CmoCh02G008630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G008630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NusB domain-containing protein
Location	Cmo_Chr02: 5247730 .. 5252800 (-)
RNA-Seq Expression	CmoCh02G008630
Synteny	CmoCh02G008630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTTCACCCGACCGGCCTCCCCTTATCTTTTTCCCTCCAACTCTCTGTTTCATCTTCTCCACCTTCTTTCTAACCCCTCGTTCCCGGCTTAAACCCTCCACGTTCAGCAGAGGTCAACCGGAATTTGATCAGCCATATGGTTTGAAATTCTCCTACGGCCAGCATGGTGGAACTTGTATCAATCGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGTATATCCTTTGCCTTTGGTCACGAACCATTTGAATTCTGAAATGAAGAGGATAGCTTGTGCTTTGATTCTTCATTTCATACTGATTACTTGCTCTGTATGCTTGTAAGCGGAACATTTGCTTTAAAGTTCAAACGCCATCGTTGAATTTTTCTTTTGTAGTCTAAAATTAGGTTAGAACCGATGGCGGTTATATGCAATGTATGGACTATGTTAGAATTCACTATTGGAACCAGAAGTGAAGCTAATATGTTTGATGATAGGTTATGATAAATTTAATGGATAATTTATGCTCTTTTGACGAACTAGACATTAGGTAAGAGTGAATTATGATGCCAAAGAATTGTATTCTTGTTGTTTTGTTTAGTTTTCCTAAAGAAAGTAAAATGGATCTAAGAAAAGTGTATGATCTGGGCTTCTTAAATTTTTCAAAAGTAAAGATCTATGCTCCATGATTTCTTCATATTTCCGACAAACTAGACTTAACTTGGTATGCTTAATTTTTGTTCTTTCTCTGTCTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACACCTCTGTCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTAAGATCCACAACTTCCTTCTCACTTATTATTTCCTATATATATTTATTTATTTATTTATTTATGGATATCCCTTCTGTCTGCCTATGCAGAAAGTTGGTCTAGTCACTAGGAATATGCTCTAAGAATTTGTTTAATTTGAAGACGTGTAATCAATTCTAATCCTGCTAGATCATTCAATCACAGGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGGTAATCTTTGGTCGAGATGTGGTGCTCTGCTGCTCCATATACAATTTGATGCTTTTTTATTGTTTTGGAGAAATAGAAGTCACGTCTTTAACTAAAAAATGACACCAACTTCTTACTTTATCCATTCATACAATTCAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGGTAAATAGTTTTGTGGCTTTTGTATGTATATTATTTGTCCTTATTTCACTCATTACTTTGTTCTAAAAGCACAATTGGGCAGTATTATATGCTTCTCCGCTTTCAATTAGAGATGCCTTTTCTTCATACCATGTACGAAAAGAATTTGAGGGGAAAATCCATCTTCAATTCAAAGTGATATCATGACTCGTGAGATCTGTTGGTCTCGTTTTCTTTTAGATGGAGTTTGTAAACAAGCAGTAGAGAACAAAAACTTTTTGACAAACATCTTGAACGCTAACTCTTGGAGACTAACCTAGATTTGGTTCTAAAATCAATAACACATTGCTTGAACTCTTCAAGAAATATGCAAGCGAAAGTTTTATTTCTATTTGTATATCGATCTGCCAACGTTTATCTCTTTATGCACCACATAAATTGTTGTGACATATTGTAATTACTAACAAACTACTGTCTATAGCTTCTCCTTCTATATGTTTTCATTATAGTTGTAAATACAGTCTTGTCGAACCTCAAAAGTCCCATTTCATTGCTTTTAGTGATAGCTAAGTTCTGTTTCCTGCTTGACTGTATCTCAGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTAAATGTGGTTTTTATTTCTCTGCTTTTGGCAGAGGATGATCTGATGAAAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTATTTATTGGGTGATATAAGGTCAGTCGTCATCTTCATGGTTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGATAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGTTCGTAAAGAGCTTTATGCTACTTTTGTTTTCTGATTTTTCTCTTCTCTTCTAGTTGGGACTACTATAAGTTGAACCATTTGCTGTGGAGCTATAATACTTTTGGTCAATAAGGACCATATAAATAATAAGACTTGAGAGGGAATGAGTTCAAAGTCATGGTAGCTACCTACCTAAAATTTAAATTTAATATCTCATGAGTTATTTGGTAACCAAACGTAGTAGGATGAGATAGCTGTCTTGTGAGAATAATCAAGGTGTGTGCAAGAACACTCACGAACATATATTTATATATTATATACACAAAATTCCTCCCATATTGATCTTTGCCTCTTAGTCATAGCATATGCATGCTTTTTGCACGACTTATAGAAATTTGAAAATCTGTTATATGATGATGGAAAGGGTGGAACCACAAATCTAACTGCAACATATTTCAATGATGGGTATTGTTGAATCTCTCACGTGAGTGTTGGAAACCCTGAGCTTTGATGGTCAACGATTTGAGCTTAGTGGTAAATGTCTTAGGACTCGGCAAATGGTTAATGGTTTCAAAATGTATTGGATCACCATTCCAGAATATTATATCTTGCGGGTTCTTGACAACAGCCTTTATGTTCTTATGATCCAGACATTGGTGTTGCATGAGTAAGCCAAGATCATGCACTTGGACTTGCACTTCTTGAATTAAATTGCGGATTTTTAAAACTTCAAAATTTATAATGCTGACGTAGATTATACATCTCATGCCTTCATATATTTCAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGTAAATACATCTAAAGCTTCTTACTACAAGGTCACAGTTATCCTCTCTTGTATCTGTTAATAGATGTCTGCATCAATCCCGTTCTTTTAAAATTTTCCTGGCGATTGATGAAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTCGTAAGGATATCAAAAATTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCTGGATGGATAAGGAATTAGAGGGCACTTCCCTTCCATGGAAATGGAGTACTACGGAGTTGTAGATGTGTAATTCTTCTAGGGAGATAGTTCCTACAAAAGACTTCGGTTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAAATGAAAATCTGGACTTAGAACATGTATTGTAATCTTTACCTCAGGGTTAAGGTCGACTCCCTGATAAGGAATTTGTTAGATTTTTGATGCAAAAAAGGAGCAATTAGCAACAGAAATCCACCCAGGCCCTCCAAAACAATGAAAAACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACACTGGAAGGATAGCCTTTCCCAACTTCATAGTTATCAAACAACTTAAGGTAGTTGCAATTATTACAGAGGACGTATAAAATAAACATTGTTATGTAGAGGAGACTGGCTGTGTTAAGGAACAGTGATTCGGTCGCACACTAGCTAGCGCTGCTAACACGAACAACCAGAGGACTTGTGACCCTATGGAACCCATCTGACCATTCAATCTCCCCAAAATCATACCTCCCACGAGCTTTCTTGAGTGGGGTTATGGTGATGTAGTAGGAAACGTGCTGCCTAAACCAAGAGAAAAGAAGAATCCTAGGCCATACCAATACTTGCACTCCATTGGGAGGATTCAGCTTAAGAAAGTAGATGGCATTTTTGTTTGCTGCTACATTACGAACAGTCCTTTTGATTGTGGTTGTGGATTTGAGATTTGCAAGTGTAATGGAAGGATAATTGAGATTGGCAATGGAGGTGGATAGAAATGGTGGACAACAAACAAGTGTTTGTGAAGAAGGGTTCACAATCATCCTGATTTGCTGCTCTGTGTACCCAATATTGCAGAGAAAAATAATGTAATCATTGGCTGTCATGTCGTACACTAGTCCTGGATTTACTGCCTTCAATGGGTTCACTTGGCCACCTCCAATGTCGAATGGATCGGATGGTTTCGTGGATCCACCTGCTAGGATGGTGTTGCGAGTGGAGTCTCTCTTGGTGGCTGAATTATGAGCCACGAGTTAGTTAATAAACTGGTTGTTTGAAAGTTCAGAGACTAAAATGAAAAGGACGGGAATGGTTAACCTGTGGTGATGAGGGCAGATCTAATGGCTGCAGGAGACCAGCTTGGATGCAGAGATTTGATGAGGGCAACGACTCCAGAGATGTGAGGGCATGACATTGAAGTCCCTGATTGGAAATTCCATTTGACTTGCCTTTGGCTTTCTCCTTCTGTCGCTGTTGGCCGCACTGTTGGAGCAGTTTCTGGAGGCCATGCCGCCAATATGTTCACTCCTGGGGCACTTATGTCTGGCTGCACCATACATAATACCCTCGTTAGTGTTGAAAATGACCATCATAC

mRNA sequence

TATCTTCACCCGACCGGCCTCCCCTTATCTTTTTCCCTCCAACTCTCTGTTTCATCTTCTCCACCTTCTTTCTAACCCCTCGTTCCCGGCTTAAACCCTCCACGTTCAGCAGAGGTCAACCGGAATTTGATCAGCCATATGGTTTGAAATTCTCCTACGGCCAGCATGGTGGAACTTGTATCAATCGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACACCTCTGTCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGTTGTAAATACAGTCTTGTCGAACCTCAAAAGTCCCATTTCATTGCTTTTAGTGATAGCTAAGTTCTGTTTCCTGCTTGACTGTATCTCAGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGATAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTCGTAAGGATATCAAAAATTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCTGGATGGATAAGGAATTAGAGGGCACTTCCCTTCCATGGAAATGGAGTACTACGGAGTTGTAGATGTGTAATTCTTCTAGGGAGATAGTTCCTACAAAAGACTTCGGTTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAAATGAAAATCTGGACTTAGAACATGTATTGTAATCTTTACCTCAGGGTTAAGGTCGACTCCCTGATAAGGAATTTGTTAGATTTTTGATGCAAAAAAGGAGCAATTAGCAACAGAAATCCACCCAGGCCCTCCAAAACAATGAAAAACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACACTGGAAGGATAGCCTTTCCCAACTTCATAGTTATCAAACAACTTAAGGTAGTTGCAATTATTACAGAGGACGTATAAAATAAACATTGTTATGTAGAGGAGACTGGCTGTGTTAAGGAACAGTGATTCGGTCGCACACTAGCTAGCGCTGCTAACACGAACAACCAGAGGACTTGTGACCCTATGGAACCCATCTGACCATTCAATCTCCCCAAAATCATACCTCCCACGAGCTTTCTTGAGTGGGGTTATGGTGATGTAGTAGGAAACGTGCTGCCTAAACCAAGAGAAAAGAAGAATCCTAGGCCATACCAATACTTGCACTCCATTGGGAGGATTCAGCTTAAGAAAGTAGATGGCATTTTTGTTTGCTGCTACATTACGAACAGTCCTTTTGATTGTGGTTGTGGATTTGAGATTTGCAAGTGTAATGGAAGGATAATTGAGATTGGCAATGGAGGTGGATAGAAATGGTGGACAACAAACAAGTGTTTGTGAAGAAGGGTTCACAATCATCCTGATTTGCTGCTCTGTGTACCCAATATTGCAGAGAAAAATAATGTAATCATTGGCTGTCATGTCGTACACTAGTCCTGGATTTACTGCCTTCAATGGGTTCACTTGGCCACCTCCAATGTCGAATGGATCGGATGGTTTCGTGGATCCACCTGCTAGGATGGTGTTGCGAGTGGAGTCTCTCTTGGTGGCTGAATTATGAGCCACGAGTTAGTTAATAAACTGGTTGTTTGAAAGTTCAGAGACTAAAATGAAAAGGACGGGAATGGTTAACCTGTGGTGATGAGGGCAGATCTAATGGCTGCAGGAGACCAGCTTGGATGCAGAGATTTGATGAGGGCAACGACTCCAGAGATGTGAGGGCATGACATTGAAGTCCCTGATTGGAAATTCCATTTGACTTGCCTTTGGCTTTCTCCTTCTGTCGCTGTTGGCCGCACTGTTGGAGCAGTTTCTGGAGGCCATGCCGCCAATATGTTCACTCCTGGGGCACTTATGTCTGGCTGCACCATACATAATACCCTCGTTAGTGTTGAAAATGACCATCATAC

Coding sequence (CDS)

ATGGTGGAACTTGTATCAATCGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACACCTCTGTCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCATCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGTTGTAAATACAGTCTTGTCGAACCTCAAAAGTCCCATTTCATTGCTTTTAGTGATAGCTAAGTTCTGTTTCCTGCTTGACTGTATCTCAGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGATAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGA

Protein sequence

MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVST

Homology

[Close]

BLAST of CmoCh02G008630 vs. ExPASy Swiss-Prot
Match: Q18B61 (Transcription antitermination protein NusB OS=Clostridioides difficile (strain 630) OX=272563 GN=nusB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-06
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 244 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 303
           KID++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 304 RIINGCLRTFVKDI 316
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

[Close]

BLAST of CmoCh02G008630 vs. ExPASy Swiss-Prot
Match: A7GWZ7 (Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.92) OX=360105 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-05
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 232 VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVIN 291
           +  ++ +D+  LK   +D+++    K+K   R  I+EL IL L + E+   GT   ++IN
Sbjct: 43  IQALETFDAICLKKGELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIIN 102

Query: 292 EAVDLAKRFCDGAAPRIINGCL 309
           EA++LAK     +AP+ ING L
Sbjct: 103 EAIELAKELGGDSAPKFINGVL 124

[Close]

BLAST of CmoCh02G008630 vs. ExPASy Swiss-Prot
Match: Q8GIR7 (Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-05
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 244 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 303
           +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    
Sbjct: 129 RIDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGR 188

Query: 304 RIINGCLR 310
           R ING LR
Sbjct: 189 RFINGVLR 196

[Close]

BLAST of CmoCh02G008630 vs. ExPASy Swiss-Prot
Match: Q5N1J7 (Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-05
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 244 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 303
           +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    
Sbjct: 129 RIDRTLNDVMVDWQLHRVPRLDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGR 188

Query: 304 RIINGCLR 310
           R ING LR
Sbjct: 189 RFINGVLR 196

[Close]

BLAST of CmoCh02G008630 vs. ExPASy Swiss-Prot
Match: B1WXY6 (Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=nusB PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.7e-05
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 244 KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAP 303
           +ID+ + +  KD    R+  ++  IL LA++EI  +    ++ INEAV+LAKR+ D    
Sbjct: 133 EIDEQLEAVLKDWQLKRLAKIDQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGY 192

Query: 304 RIINGCLRTFVKDIQ 317
           R ING LR F   I+
Sbjct: 193 RFINGVLRRFTDHIK 207

[Close]

BLAST of CmoCh02G008630 vs. ExPASy TrEMBL
Match: A0A6J1G8E0 (uncharacterized protein LOC111451776 OS=Cucurbita moschata OX=3662 GN=LOC111451776 PE=3 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 8.5e-161
Identity = 301/331 (90.94%), Postives = 301/331 (90.94%), Query Frame = 0


Query: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60
           MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL
Sbjct: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNT 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI    
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI---- 180

Query: 181 VLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240
                                     EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS
Sbjct: 181 --------------------------EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240

Query: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300
           HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Sbjct: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300

Query: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 332
           PRIINGCLRTFVKDIQETDSTHARVKEVVST
Sbjct: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 301

[Close]

BLAST of CmoCh02G008630 vs. ExPASy TrEMBL
Match: A0A6J1KXJ4 (uncharacterized protein LOC111499665 OS=Cucurbita maxima OX=3661 GN=LOC111499665 PE=3 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.3e-157
Identity = 297/331 (89.73%), Postives = 298/331 (90.03%), Query Frame = 0


Query: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60
           MVELVS+VVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNT 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI    
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI---- 180

Query: 181 VLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240
                                     EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS
Sbjct: 181 --------------------------EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240

Query: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300
           HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Sbjct: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300

Query: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 332
           PRIINGCLRTFVKDIQETDSTHARVKEVVST
Sbjct: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 301

[Close]

BLAST of CmoCh02G008630 vs. ExPASy TrEMBL
Match: A0A5D3DDJ4 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001130 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 6.2e-127
Identity = 239/315 (75.87%), Postives = 260/315 (82.54%), Query Frame = 0


Query: 15  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKE 74
           D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+P LC QASLRASTSF +N V +E
Sbjct: 71  DKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEE 130

Query: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134
            SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLN+R E G
Sbjct: 131 RSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESG 190

Query: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLV 194
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS I                  
Sbjct: 191 YEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTI------------------ 250

Query: 195 IAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWK 254
                       EAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LKI+KVIP TWK
Sbjct: 251 ------------EAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTWK 310

Query: 255 DKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 314
           +KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Sbjct: 311 NKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 355

Query: 315 IQETDSTHARVKEVV 330
           I+ETDST AR K+ V
Sbjct: 371 IKETDSTPAREKQEV 355

[Close]

BLAST of CmoCh02G008630 vs. ExPASy TrEMBL
Match: A0A1S3BNR2 (uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 6.2e-127
Identity = 239/315 (75.87%), Postives = 260/315 (82.54%), Query Frame = 0


Query: 15  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKE 74
           D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+P LC QASLRASTSF +N V +E
Sbjct: 108 DKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEE 167

Query: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134
            SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLN+R E G
Sbjct: 168 RSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESG 227

Query: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLV 194
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS I                  
Sbjct: 228 YEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTI------------------ 287

Query: 195 IAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWK 254
                       EAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LKI+KVIP TWK
Sbjct: 288 ------------EAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDNRALKIEKVIPPTWK 347

Query: 255 DKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 314
           +KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Sbjct: 348 NKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 392

Query: 315 IQETDSTHARVKEVV 330
           I+ETDST AR K+ V
Sbjct: 408 IKETDSTPAREKQEV 392

[Close]

BLAST of CmoCh02G008630 vs. ExPASy TrEMBL
Match: A0A0A0KWZ5 (NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 7.5e-125
Identity = 234/312 (75.00%), Postives = 255/312 (81.73%), Query Frame = 0


Query: 15  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKE 74
           D VI TRPNFHFS  +SGIC+FPF  S+IVP++K+S+P  C QASLRASTSFS+N V +E
Sbjct: 97  DKVITTRPNFHFSYHISGICQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEE 156

Query: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134
            SS+ +SSIE IPK+DKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLNAR E G
Sbjct: 157 RSSISISSIEMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESG 216

Query: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLV 194
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS I                  
Sbjct: 217 YEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTI------------------ 276

Query: 195 IAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWK 254
                       EAEILAAPPK+VYSKLILRFTRKLLVAV D WDS  LKI+KVIP TWK
Sbjct: 277 ------------EAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWK 336

Query: 255 DKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 314
           +KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Sbjct: 337 NKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 378

Query: 315 IQETDSTHARVK 327
           I+E DS  AR K
Sbjct: 397 IKEIDSMPAREK 378

[Close]

BLAST of CmoCh02G008630 vs. NCBI nr
Match: XP_022948088.1 (uncharacterized protein LOC111451776 [Cucurbita moschata])

HSP 1 Score: 576.2 bits (1484), Expect = 1.8e-160
Identity = 301/331 (90.94%), Postives = 301/331 (90.94%), Query Frame = 0


Query: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60
           MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL
Sbjct: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNT 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI    
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI---- 180

Query: 181 VLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240
                                     EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS
Sbjct: 181 --------------------------EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240

Query: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300
           HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Sbjct: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300

Query: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 332
           PRIINGCLRTFVKDIQETDSTHARVKEVVST
Sbjct: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 301

[Close]

BLAST of CmoCh02G008630 vs. NCBI nr
Match: KAG6605513.1 (hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035451.1 nusB [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 572.0 bits (1473), Expect = 3.3e-159
Identity = 299/331 (90.33%), Postives = 300/331 (90.63%), Query Frame = 0


Query: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60
           MVELVS+VVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNT 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI    
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI---- 180

Query: 181 VLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240
                                     EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS
Sbjct: 181 --------------------------EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240

Query: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300
           HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Sbjct: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300

Query: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 332
           PRIINGCLRTFVKDIQETDSTHARVKEVVST
Sbjct: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 301

[Close]

BLAST of CmoCh02G008630 vs. NCBI nr
Match: XP_023532267.1 (uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 564.3 bits (1453), Expect = 6.9e-157
Identity = 296/331 (89.43%), Postives = 298/331 (90.03%), Query Frame = 0


Query: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60
           MVELVS+VVLPTRLDNVIATRPNFHFSS VSGICRFPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICRFPFPTSAIVPYVKESVPRLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNT 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI    
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI---- 180

Query: 181 VLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240
                                     EAE+LAAPPKVVYSKLILRFTRKLLVAVVDRWDS
Sbjct: 181 --------------------------EAEVLAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240

Query: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300
           HVLKIDKVIPSTWKDKPAGRILEL ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Sbjct: 241 HVLKIDKVIPSTWKDKPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300

Query: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 332
           PRIINGCLRTFVKDIQETDSTHARVKEVVST
Sbjct: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 301

[Close]

BLAST of CmoCh02G008630 vs. NCBI nr
Match: XP_023007062.1 (uncharacterized protein LOC111499665 [Cucurbita maxima])

HSP 1 Score: 564.3 bits (1453), Expect = 6.9e-157
Identity = 297/331 (89.73%), Postives = 298/331 (90.03%), Query Frame = 0


Query: 1   MVELVSIVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASL 60
           MVELVS+VVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASL
Sbjct: 1   MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASL 60

Query: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120
           RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV
Sbjct: 61  RASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPV 120

Query: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNT 180
           RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI    
Sbjct: 121 RLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAI---- 180

Query: 181 VLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240
                                     EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS
Sbjct: 181 --------------------------EAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDS 240

Query: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300
           HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA
Sbjct: 241 HVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAA 300

Query: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 332
           PRIINGCLRTFVKDIQETDSTHARVKEVVST
Sbjct: 301 PRIINGCLRTFVKDIQETDSTHARVKEVVST 301

[Close]

BLAST of CmoCh02G008630 vs. NCBI nr
Match: XP_038901769.1 (uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida])

HSP 1 Score: 468.4 bits (1204), Expect = 5.2e-128
Identity = 240/315 (76.19%), Postives = 260/315 (82.54%), Query Frame = 0


Query: 15  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPHLCPQASLRASTSFSKNSVGKE 74
           D VI TRPNFHFS  +SGICRFPF  S+IVP+VK+S+ HLCPQASLRASTSF +N V ++
Sbjct: 109 DKVITTRPNFHFSLHISGICRFPFRASSIVPHVKDSMTHLCPQASLRASTSFPENCVAED 168

Query: 75  SSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPG 134
            SS+ VSS+E IPK+DKSG+FCSPRAARELALSI+YA+CLEGSDPVRLFEKRLN R E G
Sbjct: 169 RSSISVSSVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNTRRELG 228

Query: 135 YEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIVVNTVLSNLKSPISLLLV 194
           YEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDEKDS I                  
Sbjct: 229 YEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSII------------------ 288

Query: 195 IAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWK 254
                       EAEILAAPPK+VYSKLILRFTRKLLVAVVD WDS VLKI+KVIP TWK
Sbjct: 289 ------------EAEILAAPPKMVYSKLILRFTRKLLVAVVDGWDSRVLKIEKVIPPTWK 348

Query: 255 DKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 314
           DKPA RILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD
Sbjct: 349 DKPARRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD 393

Query: 315 IQETDSTHARVKEVV 330
           I+E DS+HAR K+ V
Sbjct: 409 IKEIDSSHAREKQEV 393

[Close]

BLAST of CmoCh02G008630 vs. TAIR 10
Match: AT4G26370.1 (antitermination NusB domain-containing protein )

HSP 1 Score: 313.9 bits (803), Expect = 1.5e-85
Identity = 166/274 (60.58%), Postives = 197/274 (71.90%), Query Frame = 0


Query: 58  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGS 117
           +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGS
Sbjct: 57  SSLRLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGS 116

Query: 118 DPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIV 177
           DP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S I 
Sbjct: 117 DPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKI- 176

Query: 178 VNTVLSNLKSPISLLLVIAKFCFLLDCISEAEILAAPPKVVYSKLILRFTRKLLVAVVDR 237
                                        EAE+L+APPK+VYSKL+LRF +KLL AVVD+
Sbjct: 177 -----------------------------EAEVLSAPPKLVYSKLVLRFAKKLLAAVVDK 236

Query: 238 WDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCD 297
           WDSHV+ I+K+ P  WK  PAGRILE  ILHLAMSE+ V+ TRH IVINEAVDLAKRFCD
Sbjct: 237 WDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDLAKRFCD 296

Query: 298 GAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS 331
           G+APRIINGCLRTFVKD   T +  A  +K+ VS
Sbjct: 297 GSAPRIINGCLRTFVKDRATTSTPQALELKQEVS 300

[Close]

BLAST of CmoCh02G008630 vs. TAIR 10
Match: AT4G26370.2 (antitermination NusB domain-containing protein )

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-37
Identity = 85/143 (59.44%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 58  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGS 117
           +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGS
Sbjct: 57  SSLRLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGS 116

Query: 118 DPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIV 177
           DP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  ET EE DEL+R DEK+S I 
Sbjct: 117 DPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIG 176

Query: 178 VNTVLSNLKSPISLLLVIAKFCF 201
            + +L      IS L     FCF
Sbjct: 177 RSLILK-----ISFL-----FCF 189

The following BLAST results are available for this feature:

BLAST of CmoCh02G008630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18B61	4.0e-06	39.19	Transcription antitermination protein NusB OS=Clostridioides difficile (strain 6...	[more]
A7GWZ7	2.0e-05	35.37	Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.9...	[more]
Q8GIR7	2.6e-05	42.65	Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PC...	[more]
Q5N1J7	2.6e-05	42.65	Transcription antitermination protein NusB OS=Synechococcus sp. (strain ATCC 271...	[more]
B1WXY6	5.7e-05	38.67	Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain AT...	[more]

BLAST of CmoCh02G008630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8E0	8.5e-161	90.94	uncharacterized protein LOC111451776 OS=Cucurbita moschata OX=3662 GN=LOC1114517...	[more]
A0A6J1KXJ4	3.3e-157	89.73	uncharacterized protein LOC111499665 OS=Cucurbita maxima OX=3661 GN=LOC111499665...	[more]
A0A5D3DDJ4	6.2e-127	75.87	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G0011...	[more]
A0A1S3BNR2	6.2e-127	75.87	uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KWZ5	7.5e-125	75.00	NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 S...	[more]

BLAST of CmoCh02G008630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948088.1	1.8e-160	90.94	uncharacterized protein LOC111451776 [Cucurbita moschata]	[more]
KAG6605513.1	3.3e-159	90.33	hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023532267.1	6.9e-157	89.43	uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]	[more]
XP_023007062.1	6.9e-157	89.73	uncharacterized protein LOC111499665 [Cucurbita maxima]	[more]
XP_038901769.1	5.2e-128	76.19	uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]	[more]

BLAST of CmoCh02G008630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26370.1	1.5e-85	60.58	antitermination NusB domain-containing protein	[more]
AT4G26370.2	1.5e-37	59.44	antitermination NusB domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035926	NusB-like superfamily	GENE3D	1.10.940.10		coord: 96..319 e-value: 1.9E-17 score: 65.5
IPR035926	NusB-like superfamily	SUPERFAMILY	48013	NusB-like	coord: 223..317
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 228..313 e-value: 1.6E-11 score: 44.5
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 206..323 coord: 64..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G008630.1	CmoCh02G008630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003723	RNA binding