CmoCh10G000350 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G000350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr10: 179366 .. 180079 (+)
RNA-Seq Expression	CmoCh10G000350
Synteny	CmoCh10G000350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGCGCCGTGTGATTGGGTTAGAAATGTGATGGGGATGAGCACCATGAAGTGCGATTACACATCAAAAGAGCGTGGGAGGGAGAGGAGAGAATCTCCGGGTAAATCTGGGAATGAAAGGAAGATGCGAGGGGGTGGGGGGGGGCAAGTTGAGCAAGTGGGAATTTTAATTCATTTAATTTATTTATTTTAATTTAATTTATTTGTTGAATGAGGAGTTGCAGTGAAGAAAGAAGGGAGGGAGGCAGGGGCAGGGGCAGCATTAGCAGAGCGTGGTGGTGGCTACTTAGTTTTTGTCGCCAAATTAATAGTTGTTGTTACTTAGGCTTTGCTTCTCCCCGACTCTCATCTCCCCGCTAGTGCTCCCCATACACATTATTACCAATATTTCCCCATTCATTTCTATGTTATCTTCAAATTTATCTTTCCACAATGCAAATAAACCACACAACGCCTCATCACTTGCCCCCTGCCTGCTCAAACCACCAGATGCTTAGCTTGCTCAATCCACACTTTCTCATATTTATGCATCTACAACTCCACTTGCGATACTCTAATTTAGAAACAAAAAAAAAAGATGTAAGATGTGGATCAGATGAGTGGCTCATGGGGTAGCTACCTAGCTGTAATCAATTATTTTTGAGTTTGAATCGTATTGTATTGTAATATCCAGGGTGGTGGTGGTGGAGGGTGGGGGAAGGGGATTTAG

mRNA sequence

ATGGGTTTTGCGCCGTGTGATTGGGTTAGAAATGTGATGGGGATGAGCACCATGAAGTGCGATTACACATCAAAAGAGCGTGGGAGGGAGAGGAGAGAATCTCCGGGTAAATCTGGGAATGAAAGGAAGATGCGAGGGGGTGGGGGGGGGCAAGTTGAGCAAATGCTTAGCTTGCTCAATCCACACTTTCTCATATTTATGCATCTACAACTCCACTTGCGATACTCTAATTTAGAAACAAAAAAAAAAGATGGTGGTGGTGGTGGAGGGTGGGGGAAGGGGATTTAG

Coding sequence (CDS)

ATGGGTTTTGCGCCGTGTGATTGGGTTAGAAATGTGATGGGGATGAGCACCATGAAGTGCGATTACACATCAAAAGAGCGTGGGAGGGAGAGGAGAGAATCTCCGGGTAAATCTGGGAATGAAAGGAAGATGCGAGGGGGTGGGGGGGGGCAAGTTGAGCAAATGCTTAGCTTGCTCAATCCACACTTTCTCATATTTATGCATCTACAACTCCACTTGCGATACTCTAATTTAGAAACAAAAAAAAAAGATGGTGGTGGTGGTGGAGGGTGGGGGAAGGGGATTTAG

Protein sequence

MGFAPCDWVRNVMGMSTMKCDYTSKERGRERRESPGKSGNERKMRGGGGGQVEQMLSLLNPHFLIFMHLQLHLRYSNLETKKKDGGGGGGWGKGI

Homology

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BLAST of CmoCh10G000350 vs. NCBI nr
Match: KAG6589359.1 (hypothetical protein SDJN03_14782, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MGFAPCDWVRNVMGMSTMKCDYTSKERGRERRESPGKSGNERKMRGGG 49
          MGFAPCDWVRNVMGMSTMKCDYTSKERGRERRES GKSGNERKMRGGG
Sbjct: 1  MGFAPCDWVRNVMGMSTMKCDYTSKERGRERRESLGKSGNERKMRGGG 48

The following BLAST results are available for this feature:

BLAST of CmoCh10G000350 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G000350 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G000350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589359.1	1.8e-17	97.92	hypothetical protein SDJN03_14782, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh10G000350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G000350.1	CmoCh10G000350.1	mRNA