CmoCh11G018810 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G018810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	chromatin remodeling protein EBS-like
Location	Cmo_Chr11: 13101521 .. 13104156 (+)
RNA-Seq Expression	CmoCh11G018810
Synteny	CmoCh11G018810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTAATCTTCTGTAGCGTTGCGACTCGAACAGTATCTTAGATTATTAGCGGGGTTAATTCATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACGTATTGTCTCTTTGGGAACAAACATGATTTTTGTTCTTCCTCTTGTTCTTCGTCTTCTTCTTTTGTTTTTGTGTTCAAAGCGACGCTTAATTGGTTTGCATTTTCTGCAATTGCTTTTGGTTGCTTCTGGTGAGTGTTCATTGATTTTTGGAATTGCATTTCTGTGGTTGTTGCAGCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTGAGTTCTATGGTGTACCTTGTTCCTTACATGTTTCTACTAAAGCAATCTCATGTTGGTAATTATATAAGAAAATTTGTGGTTTATCTGTGTTTTGGGTTCTTTTTTTTAATTGCAGGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTAATCTCAACCTACTTTTGCAGCTATGTGCTTTGTTTCCTTGGGTGCAAATTTAGGGAGGATAATCTGATGCTTGCTTGTTTTATAACTTCGTTATGTAGCTTTTGTTTGGAGATAGTGTCGTGTTGTTCACCCGTTGCAGGCTATTATATGTCGGTTTTTCTTGGAATTTTAAAGATAGGCACTCTGTTCAATAACTTGTTGTGCCATTGTTAGGGTGATGCACCAAAATGTGAACAAGAATGTGGAGATGGAAAGCCTTGTTTTCTCGTCCTCTCTAAACTAACATATATGTTTTGCAGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGGTAAGGGATGTTGATTCATCTTTACATGAGAGAAATACTGCTAAAATCGTATGACTTATGTTAAAATGTAGAGGAGCTGCAGAATTACTTGAGAACATTATGTGCCTCTTCTGGTCAAACCATTAGAAATTCAATAACTGGTATGCCTATAAGCAAAGTGATGATGTTGGCAAGAAATGCCAATAAAAGAAATCTAACATTTATGCTTTTGCTAAATTTTATTATCATGGAGATTTTTTGTGTAGACTACTGAATTCTCGTTATGTGCTGCTAGGCTGAAGTTTGAAGTCCTATTAGGGTAATTCTTGTATGCATTCTGTGAGATCCCACATCAATTGGAGAGAAGCATTCTTTTAAGGATGTGGAAACCTATCCCTAGCAGATGCGTTTAAAAACTTTGAGGGAGCCCAAAAAGGAAAACCCAAAGAGGACAATATTTGCTAATGGTGGGTTTGGGCCGTAACACATTCTATGAAACTTGCTTTGGGAAACTCATTGCATAATATAGGTCTTGAACACAATTTGGTTTAGGTTGATTGATAACTTCATTTTAGTTGGTACTCCTTTGTCTCTAACTGGATAGTGGTACTGTATTTATGCTTATTTGGTTAGGTTGCAATCAATAAAATATGAAATGACACATAATTGAAGTTGATTAATTGATGTGCACTAGAAGGCACATTCAAACCTTTTGTTTTGCCTAGGAATACTCTTCCCTCCCGGACTGCCCTTTGTGCACGAGTAGTTCACATTTGGTGCTACATTTTCTTCTTGATGACTTTGGTTGTATTGGAGCTCTAAAGTTTGTCGTTTTTAAGCAACTCTGAGTCGACTATTGGAGCTCTAAAGTTACCATGTTGTTTCAAGTTTTTAAGCAACTCTTGACGACTTCGTTTTAAGTTTCTCTGAGTCGACTATTGGAACTCTGAGTCAACTCTGTGTTGAACATAGTGTAGTATTAGTGAACAACTGATTTGGGACAATCCCCAATGTTTGGTGTAAAAGGGTCAGAGGCAGTGTAACACACTGAATTTCTGTCTCGTGCTCTCTGGTTTTTATTTATTGTGAAAGGATTTAGGCAATGAAACAGAAATATGGATTCTCATGTTGAATTCTCATGCTAGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTAAAACTACAATGTTCAAATACATTTACGTGTGCTAA

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTAATCTTCTGTAGCGTTGCGACTCGAACAGTATCTTAGATTATTAGCGGGGTTAATTCATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGACTACTGAATTCTCGTTATGTGCTGCTAGGCTGAAGTTTGAAGTCCTATTAGGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTAAAACTACAATGTTCAAATACATTTACGTGTGCTAA

Coding sequence (CDS)

ATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGACTACTGAATTCTCGTTATGTGCTGCTAGGCTGAAGTTTGAAGTCCTATTAGGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTAAAACTACAATGTTCAAATACATTTACGTGTGCTAA

Protein sequence

MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKTTEFSLCAARLKFEVLLGWNQSVGRDDWLMKVHGSDKEVRFPAPLVSVNVDVVEMYSEDKILCSHKPEVLFFKTTMFKYIYVC

Homology

[Close]

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: F4JL28 (Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 4.0e-103
Identity = 168/207 (81.16%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 2   AKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVR 61
           +K K G+K+LDSYTIKGTNK+VR GDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  R
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCR 69

Query: 62  WYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFC 121
           WYYRPEES+GGRRQFHGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NVGAEDY+C
Sbjct: 70  WYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYYC 129

Query: 122 RFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNF 181
           RFEYKAATG FTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F
Sbjct: 130 RFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHF 189

Query: 182 LCSDCSSENDAKRSSNAFPVSPSAEAK 209
           +C++CSS++D K+S N F  SP+ + K
Sbjct: 190 VCAECSSDDDVKKSQNGFTSSPADDVK 216

[Close]

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: Q9FEN9 (Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-77
Identity = 135/199 (67.84%), Postives = 156/199 (78.39%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVR 60
           M K K  +K L SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R ++ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDY 120
           VRWYYRPEESIGGRRQFHGAKE+FLSDHFD QSA TIEGKC VHSF +YTKLD+VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLD 180
           FCRFEY + TG F PDRV V+CKCEMPYNPDDLMVQCE C +WFHPSC+G TI+EAKK D
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 181 NFLCSDCSSENDAKRSSNA 199
           NF C +CS +     +SN+
Sbjct: 181 NFYCEECSPQQQNLHNSNS 199

[Close]

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: F4JGB7 (Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04260 PE=3 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 1.1e-71
Identity = 142/230 (61.74%), Postives = 167/230 (72.61%), Query Frame = 0


Query: 2   AKTKPGKKDLD--SYTIKGTNKIVR-----PGDCVLMRPSDSDKPPYVARVEKIEADHRN 61
           +K K GKKD+      I   N IV       GDCVLMRPSD+ K PYVARVEKIEAD RN
Sbjct: 12  SKIKLGKKDIKILGREILLGNVIVEVGFFTVGDCVLMRPSDAGKAPYVARVEKIEADARN 71

Query: 62  NVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNV 121
           NVKV  RWYY PEES GGRRQ HGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NV
Sbjct: 72  NVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENV 131

Query: 122 GAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDE 181
           G EDY+C F+YKAATG FTPDRVAVY KCEMPYN D+LM +   C    H +C+G+TI+E
Sbjct: 132 GVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSDELM-ELLLCHYRVHLACVGVTIEE 191

Query: 182 AKKLDNFLCSDCSSEND-AKRSSNAFPVSPSAEAKTTEFSLCAARLKFEV 224
           AKKL++F+C +CSS+ D  KR  N F  S + + K +   +   R  +E+
Sbjct: 192 AKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLKPSAEKMIDVRASYEL 240

[Close]

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: Q9P281 (BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC1 PE=1 SV=4)

HSP 1 Score: 65.9 bits (159), Expect = 8.9e-10
Identity = 38/125 (30.40%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 23   VRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82
            +R GDC +   +     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L
Sbjct: 2515 LRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGKRQCDGKNAL 2574

Query: 83   FLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNV-----GAEDYFCRFEYKAATGGF-TPDR 142
            + S H D     TI  KC V + + Y ++          + Y+    Y   TG   T D 
Sbjct: 2575 YQSCHEDENDVQTISHKCQVVAREQYEQMARSRKCQDRQDLYYLAGTYDPTTGRLVTADG 2634

[Close]

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: Q3UHR0 (BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahcc1 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 23   VRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82
            +R GDC +   +     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L
Sbjct: 2519 LRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGKRQSDGKNAL 2578

Query: 83   FLSDHFDVQSAHTIEGKCTVHSFKNYTKL----DNVGAED-YFCRFEYKAATGGF-TPDR 142
            + S H D     TI  KC V   + Y ++         +D Y+    Y   TG   T D 
Sbjct: 2579 YQSCHEDENDVQTISHKCQVVGREQYEQMMRGRKYQDQQDLYYLAGTYDPTTGRLVTADG 2638

[Close]

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A5D3C9X7 (Chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004500 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.8e-142
Identity = 251/302 (83.11%), Postives = 265/302 (87.75%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKL+NVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLENVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAKTTEFSLCA---ARLKFE------VLLG----- 240
           FLCSDCSSEN+AKRS NAFPVSPSAEAK  +  L +    R+K++      +LL      
Sbjct: 181 FLCSDCSSENEAKRSLNAFPVSPSAEAKVFQDHLSSQIIVRIKYQKKRSEWILLNETDIR 240

Query: 241 ---------WNQSVGRDDWLMKVHGSDKEVRFPAPLVSVNVDVVEMYSEDKILCSHKPEV 280
                    W+QS GRDD L+++HGSDKEVRFP P VSVNVD VEMYSEDKILCSHKPEV
Sbjct: 241 ILVLNSHARWSQSAGRDDGLIRIHGSDKEVRFPGPFVSVNVD-VEMYSEDKILCSHKPEV 300

[Close]

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A6J1JN00 (chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC111486148 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.4e-121
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 209
           FLCSDCSSENDAKRSSNAFPVSPSAEAK
Sbjct: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 208

[Close]

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A6J1ESB9 (chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437125 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.4e-121
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 209
           FLCSDCSSENDAKRSSNAFPVSPSAEAK
Sbjct: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 208

[Close]

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A7J6HIS8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018649 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 5.4e-119
Identity = 211/273 (77.29%), Postives = 232/273 (84.98%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNK+VRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKVVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDH+DVQSAHTIEGKCTVH+FKNYTKL+NVG EDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLENVGTEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAKTTEFSLCAARLKFEVLLGWNQSVGRDDWLMKV 240
           FLCSDC+S++DAKRS NAFPVSPS E K    S         V +G ++SVGRDD  +  
Sbjct: 181 FLCSDCNSDDDAKRSLNAFPVSPSVETKVRTHS----PEHLFVFVGLSRSVGRDDLFI-- 240

Query: 241 HGSDKE----VRFPAPLVSVNVDVVEMYSEDKI 270
            G  KE    +     L+ +N  +++M++   I
Sbjct: 241 -GCSKEYLVSLALAPALLKLNSPLLDMFTSQAI 266

[Close]

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A6J1C3E6 (chromatin remodeling protein EBS-like OS=Momordica charantia OX=3673 GN=LOC111007999 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.6e-118
Identity = 203/208 (97.60%), Postives = 207/208 (99.52%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPG+CVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGECVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKL+NVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLENVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 209
           FLCSDCSSENDAKRS NAFPVSPSAEAK
Sbjct: 181 FLCSDCSSENDAKRSLNAFPVSPSAEAK 208

[Close]

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G22140.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 375.9 bits (964), Expect = 2.9e-104
Identity = 168/207 (81.16%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 2   AKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVR 61
           +K K G+K+LDSYTIKGTNK+VR GDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  R
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCR 69

Query: 62  WYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFC 121
           WYYRPEES+GGRRQFHGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NVGAEDY+C
Sbjct: 70  WYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYYC 129

Query: 122 RFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNF 181
           RFEYKAATG FTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F
Sbjct: 130 RFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHF 189

Query: 182 LCSDCSSENDAKRSSNAFPVSPSAEAK 209
           +C++CSS++D K+S N F  SP+ + K
Sbjct: 190 VCAECSSDDDVKKSQNGFTSSPADDVK 216

[Close]

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G22140.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 375.9 bits (964), Expect = 2.9e-104
Identity = 168/207 (81.16%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 2   AKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVR 61
           +K K G+K+LDSYTIKGTNK+VR GDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  R
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCR 69

Query: 62  WYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFC 121
           WYYRPEES+GGRRQFHGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NVGAEDY+C
Sbjct: 70  WYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYYC 129

Query: 122 RFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNF 181
           RFEYKAATG FTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F
Sbjct: 130 RFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHF 189

Query: 182 LCSDCSSENDAKRSSNAFPVSPSAEAK 209
           +C++CSS++D K+S N F  SP+ + K
Sbjct: 190 VCAECSSDDDVKKSQNGFTSSPADDVK 216

[Close]

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G39100.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 291.2 bits (744), Expect = 9.2e-79
Identity = 135/199 (67.84%), Postives = 156/199 (78.39%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVR 60
           M K K  +K L SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R ++ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDY 120
           VRWYYRPEESIGGRRQFHGAKE+FLSDHFD QSA TIEGKC VHSF +YTKLD+VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLD 180
           FCRFEY + TG F PDRV V+CKCEMPYNPDDLMVQCE C +WFHPSC+G TI+EAKK D
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 181 NFLCSDCSSENDAKRSSNA 199
           NF C +CS +     +SN+
Sbjct: 181 NFYCEECSPQQQNLHNSNS 199

[Close]

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G04260.1 (Bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-69
Identity = 127/194 (65.46%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 31  MRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDV 90
           MRPSD+ K PYVARVEKIEAD RNNVKV  RWYY PEES GGRRQ HGAKELFLSDHFDV
Sbjct: 1   MRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDV 60

Query: 91  QSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPD 150
           QSAHTIEGKC VH+FKNYT+L+NVG EDY+C F+YKAATG FTPDRVAVY KCEMPYN D
Sbjct: 61  QSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSD 120

Query: 151 DLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSEND-AKRSSNAFPVSPSAEAKT 210
           +LM +   C    H +C+G+TI+EAKKL++F+C +CSS+ D  KR  N F  S + + K 
Sbjct: 121 ELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLKP 180

Query: 211 TEFSLCAARLKFEV 224
           +   +   R  +E+
Sbjct: 181 SAEKMIDVRASYEL 193

[Close]

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G39100.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-65
Identity = 115/163 (70.55%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVR 60
           M K K  +K L SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R ++ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDY 120
           VRWYYRPEESIGGRRQFHGAKE+FLSDHFD QSA TIEGKC VHSF +YTKLD+VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW 163
           FCRFEY + TG F PDRV V+CKCEMPYNPDDLMVQCE C +W
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEW 163

The following BLAST results are available for this feature:

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JL28	4.0e-103	81.16	Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=...	[more]
Q9FEN9	1.3e-77	67.84	Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=...	[more]
F4JGB7	1.1e-71	61.74	Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04...	[more]
Q9P281	8.9e-10	30.40	BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC...	[more]
Q3UHR0	1.2e-09	32.00	BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahc...	[more]

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9X7	7.8e-142	83.11	Chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1JN00	3.4e-121	100.00	chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC11148614...	[more]
A0A6J1ESB9	3.4e-121	100.00	chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437...	[more]
A0A7J6HIS8	5.4e-119	77.29	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018649 PE=4 SV=1	[more]
A0A6J1C3E6	1.6e-118	97.60	chromatin remodeling protein EBS-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]

BLAST of CmoCh11G018810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22140.1	2.9e-104	81.16	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G22140.2	2.9e-104	81.16	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G39100.1	9.2e-79	67.84	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G04260.1	3.9e-69	65.46	Bromo-adjacent homology (BAH) domain-containing protein	[more]
AT4G39100.2	1.2e-65	70.55	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 140..187 e-value: 4.7E-10 score: 49.4
IPR001025	Bromo adjacent homology (BAH) domain	SMART	SM00439	BAH_4	coord: 21..136 e-value: 2.5E-42 score: 156.6
IPR001025	Bromo adjacent homology (BAH) domain	PFAM	PF01426	BAH	coord: 23..135 e-value: 7.4E-23 score: 80.7
IPR001025	Bromo adjacent homology (BAH) domain	PROSITE	PS51038	BAH	coord: 21..136 score: 23.482244
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 140..188 e-value: 2.1E-10 score: 40.3
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 138..189 score: 9.2497
IPR043151	Bromo adjacent homology (BAH) domain superfamily	GENE3D	2.30.30.490		coord: 1..133 e-value: 5.8E-31 score: 109.5
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 134..201 e-value: 1.4E-20 score: 74.4
None	No IPR available	PANTHER	PTHR46364	OS08G0421900 PROTEIN	coord: 1..208
None	No IPR available	PANTHER	PTHR46364:SF12	SUBFAMILY NOT NAMED	coord: 1..208
None	No IPR available	CDD	cd04714	BAH_BAHCC1	coord: 22..156 e-value: 1.44222E-58 score: 181.446
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 141..186
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 130..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G018810.1	CmoCh11G018810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007165	signal transduction
cellular_component	GO:0000159	protein phosphatase type 2A complex
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019888	protein phosphatase regulator activity
molecular_function	GO:0016740	transferase activity