CmoCh11G013870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G013870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase family protein
Location	Cmo_Chr11: 9710942 .. 9720385 (-)
RNA-Seq Expression	CmoCh11G013870
Synteny	CmoCh11G013870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGTCGGAAGAGAGAGTAGGGAGCCATGGAAGGGGCATCGTACCAGCGCTTTCCGAAGGTGAAGATCCGAGAGCTCAGAGATGACTATGCCAAATTCGAGCTCCATGACACTGATGTTAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTCCCCACCATCGCCATCGACCTGGTAGAAATTGAAGTGAACTCCTCAGTTCTCAACGATGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACTAGCGAGCGTGCCATGTCTATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGTGCCAAGTGCCACTCTGACCAAACCCTAGACGTCTCCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCTGTTGATTTCTCTGATTCTGCAGCTGCTGCTGGTGAAGCGCTTGATACCAAGTATTTCCTCTTACTCTCATGTGTCTCGTCTCGTAGACATGTTTGTTGATTCTATTTTCCCAGCGAGATTCATTTGAGCTTTTAGGTGATTATTGCATGTAGTTGGGTAGACTTATTCGTGGTCTGTACTGTTAAGTATGCAACGACATCTGCTATTCGGTTTACAAATGGAAGGTAAATTTTTGGGTGAAAATACATCTTAGAGATAGTCTATCACTTCTACTTTGGAGCTTGACCGCCAAAGTTATAATGCGTTCTTTCTTTGCTATGCAACATTCCTGCATTATTGTAAGGTAACATTCTTTTCATTTTCTATTGGATGCTGTCATTTTCCTCTGCTTCTTGGTTCACTCACATGGTAGCAATTTCATGTTAGGCGGATAGTTGTGATAACATGCTTGTGTTAGAACAGGTTTATGAGTTCATCTTCATGGTTCTGGATTTCGCTTGTATTTTTTTGTGCTTTGGTTTTTATGCTTCATGTTCTATGGTGAGCAAACATAAATGTTGGGACACCAATAATCTGTTTGACTGAATGCCAACGCACCTCACTACCTTAATGATGAATTTTCTTGCATTCTACTAAATTGCCTGTCTGAAATTTACATAAAAAGGAAAAAAAAAAAATTGTAATGCGGAAAATATCATTTTAATCTAGTATCATTGTGGTTAGTGAAATAATTGCTCCTCAATTTGAGCGGGTTTTGTGATAATTGTAGAGGAATAATCATTGTGAAGCTACGTCGGGGTCAAGAATTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAACCAAGCATTCACATCAATGAAGATCTAATGGAAACATTAACACTAGAGGAAAAGACTTCCTGGGTTGAAAGTAGCCCAACCAAGGTCTTTGAATTGGATCCTGTTACCCACCAGGTTCTTCTCGCATAACCTCCATTTCTCTTTCTTTTTATTTCTTGCAATGGCTTTCTGAAATTTTCAAGCTGCTCTCTGTAATATTATGCAATTTCCCAGAGGGTTGTCTAGAAGAGCTGATCTGAACTGTATATTTCCTCTAATATCACTTTCTGTTGTTTATGGTTTGTCATGCGGAGTTGGCATATTTGTAACTTTTTAAAATAAACTATAGTACTGTGCTGTTTCTATCGCTTCTTGTAAGTGGGAGAGCTAATATAAGAAGCAATAAAGGTATTAGCTTTGTGGTGGATTTGTGTAACGACCTACTTTTCGAGGGACTCGAGGCATGAATTGCCACTAACTGGCGCAGAAATTGAAAACAACATAATAATTTGATTTAATTTGAAAACATGCATGCATTAACTTTAAATCAAGATAAAACAGTACAAGTCCATAAAAAAGACATCAGGGACAGTTTACAAAATACAACATCAAAACATGTACATGAAAATCTTCAAGAGTTTGAAATCAAGACTCTATTCAACCTCTATAGCCCCATAGCTTGATACGCCCTCACCTCGATCCTGCAATTTAGTTTCCATTTGACAAAAAAAAGTAGAATGAGTGAGCATAAAAATATTCGGGAAGTAGCTTGCTTGTAGGCTCTTAGCTTATTCTAAGTCTTATGTCATACACTTTCGTTAAGTTGTTCATGTGTCTTATTACGTACCTAGATGTCACATTTCTAAGTCATAGGCTCATCTAGGTTATGCTAGCTCACCCAAGCTCAACTTAGAGTTCTTGTTTGGTAATTTCGTGGCTTCTCATCATTCAGCACTATTAGAGCTCTTATTGATTCATTGGTTCTTGTAGTTTGGTTCCTCGAAGCTCAATCAATTCATCGGGAGCATCATAAGGTTCTAGGATAACCCAACTCTTTACTAGTTCCTTCATTCATAATCTACTTGCATATCATGCACACTTGAGGCACAACCTCATTATGGTTCTAACTCATAATCTCATCATACAGTTACAGACACTATCAACCGAGACAGATTCTCTATTAGGGGTTAGTTGGCATCTCTATAGACATACATTTAACCACTTGGGCCGGTGGGAAATCCCAGGTTAAATGGAGAACGAGGGAGGGAGTAGGGAGAGATTCTTTCCTATTAGATAGATTACATTCTGTAATTCTGTGACTTCAAAAAGAAATGCCTAGATCTTCTACATGTTCGAAAGCTTTTTGTTTGTGTTCTATGGAAGTCTTGAGATGGCAACTCTGGTCCTTTATGATGTATACCTTCTTTGCATAACACAATTCAAGTGTTTTCCCCCTTCTGTTTCTTTTAATAGGAAATAACATTTCAATGCGATGAAATATACAATAAGTAGCAGTGCTGACAAACTCATTGATTAAGAAAAACCTTCAGGTTAGCCAATAGATCCTCTAAACTGTAGTTAGAAAAAAGGTGCATTTACACCAAGTAAAGCAAGAACAAGAATTAAATTATAGAAGTATTTGAAAGAGACTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCTGCTTATTCCTTTCTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTGTTAGAAAGGCTGCTTATTCCTTTCTAACCAAAAAATAAAAGAACCCAGAAAAACAACCCATGTAGATGAAGAAAAACTTGTCTAAATGAAGTGTGGAAGAAGACAGATCCTTGATTTGTGCCTTATTGGAATAGATTGAAGTGGAAAGGGGCTATGATTAAGCTGGACATCAAATAAGCGTTTGATAAAGTGGATTGGGACTTTCTTGATCTCCTCCTACAAGTTGAAGGATTTATCTCCCAACGGAGAGCATAGATCAGTGCCTGCATTTTCACCAAATTACTCTATCATCTTTAAAGGGTGCCCGTGTGCTAAGATTTTGGTATCGAGGGGTCTTAGGCTTGCCTTATGAACCATGCTGCAGAAAATTGGTCCTTAAAGGGTTTCTCATTGGTTTGAGAAGAGCGTAGTATCCATCATTTACAAATTTTGGATGATAGTGTTCTCTTCTCCATCCTTGATGACAGTGCTATCCACAACACTTTCTCCATGAGTGAAATCCTTTGAGATGGCTTCAAGCCTAAACATTAATGCCGAAAAGTTCAAGATTTTGGGCATCAACTTAGAAGAGGAGGAGCTGGAAAATTTGGCCTCTTTGTTTGGTCGGAAAGGGAAGCTGGCCGAATGTCTACGCCACAAAAATAGAGAGGAGGTTGCAAGCATGGGAGTCTGTCCATATCTCAAAGGGAGGTTGTCTGACATTATTAGAAGTGTCCTTTCAAATCTTCCCACTTACTACTATCACTGTTCTCATTACCAAAAAAGGTTGCTGCCATAATAGAAAGCACATGAAGCTTACATTAAAAATAAAGGTCCGATGGGAGAAAATTATTCTTCCCTCAGTCAGTTGTGGTCTTGGCATCCAAATATCTACCAGAAGAACCACACTCTCCTTGCCAAATGGGCTTGGCGGTTTTGGTTTGAAAAATCAGCCCTTTGGAGACATGAATATTGCTAAATATGGGTCAACCCATTTCAATCTTAAACTGAGATCCTTAATGGTCCGCTCATAAAATGGTTCCTGGAAGGTCATCCTCTGTATGCAAGACCTCATCTTCGACCGATCTTTGACCCATCTTCGTCCATATTCATCATAGAGTTGGGAATGGAGAAACTACTTTTTGGCATGATGACATGTTGCCCTGTGGTCCACTTGCCCACTGGTTCCCTCTATTATTCTCCATCTCAAACATTAAGGCAGCTTCCATTCATGATATCTGGAGTGTTGAAAGGAGCTTTTGGGATTTATCTTTAATAAGGAACCCCAAGGAGGAGGAAATTTCAGAATGGGCTGATTTATCCACAAATCTCCTTCCTATCCAACTCTCTCCTACTTGTGTTTCATGAGTTTGGAAATTGGAAAATGATGGCATTTTTTCTACAAAGTCTCTCCTAATGGACTTTGTCACCAACAGGAAAATCTTGCCTGATGGCTTTACAAATATATTTGGGAAGCCACCTGCCTGGAAAAAAATAAATTCTTCATATGGGAAGTTGCTTGCCTTGCCATCAACATGCATGAGAAACTCCAGCAATGCATTCCCCACATGGTTCTCTCGCCCCAATGGTGCTCTATGTGTAAAAGGGATGCTGGATCTCAAGACCACCTTCTCAATAATTTTTTGTCTTGCCTCCCTCTGGACATACCTTATTTCTGCTTTTAATTGGTTGATTCCATATCCTGGCAATCACATCTTCTTGCATCCATGTTATCAGGGCATCCACACAAAAAAGAGAAGTACCTTTGGGAAAATCTCATCAAAGCTTTCTTTTGGGTTACTTGGACTGAGCGCAATGAATAAATCTTTCAAAACAAGGAGAGGCCTGTTGAACACCTTTTGGATAGTATCATTTATCTTACTCTATCTTGGTGTAAAGTGATACCTCTAATTTAATCCTTACTCTTTTGTCTCTCTTTTCTCTGTTGTGACCAATTGGAAAAGTCTTTTGTAACTCCATTGCTTGAAATTTCTTTTCCCTCTTTTGCTTATCCAAACCAAAGTAGTAATAATAATAATAAATAAATAAAAATAAAACTTGTATATGTTGGAGCATGAGTAGAAAACATGGTTTTGAGTTGAGCTTTTCATGCACATAATACACCACTCATTGATAAACCTATAGAGGGTTGATATGAAGTCCCTTGGGACCAAGTAACTCGATACCAGAAGAGTTAAAATCTCTGAGGCAAATAGAGCTCAGATACTAAATGGTGTTTACCCCCTTGGAAATTGAAGTAAGAACCGTTTTTTTGGTATCAGAGCACTTTGGTATCGTTTCAAGGGCACTGCTTTTGTAAACTGTTGTGTGAGAGTTAATATTCCAATGACTAAGCAAATTGGAATTGCATTATACTATGTGGGAGGACGCTTTTCAATCTTTCAGGGAGCACTCTAGCTATAATCTTATAGATGCATGGGACAAGGCTGATAGGGCAGTAATTGTTTGCTGTATTTGCTTCAGCTATTTGGGAATTGGACCTATATAAATTTCATTAAGGCTAACATTTATAAGGCCATTCTTTAAAGTTGGGGAATTCTGTCGCAAGGTCTTCTTTAACAATGTCATGATTTTTTGGATTTGTCACTTTTTTATAAGCACTGGAAGCCATTGTATCTTGCGGTATCTTCACTTCGAGAAAAGAATCAGCTTAAAGGAGGTACTCATTCAGGTGTAATTGGTGTATTAGGAGAAAATTTTCATTCTTGCTGCCTCTCATGTATGACGTAAAATTTAAGATGGGCTTTCATCTTTTTATTTAATCGTAGTAATACCCAAATTCTGAGATACTTTGCTTACTTATGGCTAAAGAAAGTATGAAAAACGAGTGATCCAAACTTAGCCAATGAATTTTTTATTTTTTATTTTTCATTTCACTTGTTTAACTTGCTGCTGCTTATTCTGTTTGTAAAGGTTCTGGTGGTTGATCCAGAGGCATACACTTATGATGATGAAGTGATTAAGAAAGCAGAAGCAATGGGTAAAGCTGGACTAGTGGATATCACTGCGAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATAAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAACTGGATGCAGTCCGCCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCAGATACCAGGCCTTCCCATATGTTTCTAGGAGGTTAGGTCAACTGTAATTTTGTTTTCCTAAACAATCTAGTTTTCTGTACTGATGAGCCTGGTTTAGTGCATTCTTTTTCACATATTGGATGCATATGTAGCTTCCGGATATAATTATAATGTAGTATCTTTGGCTTGGTTGGCTCATCCTCATGTTTGACCTGGTTCAATGTATTATGGATGATAGTTAATTCAGCTTCTTCCTTGGGGGGTTTTTTCCCAGGCAATGCCTTGATTGTTAATTTTCCAGAAGCTGCTTCCTTGGGGTAGTTTTTGCTCTCTTTTAAATGACATGGTGACTTGCCCCAAGGGGGTGTAATAAAAACAGCCCCTCCTTAGCCAAATGACATGGTGACCTGGTTCTGTGTGTAATATAATGAAATTTTGAATTGCTTCTAGGTTCAGTGATCTACTTAACGGGTGGTCATTTGCATGAATAACCCAATTTGGATTGGCCAAGGCTAATTATAACTTGACCAACCTTTCCCTTTTCCCTTTTCCCTTTTCCCATCATATGTTGGCATGTCCTCCAAGGTCCTCAAAGAACACTGGTCAATAAAGCCCTTGGTCCAAATGACCCCAGATGCTTTTCATCAAAAGTATCGGGATCTTGTTGGCCAGGGTTTGTCCTCTCTGTGGCTCCCAATCTTAGATTATAATGGTCATCCTATTTCCTTAAATGACATGAACATTCTTCTTTCCTAGAAATAAAGGATCAAATTTTTGTGGACTTTTATAGGCCTATTAGAAGTTTCCAGACTTGGGCCAATTTTGAGACCCAAGCTGCCTTTGTTTCTAACTCATCAGTGATATATTACTTTCTTACTTTGGTTGACTGCGCAGAAGTTTGAGTTTCTGTTTTCAGGTTTTAAGAATAATTGTTTAGGGGCTTTCGCGATTCGAAGTGCTTTTTTTAGATACTCTTTCTAAATCACCATGTCCCTTAGATTTTGTTTATTTTTACTTCTTGGACTATTTAGCCTTTGAACATCTTCTCTTTCATTGTTCATTTGATTAGATGTGAGGATTATTTGTTGGCTGGTGGAAGCTCTTACAGGTTGGAGCTTTAGAAGAAAGGCTAATAATCACAGAATTCTTTTGTAATAAGTCTTCTTTATGTTCTTTTCCTATATATCTTTCTTTATTTCTCATAAAAACAACAAAAGAAATAGAAGAGATAGTAGGTTGACACTTCTTGGTTTCACTCTTGAGTGTTGTAGGGTTGGGAATAATCGACTTAGGCATTGCATGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAATCATTCATTATAAGAGTGTGGAAACCTCTCCCTAGCAAACACATTTAAGAACTTTGAAGGAAAGCCCGAGAGGGAAAGTCCAAAGAAGACAATATCAATTAGTGGTGGGCTTGGACCGTTACAAATGGTTTCAGAGCCAAACATAAGGCGATGTGCCAGTGAAAAGGTTGAGCCCCGAAGGGGGTGGACACGAGACAGTGTGCCAGTAAGGATGTTGGGCCCCAAAGGGGGTGGGGGTGGATTGGGGGGTTCGTGTGAAAACTTCTTTCTAGCAGACACATTTAAAAAACCTCGAGGGGAAGCCCGAAAGGGAAAGGCGAAAAAGGGCAATATTTGCTAGTGGTGGGCTTGGGCCATTACAAATGGTATAAGAGCCAAACATCGGACAATGTGCCAGCGAAAGAGGCTGAGTCCTGAAGGGGGTAGACCCGAGGCGGTATGCCAGCAAACACGCTGGGCCCAAAGGAAAAGGGGGGGGGGGATTGGTTGGAGAAAGGAACGAAGCATTCTTTATAGAGGTGTGAAAATCTCTCCCTAGAGCAAACGCATTTTGGATATGCTAGAAGTGGGCTTGGGCTATATATAATAAACCTCACATTTTGGATCAACCTGACAAATGACAACAACCCTTGATAACAATATCAAAATTGAAAGCAGAAAGTTACTTAAATGAGCAATGAGTTGCCCTCATGATGTTGTAATCATCCAGGCCCCGAAATAAATGAATGTTGGCATCTTAGTTGCATTCACAGTCTTTTAATTTATGAGCAGTAAGTTTGTACCTTCCCTTATGTTTAACCATTGAAGCTCTTCTTTATTATGCCATTGCAGGTCCTGATTCCGACTTTGTACTTTTACTGTCCAAGCAGTTCCCATTATTTCTCTGCACAAAATCTTTATTACCTCTTGTACTCGTGCAATTGCCTTTTACTTCTCTTTCTTTACCATCAGTTTCTTAGGCAATCAATGGATTTTTAATCTTTCTTAGCACAAAAATGGCCTAAGCTTTGTCTGAGAAATTAATTGTTTTGGGTCTCATTATTGTAGGCTGTCAAAAAGATGCTCAAAATTTTGTCTGAGAAAGTCAGACATGGCTGCCTGCACACACCTTTGCTGCTTCCTCTGAGAACAGTTGACTCTTCAAAGGCTGGATTCTTTCGGGGCCCCTAAGGAAGAAAACAACAACCAGAACCTTCTCTGAGTTATTTTGGAATTCAACTACTCTTATTATCTCAACCACTTTAAAATGGACTTTACTCATGTTTCTCTTCATTTCTTCTTATTAACCTGTTTGGGAATGGTGTTACACGGCAAATTTTATTAACCTGTTTTTGTTTTGAGTTGTTCTTAAGAGTATTTGTTCTTTGGACTTGGTGGACAAATCTTTCAAGGGTTTCTGGCTTTTGGTAACAATTTGTATGCTCTAG

mRNA sequence

GGAAGTCGGAAGAGAGAGTAGGGAGCCATGGAAGGGGCATCGTACCAGCGCTTTCCGAAGGTGAAGATCCGAGAGCTCAGAGATGACTATGCCAAATTCGAGCTCCATGACACTGATGTTAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTCCCCACCATCGCCATCGACCTGGTAGAAATTGAAGTGAACTCCTCAGTTCTCAACGATGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACTAGCGAGCGTGCCATGTCTATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGTGCCAAGTGCCACTCTGACCAAACCCTAGACGTCTCCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCTGTTGATTTCTCTGATTCTGCAGCTGCTGCTGGTGAAGCGCTTGATACCAAAGGAATAATCATTGTGAAGCTACGTCGGGGTCAAGAATTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAACCAAGCATTCACATCAATGAAGATCTAATGGAAACATTAACACTAGAGGAAAAGACTTCCTGGGTTGAAAGTAGCCCAACCAAGGTCTTTGAATTGGATCCTGTTACCCACCAGGTTCTGGTGGTTGATCCAGAGGCATACACTTATGATGATGAAGTGATTAAGAAAGCAGAAGCAATGGGTAAAGCTGGACTAGTGGATATCACTGCGAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATAAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAACTGGATGCAGTCCGCCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGATCCAGATACCAGGCCTTCCCATATGTTTCTAGGAGGCTGTCAAAAAGATGCTCAAAATTTTGTCTGAGAAAGTCAGACATGGCTGCCTGCACACACCTTTGCTGCTTCCTCTGAGAACAGTTGACTCTTCAAAGGCTGGATTCTTTCGGGGCCCCTAAGGAAGAAAACAACAACCAGAACCTTCTCTGAGTTATTTTGGAATTCAACTACTCTTATTATCTCAACCACTTTAAAATGGACTTTACTCATGTTTCTCTTCATTTCTTCTTATTAACCTGTTTGGGAATGGTGTTACACGGCAAATTTTATTAACCTGTTTTTGTTTTGAGTTGTTCTTAAGAGTATTTGTTCTTTGGACTTGGTGGACAAATCTTTCAAGGGTTTCTGGCTTTTGGTAACAATTTGTATGCTCTAG

Coding sequence (CDS)

ATGGAAGGGGCATCGTACCAGCGCTTTCCGAAGGTGAAGATCCGAGAGCTCAGAGATGACTATGCCAAATTCGAGCTCCATGACACTGATGTTAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTCCCCACCATCGCCATCGACCTGGTAGAAATTGAAGTGAACTCCTCAGTTCTCAACGATGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACTAGCGAGCGTGCCATGTCTATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGTGCCAAGTGCCACTCTGACCAAACCCTAGACGTCTCCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCTGTTGATTTCTCTGATTCTGCAGCTGCTGCTGGTGAAGCGCTTGATACCAAAGGAATAATCATTGTGAAGCTACGTCGGGGTCAAGAATTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACATTCATGTATGAACCAAGCATTCACATCAATGAAGATCTAATGGAAACATTAACACTAGAGGAAAAGACTTCCTGGGTTGAAAGTAGCCCAACCAAGGTCTTTGAATTGGATCCTGTTACCCACCAGGTTCTGGTGGTTGATCCAGAGGCATACACTTATGATGATGAAGTGATTAAGAAAGCAGAAGCAATGGGTAAAGCTGGACTAGTGGATATCACTGCGAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATAAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAACTGGATGCAGTCCGCCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Protein sequence

MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG

Homology

[Close]

BLAST of CmoCh11G013870 vs. ExPASy Swiss-Prot
Match: Q39211 (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 5.9e-148
Identity = 264/320 (82.50%), Postives = 298/320 (93.12%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+GA+YQRFPK+KIREL+DDYAKFEL +TDVSMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +S+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVTFMYEP I INED+M+TL+ EEK   +ESSPTKVF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of CmoCh11G013870 vs. ExPASy Swiss-Prot
Match: Q39212 (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702 GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 485.3 bits (1248), Expect = 5.2e-136
Identity = 247/320 (77.19%), Postives = 284/320 (88.75%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFEL +TDVSMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +S+DLYS+D TV PVDF+ S ++  ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVT+MYEP I INE++M TLT EEK   +ESSPTKVF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of CmoCh11G013870 vs. ExPASy Swiss-Prot
Match: Q54DH7 (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689 GN=polr2c PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 9.3e-69
Identity = 143/293 (48.81%), Postives = 198/293 (67.58%), Query Frame = 0


Query: 8   RFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
           R P+++I E+++D   F L +TD+S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10  RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69

Query: 68  AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSSKDLYS 127
           AHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DV+S DL S
Sbjct: 70  AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 129

Query: 128 SDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 187
            +  V+PV    +++ + +      I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+   
Sbjct: 130 QNSAVIPVSSQVTSSNSEQE-----IPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVA 189

Query: 188 TFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDP--VTHQVLVVDPEAYTYDDEV 247
           T+ ++P I +N++ ++ LT ++K  WV S PTKV+   P   T QV + DP    Y  E 
Sbjct: 190 TYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLEC 249

Query: 248 IKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR 299
            KKAE+ GK  LV +  K+D FIFTVES+GA+K   ++L AI I+K+KL  ++
Sbjct: 250 KKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

[Close]

BLAST of CmoCh11G013870 vs. ExPASy Swiss-Prot
Match: Q3T0Q3 (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.8e-48
Identity = 117/290 (40.34%), Postives = 169/290 (58.28%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD+++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  V+S+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDE 245
           A V F Y+P     ++ +      +   W +S  +++ E           D     YD  
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELDE-----------DESQAPYDP- 242

Query: 246 VIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 295
                             K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of CmoCh11G013870 vs. ExPASy Swiss-Prot
Match: P97760 (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c PE=1 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 5.3e-48
Identity = 116/290 (40.00%), Postives = 169/290 (58.28%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL ++  KF + +TD+++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  V+S+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDE 245
           A V F Y+P     ++ +      +   W +S  +++ E           D     YD  
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELDE-----------DESQAPYDP- 242

Query: 246 VIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 295
                             K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ----------------NGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of CmoCh11G013870 vs. ExPASy TrEMBL
Match: A0A6J1JIE7 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111486077 PE=3 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.0e-175
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CmoCh11G013870 vs. ExPASy TrEMBL
Match: A0A6J1ELW4 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111434562 PE=3 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.0e-175
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CmoCh11G013870 vs. ExPASy TrEMBL
Match: A0A1S3B3P9 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103485820 PE=3 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 7.4e-170
Identity = 308/320 (96.25%), Postives = 315/320 (98.44%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDHTVVPVDFSDSAAA GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEK +WVES PT+VFELDPVTHQV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CmoCh11G013870 vs. ExPASy TrEMBL
Match: A0A0A0LHS1 (RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 2.2e-169
Identity = 308/320 (96.25%), Postives = 314/320 (98.12%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDHTVVPVDFSDSAAA GEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEEK +WVES PT+VFELD VTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CmoCh11G013870 vs. ExPASy TrEMBL
Match: A0A6J1D221 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia OX=3673 GN=LOC111016637 PE=3 SV=1)

HSP 1 Score: 599.4 bits (1544), Expect = 9.1e-168
Identity = 305/320 (95.31%), Postives = 313/320 (97.81%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE+ +WVES PT+VFE+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of CmoCh11G013870 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 525.0 bits (1351), Expect = 4.2e-149
Identity = 264/320 (82.50%), Postives = 298/320 (93.12%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+GA+YQRFPK+KIREL+DDYAKFEL +TDVSMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +S+DLYS+D TV PVDF+  ++ + ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVTFMYEP I INED+M+TL+ EEK   +ESSPTKVF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of CmoCh11G013870 vs. TAIR 10
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 485.3 bits (1248), Expect = 3.7e-137
Identity = 247/320 (77.19%), Postives = 284/320 (88.75%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFEL +TDVSMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +S+DLYS+D TV PVDF+ S ++  ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240
           WSPAATVT+MYEP I INE++M TLT EEK   +ESSPTKVF +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of CmoCh11G013870 vs. TAIR 10
Match: AT2G15400.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 339.0 bits (868), Expect = 4.3e-93
Identity = 172/231 (74.46%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFEL +TDVSMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +S+DLYS+D TV PVDF+ S ++  ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQV 232
           WSPAATVT+MYEP I INE++M TLT EEK   +ESSPTKVF +DPVT QV
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230

[Close]

BLAST of CmoCh11G013870 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 99/319 (31.03%), Postives = 154/319 (48.28%), Query Frame = 0


Query: 3   GASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G  Y  F KV +  L     +F++   D + ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVS 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAAAGEALDTK------GIIIVKLRRG 182
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKV 242
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L        V   P  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 FELDPV---THQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIK 298
           F+++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

[Close]

BLAST of CmoCh11G013870 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 99/319 (31.03%), Postives = 154/319 (48.28%), Query Frame = 0


Query: 3   GASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G  Y  F KV +  L     +F++   D + ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVS 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAAAGEALDTK------GIIIVKLRRG 182
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKV 242
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L        V   P  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 FELDPV---THQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIK 298
           F+++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

The following BLAST results are available for this feature:

BLAST of CmoCh11G013870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39211	5.9e-148	82.50	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3...	[more]
Q39212	5.2e-136	77.19	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702...	[more]
Q54DH7	9.3e-69	48.81	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689...	[more]
Q3T0Q3	1.8e-48	40.34	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1...	[more]
P97760	5.3e-48	40.00	DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c P...	[more]

BLAST of CmoCh11G013870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIE7	2.0e-175	100.00	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=...	[more]
A0A6J1ELW4	2.0e-175	100.00	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata O...	[more]
A0A1S3B3P9	7.4e-170	96.25	LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS...	[more]
A0A0A0LHS1	2.2e-169	96.25	RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 ...	[more]
A0A6J1D221	9.1e-168	95.31	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia ...	[more]

BLAST of CmoCh11G013870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15430.1	4.2e-149	82.50	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	3.7e-137	77.19	DNA-directed RNA polymerase family protein	[more]
AT2G15400.2	4.3e-93	74.46	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	1.1e-27	31.03	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	1.1e-27	31.03	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..300 e-value: 1.3E-92 score: 323.6
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 23..294 e-value: 5.0E-21 score: 75.2
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 47..179 e-value: 5.1E-87 score: 293.7
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..183
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..182 e-value: 2.1E-32 score: 111.8
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 12..293 e-value: 5.1E-87 score: 293.7
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 10..302
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 3..317
None	No IPR available	PANTHER	PTHR11800:SF15	BNAA09G08480D PROTEIN	coord: 3..317
None	No IPR available	CDD	cd07031	RNAP_II_RPB3	coord: 10..303 e-value: 3.87917E-130 score: 369.625
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G013870.1	CmoCh11G013870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity