Cmc12g0321801.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc12g0321801.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr12: 8817584 .. 8818216 (+)
Sequence length	633
RNA-Seq Expression	Cmc12g0321801.1
Synteny	Cmc12g0321801.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGGTTTGACGAATGCTCCGGCAGTGTTTTTGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAATGAGGTTTGTAGCTTTCTGGGTTTAGCCGGTTATTATCGACGGTTTGTGAAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGATTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTATAGTGATGCTTCTAAGAAGGGTTTTGGTTGTGTATCGATGCAGCAAGGTAAGTTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTAA

mRNA sequence

ATGTCCTTTGGTTTGACGAATGCTCCGGCAGTGTTTTTGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAATGAGGTTTGTAGCTTTCTGGGTTTAGCCGGTTATTATCGACGGTTTGTGAAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGATTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTATAGTGATGCTTCTAAGAAGGGTTTTGGTTGTGTATCGATGCAGCAAGGTAAGTTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTAA

Coding sequence (CDS)

ATGTCCTTTGGTTTGACGAATGCTCCGGCAGTGTTTTTGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGCTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAATGAGGTTTGTAGCTTTCTGGGTTTAGCCGGTTATTATCGACGGTTTGTGAAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGATTCTTACTGTACCTGATGGTTCAGGCAGTTTTGTGATTTATAGTGATGCTTCTAAGAAGGGTTTTGGTTGTGTATCGATGCAGCAAGGTAAGTTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTAA

Protein sequence

MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSDASKKGFGCVSMQQGKLVAYASRQLKSHEQN

Homology

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BLAST of Cmc12g0321801.1 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 404.1 bits (1037), Expect = 7.6e-109
Identity = 201/210 (95.71%), Postives = 206/210 (98.10%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 132

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPSTV+EV SFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 252

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           AS+KG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 253 ASRKGLGCVLMQQGKVVAYASRQLKSHEQN 282

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BLAST of Cmc12g0321801.1 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 403.3 bits (1035), Expect = 1.3e-108
Identity = 200/210 (95.24%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTV+EV SFLGLAGYYR
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 874 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 903

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BLAST of Cmc12g0321801.1 vs. NCBI nr
Match: KAA0026271.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108
Identity = 199/210 (94.76%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 263 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 322

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTV+EV SFLGLAGYYR
Sbjct: 323 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 382

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 383 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 442

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 443 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 472

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BLAST of Cmc12g0321801.1 vs. NCBI nr
Match: KAA0040698.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108
Identity = 200/210 (95.24%), Postives = 204/210 (97.14%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 773 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 832

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVD AKIEAVT W RPSTVNEV SFLGLAGYYR
Sbjct: 833 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDRAKIEAVTGWTRPSTVNEVRSFLGLAGYYR 892

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 893 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 952

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 953 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 982

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BLAST of Cmc12g0321801.1 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108
Identity = 199/210 (94.76%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1    MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
            MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1177 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1236

Query: 61   LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
            LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTV+EV SFLGLAGYYR
Sbjct: 1237 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 1296

Query: 121  RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
            RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 1297 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 1356

Query: 181  ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
            ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 1357 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 1386

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BLAST of Cmc12g0321801.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-39
Identity = 82/211 (38.86%), Postives = 124/211 (58.77%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+P P+   E+ +FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPILTVPDGSGSFVIYS 180
           +F+ N++ IA P+T   +K       K    ++F+ LK  ++  PIL +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           DAS    G V  Q G  +++ SR L  HE N
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELN 543

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BLAST of Cmc12g0321801.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.3e-38
Identity = 84/211 (39.81%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +P P+   E+ +FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPILTVPDGSGSFVIYS 180
           +F+ NF+ IA P+T+  +K      +    DS F+ LK  +   PIL VPD +  F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           DAS    G V  Q G  ++Y SR L  HE N
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEIN 544

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BLAST of Cmc12g0321801.1 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.7e-34
Identity = 80/222 (36.04%), Postives = 124/222 (55.86%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           + FGL NA ++F   ++ V RE +     V++DD++I+S+ E++H  H+  VL+ L D  
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           +     K  F+ + V +LG +VSK G   DP K++A+  +P P  V +V SFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVKNFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAP-ILTV 180
            F+K+F+ IA P+T + +           K  P  +++   ++FQ L+  L +   IL  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PDGSGSFVIYSDASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           PD    F + +DAS  G G V  Q+G+ +   SR LK  EQN
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQN 530

[Close]

BLAST of Cmc12g0321801.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 77/225 (34.22%), Postives = 123/225 (54.67%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           + FGL NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           L     K  F   QV FLG++V+  G+  DP K+ A++  P P++V E+  FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVKNFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPILTVP 180
           +F+++++++A PLT LTR              P    +    SF +LK  L ++ IL  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DGSGSFVIYSDASKKGFGCVSMQ----QGKLVAYASRQLKSHEQN 211
             +  F + +DAS    G V  Q    + + +AY SR L   E+N
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEEN 474

[Close]

BLAST of Cmc12g0321801.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.5e-30
Identity = 67/193 (34.72%), Postives = 110/193 (56.99%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+  FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           +F+   S++  PL  L +K   + W+     + +N+KQ LV+ P+L   D S   ++ +D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASKKGFGCVSMQQ 194
           AS    G V  Q+
Sbjct: 714 ASDVAVGAVLSQK 726

[Close]

BLAST of Cmc12g0321801.1 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 3.7e-109
Identity = 201/210 (95.71%), Postives = 206/210 (98.10%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 132

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSW RPSTV+EV SFLGLAGYYR
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 252

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           AS+KG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 253 ASRKGLGCVLMQQGKVVAYASRQLKSHEQN 282

[Close]

BLAST of Cmc12g0321801.1 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.3e-109
Identity = 200/210 (95.24%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTV+EV SFLGLAGYYR
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 874 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 903

[Close]

BLAST of Cmc12g0321801.1 vs. ExPASy TrEMBL
Match: A0A5A7SPZ2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 199/210 (94.76%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 263 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 322

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTV+EV SFLGLAGYYR
Sbjct: 323 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 382

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 383 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 442

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 443 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 472

[Close]

BLAST of Cmc12g0321801.1 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 199/210 (94.76%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1    MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
            MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1177 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1236

Query: 61   LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
            LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTV+EV SFLGLAGYYR
Sbjct: 1237 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 1296

Query: 121  RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
            RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 1297 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 1356

Query: 181  ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
            ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 1357 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 1386

[Close]

BLAST of Cmc12g0321801.1 vs. ExPASy TrEMBL
Match: A0A5A7TCQ5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00130 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 200/210 (95.24%), Postives = 204/210 (97.14%), Query Frame = 0


Query: 1   MSFGLTNAPAVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVF+DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 773 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 832

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVNEVCSFLGLAGYYR 120
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVD AKIEAVT W RPSTVNEV SFLGLAGYYR
Sbjct: 833 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDRAKIEAVTGWTRPSTVNEVRSFLGLAGYYR 892

Query: 121 RFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 180
           RFV+NFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LTVPDGSGSFVIYSD
Sbjct: 893 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 952

Query: 181 ASKKGFGCVSMQQGKLVAYASRQLKSHEQN 211
           ASKKG GCV MQQGK+VAYASRQLKSHEQN
Sbjct: 953 ASKKGLGCVLMQQGKVVAYASRQLKSHEQN 982

[Close]

BLAST of Cmc12g0321801.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 7.0e-28
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 48  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPST 107
           HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VNEVCSFLGLAGYYRRFVKNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPI 167
             E+  FLGL GYYRRFVKN+ +I  PLT+L +K +   W++    +F+ LK  + T P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LTVPDGSGSFV 177
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc12g0321801.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042119.1	7.6e-109	95.71	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	1.3e-108	95.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0026271.1	3.8e-108	94.76	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040698.1	3.8e-108	95.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047433.1	3.8e-108	94.76	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0321801.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.7e-39	38.86	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	4.3e-38	39.81	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	3.7e-34	36.04	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	1.6e-32	34.22	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	9.5e-30	34.72	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc12g0321801.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLA3	3.7e-109	95.71	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
A0A5A7U330	6.3e-109	95.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7SPZ2	1.8e-108	94.76	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002730 PE...	[more]
A0A5A7TV57	1.8e-108	94.76	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TCQ5	1.8e-108	95.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]

BLAST of Cmc12g0321801.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.0e-28	45.04	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..210 e-value: 2.0E-17 score: 63.0
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 1.5E-16 score: 60.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.511086
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 9.5E-35 score: 121.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..183 e-value: 4.2E-32 score: 112.0
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..177
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..177
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 3.08829E-39 score: 131.178
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..210

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc12g0321801	Cmc12g0321801	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc12g0321801.1-exon	Cmc12g0321801.1-exon-CMiso1.1chr12:8817584..8818216	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc12g0321801.1-cds	Cmc12g0321801.1-cds-CMiso1.1chr12:8817584..8818216	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc12g0321801.1	Cmc12g0321801.1-protein	polypeptide