTAGATTATAGAGCCTCCCCATGTCTATGGAGTTCTCGAACAATCTCACCTAATCGAGATTCGACTCCTCCTCTGGAGTTTTCGAATAAAGCACCCCCCTTTGTTCAACACTTCAGTCAATTTTTAGCACACCTTCGAGAGCCTCCCTCGACTCTTTCAGGAGCCCTTCATCAGCCTCCCCTAATCGAGGCTTGACTCCTTCTCTGGAGTCTTCAAACAAAGTATCCCTTTGTTCTTTACCCCACTTTCAAGGCCTTTTGAGGCCTATGGAGCCTTCCATCAGCCTCCCCTAATCGGCTCGACTCCTTCTTTGGAGTCTTCGAACAAAGTACACCATTTATTCGACATTTGAGTCACTTTTGACTAAGGCTCACACTTTCGGATTCTAGTGACAATTCTATTGACATGACTAAGTTAAGGGCATGACTGTGATGAGCCTAAACTCTCTTCCTTTGGGTTTCTTAGATTTCATCTCCAATCCCAAAAAGATTTCATACTAATGGAGATTATTCCTTATCTATAAATCCATGATCTTAGACAATATGGGACCCCTTCCCAACCATTCTCGACCATTCTCGACAGGTGTTAGAGAAAGCCGAAAGAAAAACGAGAAGAAAAAGGAGAGGGAAGTAAAGAAGAGGAGAAGCGGCGGGGGAAGAGAAGGGTACAAGAGGTACGTGTTCAAGGTGCTGAAGCAGGTGCATCCGGAGGTGGGGATATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATGTTCGAGAGGCTAGCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTTAACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTGCTGAAGCAGGTGCATCCGGAGGTGGGGATATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTTAACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTGCTGAAGCAGGTGCATCCGGAGGTGGGGATATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTTAACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG

Protein sequence

MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASPNNIQNNSLTTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP

Homology

[Close]

BLAST of CmoCh12G008190 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-09
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 162 QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 204
           +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Sbjct: 201 RTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of CmoCh12G008190 vs. ExPASy Swiss-Prot
Match: P04255 (Histone H2B 1 OS=Caenorhabditis elegans OX=6239 GN=his-11 PE=1 SV=4)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 85  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 120

[Close]

BLAST of CmoCh12G008190 vs. ExPASy Swiss-Prot
Match: Q27894 (Histone H2B 2 OS=Caenorhabditis elegans OX=6239 GN=his-4 PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 86  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of CmoCh12G008190 vs. ExPASy Swiss-Prot
Match: Q27484 (Probable histone H2B 3 OS=Caenorhabditis elegans OX=6239 GN=his-41 PE=3 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 86  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of CmoCh12G008190 vs. ExPASy Swiss-Prot
Match: Q27876 (Probable histone H2B 4 OS=Caenorhabditis elegans OX=6239 GN=his-48 PE=3 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 86  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of CmoCh12G008190 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 159/224 (70.98%), Postives = 168/224 (75.00%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEA--------------GAS 120
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG  E+                S
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRESRKKNEKKKEREVKKRRS 120

Query: 121 GGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL--TTTNSNNVWIMIGGQ 180
           GGG        F+   + H   P+   + QA    NN+ N+        +  +    GGQ
Sbjct: 121 GGGREGYKRYVFKVLKQVH---PEVGISGQAMVILNNLMNDMFERLAEEATKLSKYTGGQ 180

Query: 181 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP 207
           TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
Sbjct: 181 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP 221

[Close]

BLAST of CmoCh12G008190 vs. ExPASy TrEMBL
Match: A0A6J1I190 (histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.3e-61
Identity = 149/232 (64.22%), Postives = 162/232 (69.83%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+TQEPATAETGGD VFRRTI VED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEPATAETGGDEVFRRTIQVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGDIRASHGDFEQ 120
           P+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK R+G           +R S    E+
Sbjct: 61  PRTSTVWGDVKLTRPVDSTSEVTEDKDVTGKMESKPRNG-----------VRGSRKKNEK 120

Query: 121 FDERHLRRPQS------------------------SPNTQASPNNIQNNSL--TTTNSNN 180
             ER +++ +S                        S       NN+ N+        +  
Sbjct: 121 KKEREVKKRRSREGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFERLAEEATK 180

Query: 181 VWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP 207
           +    GGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
Sbjct: 181 LSKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP 221

[Close]

BLAST of CmoCh12G008190 vs. ExPASy TrEMBL
Match: A0A6J1FGB7 (histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEA 104
           PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG  E+
Sbjct: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRES 103

[Close]

BLAST of CmoCh12G008190 vs. ExPASy TrEMBL
Match: A0A6J1I2V8 (histone H2B.4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 7.9e-40
Identity = 98/131 (74.81%), Postives = 107/131 (81.68%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVED 60
           MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+TQEPATAETGGD VFRRTI VED
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDLTQEPATAETGGDEVFRRTIQVED 60

Query: 61  PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGDIRASHGDFEQ 120
           P+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK R+G           +R S    E+
Sbjct: 61  PRTSTVWGDVKLTRPVDSTSEVTEDKDVTGKMESKPRNG-----------VRGSRKKNEK 120

Query: 121 FDERHLRRPQS 132
             ER +++ +S
Sbjct: 121 KKEREVKKRRS 120

[Close]

BLAST of CmoCh12G008190 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.3e-36
Identity = 117/238 (49.16%), Postives = 141/238 (59.24%), Query Frame = 0


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRRT+PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR-------------- 120
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R              
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 ------DGSAEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQAS--PNNIQNNSL-- 180
                 +G   +  SGGG  R  +  +  F       P+   + QA    NN  N+    
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRY-VFKVLKQVHPEVGISGQAMLILNNFMNDMFQR 180

Query: 181 TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 206
               +  +    GG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 LAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 237

[Close]

BLAST of CmoCh12G008190 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-10
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 162 QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 204
           +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Sbjct: 201 RTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of CmoCh12G008190 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 112 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

[Close]

BLAST of CmoCh12G008190 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 103 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of CmoCh12G008190 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 115 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 150

[Close]

BLAST of CmoCh12G008190 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 109 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

The following BLAST results are available for this feature:

BLAST of CmoCh12G008190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGE3	5.3e-09	69.05	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
P04255	6.5e-07	72.22	Histone H2B 1 OS=Caenorhabditis elegans OX=6239 GN=his-11 PE=1 SV=4	[more]
Q27894	6.5e-07	72.22	Histone H2B 2 OS=Caenorhabditis elegans OX=6239 GN=his-4 PE=1 SV=3	[more]
Q27484	6.5e-07	72.22	Probable histone H2B 3 OS=Caenorhabditis elegans OX=6239 GN=his-41 PE=3 SV=3	[more]
Q27876	6.5e-07	72.22	Probable histone H2B 4 OS=Caenorhabditis elegans OX=6239 GN=his-48 PE=3 SV=3	[more]

BLAST of CmoCh12G008190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBI7	1.3e-66	70.98	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]
A0A6J1I190	1.3e-61	64.22	histone H2B, gonadal-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468518...	[more]
A0A6J1FGB7	1.1e-44	97.09	histone H2B.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]
A0A6J1I2V8	7.9e-40	74.81	histone H2B.4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468518 PE=3 S...	[more]
A0A0A0LSH9	5.3e-36	49.16	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]

BLAST of CmoCh12G008190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08170.1	3.8e-10	69.05	Histone superfamily protein	[more]
AT1G07790.1	2.3e-07	69.44	Histone superfamily protein	[more]
AT2G37470.1	2.3e-07	69.44	Histone superfamily protein	[more]
AT2G28720.1	2.3e-07	69.44	Histone superfamily protein	[more]
AT3G46030.1	2.3e-07	69.44	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 183..196 score: 75.78 coord: 153..170 score: 34.13 coord: 170..183 score: 64.49
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 123..198 e-value: 6.2E-4 score: 24.0
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 159..200
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 143..199 e-value: 1.7E-13 score: 52.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 161..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..148
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 159..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008190.1	CmoCh12G008190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity