Cmc07g0198731 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0198731
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr07: 21826019 .. 21827062 (+)
RNA-Seq Expression	Cmc07g0198731
Synteny	Cmc07g0198731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTCTATTCAAAGATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTTCTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGCAAATACTAAAGAAGTTTGATTCTTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGATAGTGTGATGTATTTAATGAATCACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGATAATGATGAGGTTAACTCTACTAGTGGGTATGTATTTTTACTCGGAGATGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCACTAGAGTTGGCAGGACAGGAGGCTGAGTGGATAAAAAATCTACTAGGAGATGTACCATTATGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCTGCGATATGTACTGCCAAGAATAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAACCAAAGGACTAACAAGAAAAATGGTATTAGATTCCTCTGTGAACATGGGCCTGAAGCCCTTCGAAGATCTATAG

mRNA sequence

ATGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTCTATTCAAAGATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTTCTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGCAAATACTAAAGAAGTTTGATTCTTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGATAGTGTGATGTATTTAATGAATCACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGATAATGATGAGGTTAACTCTACTAGTGGGTATGTATTTTTACTCGGAGATGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCACTAGAGTTGGCAGGACAGGAGGCTGAGTGGATAAAAAATCTACTAGGAGATGTACCATTATGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCTGCGATATGTACTGCCAAGAATAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAACCAAAGGACTAACAAGAAAAATGGTATTAGATTCCTCTGTGAACATGGGCCTGAAGCCCTTCGAAGATCTATAG

Coding sequence (CDS)

ATGTTGATAACCAATGGATTTAAAATAAATTCCTCTGACACGTGTGTCTATTCAAAGATGGTTGGAGCTGATTGCATATTAATATGTCTATATGTTGACGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTTCTCCTCTCGTCACACTTTGAAATGAAAGACCTGGGAGAAGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACCAGTTTGTCTCTATGTCAATCTCATTACGTAGAGCAAATACTAAAGAAGTTTGATTCTTTTGATGTTTCTCCTGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTCAACCCGAATATGCAAAGATCATAGATAGTGTGATGTATTTAATGAATCACACTAGACCAGATATTGCATATGCTGTCAGTAGATTAAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTACGCCATCTGTTGAGATATCTTAAAGGGACGATAGATTACTGTCTACACTTCAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGATAATGATGAGGTTAACTCTACTAGTGGGTATGTATTTTTACTCGGAGATGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACAATGGAATCCGAGTTCATAGCACTAGAGTTGGCAGGACAGGAGGCTGAGTGGATAAAAAATCTACTAGGAGATGTACCATTATGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCTGCGATATGTACTGCCAAGAATAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTGCTAAAGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAACCAAAGGACTAACAAGAAAAATGGTATTAGATTCCTCTGTGAACATGGGCCTGAAGCCCTTCGAAGATCTATAG

Protein sequence

MLITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFEDL

Homology

[Close]

BLAST of Cmc07g0198731 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 683.3 bits (1762), Expect = 1.1e-192
Identity = 335/345 (97.10%), Postives = 339/345 (98.26%), Query Frame = 0


Query: 2    LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDL 61
            LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTK+ LSSHFEMKDL
Sbjct: 1001 LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDL 1060

Query: 62   GEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS 121
            GEADVILGVKIRKNKTSLSLCQSHYVE+ILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS
Sbjct: 1061 GEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS 1120

Query: 122  QPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLH 181
            QPEYAKII SVMYLMN+TRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLH
Sbjct: 1121 QPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLH 1180

Query: 182  FNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIAL 241
            F KFP VLEGYCDANWVTDNDEVNSTSGYVFLLG GAISWKSTKQTCIARSTMESEFIAL
Sbjct: 1181 FKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL 1240

Query: 242  ELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQ 301
            ELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQ
Sbjct: 1241 ELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQ 1300

Query: 302  LLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFED 347
            LLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPF D
Sbjct: 1301 LLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGD 1345

[Close]

BLAST of Cmc07g0198731 vs. NCBI nr
Match: KAA0044881.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 587.0 bits (1512), Expect = 1.0e-163
Identity = 295/339 (87.02%), Postives = 307/339 (90.56%), Query Frame = 0


Query: 9   INSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVIL 68
           +NS D+ ++   + ++         D L+     EL+     L   +  ++ LGEADVIL
Sbjct: 643 LNSVDSSMWKNAIKSEL--------DSLVMNHTWELVD----LPMGNKPIRYLGEADVIL 702

Query: 69  GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 128
           GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI
Sbjct: 703 GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 762

Query: 129 IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV 188
           IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV
Sbjct: 763 IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV 822

Query: 189 LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA 248
           LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA
Sbjct: 823 LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA 882

Query: 249 EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI 308
           EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI
Sbjct: 883 EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI 942

Query: 309 SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFEDL 348
           SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFEDL
Sbjct: 943 SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFEDL 969

[Close]

BLAST of Cmc07g0198731 vs. NCBI nr
Match: KAA0049695.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 585.5 bits (1508), Expect = 3.0e-163
Identity = 286/305 (93.77%), Postives = 295/305 (96.72%), Query Frame = 0


Query: 42  MELITDTKFLLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSP 101
           MEL+TDTKF LSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVE+ILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 102 VRTPFDASKHLKKNKGDSVSQPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYH 161
           VRTPFDASKHL KNKGDSVSQPEYAKII SVMYLMN+TRPDIAYAVSRLSRYTHNP+RYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 162 WDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISW 221
           WD LRHLLRYLKGTIDYCL+FNKFP VLEGYCDANWVTDNDEVNSTSGYVFLLG GAISW
Sbjct: 121 WDVLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISW 180

Query: 222 KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAK 281
           KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGT VPVSIQCDSQAAICTAK
Sbjct: 181 KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVPVSIQCDSQAAICTAK 240

Query: 282 NSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGL 341
           NSVYNGKSRHIRL+HAVVKQLLK+GTIS +FVRSEKNLADPLTKGLTRKMVLDSS+NMGL
Sbjct: 241 NSVYNGKSRHIRLKHAVVKQLLKKGTISFKFVRSEKNLADPLTKGLTRKMVLDSSMNMGL 300

Query: 342 KPFED 347
           KPF D
Sbjct: 301 KPFGD 305

[Close]

BLAST of Cmc07g0198731 vs. NCBI nr
Match: TYK07244.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 570.1 bits (1468), Expect = 1.3e-158
Identity = 286/338 (84.62%), Postives = 302/338 (89.35%), Query Frame = 0


Query: 9    INSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVIL 68
            +NS D+ ++ + + ++         D L+     EL+     L   +  ++ LGEADVIL
Sbjct: 735  LNSVDSSMWKEAIKSEL--------DSLVMNHTWELVD----LPMGNKPIRYLGEADVIL 794

Query: 69   GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 128
            GVKIRKNKTSLSLCQSHYVE+ILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI
Sbjct: 795  GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 854

Query: 129  IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV 188
            I SVMYLMN+TRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP V
Sbjct: 855  IGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAV 914

Query: 189  LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA 248
            LEGYCDANWVTDNDEVNSTSGYVFLLG GAISWKSTKQTCIARSTMESEFIALELAGQEA
Sbjct: 915  LEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA 974

Query: 249  EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI 308
            EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTI
Sbjct: 975  EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTI 1034

Query: 309  SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFED 347
            SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPF D
Sbjct: 1035 SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGD 1060

[Close]

BLAST of Cmc07g0198731 vs. NCBI nr
Match: KAA0036644.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 568.9 bits (1465), Expect = 2.9e-158
Identity = 279/289 (96.54%), Postives = 282/289 (97.58%), Query Frame = 0


Query: 58  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKG 117
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVE+ILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 118 DSVSQPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 177
           DSVSQPEYAKII SVMYLMN+TRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 178 YCLHFNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESE 237
           YCLHF KFP VLEGYCDANWVTDNDEVNSTSGYVFLLG  AISWKSTKQTCIARSTMESE
Sbjct: 121 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGEAISWKSTKQTCIARSTMESE 180

Query: 238 FIALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHA 297
           FIALELAGQEAEWIKNLLGDVPLWGTSVPV IQCDSQAAICTAKNSVYNGKSRH+RLRHA
Sbjct: 181 FIALELAGQEAEWIKNLLGDVPLWGTSVPVFIQCDSQAAICTAKNSVYNGKSRHVRLRHA 240

Query: 298 VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFED 347
           VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPF D
Sbjct: 241 VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGD 289

[Close]

BLAST of Cmc07g0198731 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 8.6e-60
Identity = 133/329 (40.43%), Postives = 197/329 (59.88%), Query Frame = 0


Query: 12   SDTCVYSKMVGA-DCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVILGV 71
            SD CVY K     + I++ LYVDDMLI G +  LI   K  LS  F+MKDLG A  ILG+
Sbjct: 988  SDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGM 1047

Query: 72   KIRKNKTS--LSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKK--------NKGDSV 131
            KI + +TS  L L Q  Y+E++L++F+  +  PV TP      L K         KG+  
Sbjct: 1048 KIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMA 1107

Query: 132  SQPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 191
              P Y+  + S+MY M  TRPDIA+AV  +SR+  NP + HW+A++ +LRYL+GT   CL
Sbjct: 1108 KVP-YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL 1167

Query: 192  HFNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIA 251
             F     +L+GY DA+   D D   S++GY+F    GAISW+S  Q C+A ST E+E+IA
Sbjct: 1168 CFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIA 1227

Query: 252  LELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVK 311
                G+E  W+K  L ++ L      V   CDSQ+AI  +KNS+Y+ +++HI +R+  ++
Sbjct: 1228 ATETGKEMIWLKRFLQELGLHQKEYVV--YCDSQSAIDLSKNSMYHARTKHIDVRYHWIR 1287

Query: 312  QLLKEGTISLEFVRSEKNLADPLTKGLTR 330
            +++ + ++ +  + + +N AD LTK + R
Sbjct: 1288 EMVDDESLKVLKISTNENPADMLTKVVPR 1313

[Close]

BLAST of Cmc07g0198731 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.3e-51
Identity = 119/342 (34.80%), Postives = 185/342 (54.09%), Query Frame = 0


Query: 2    LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDL 61
            L+T GF  + SDT ++    G   I + +YVDD+LI G +  L+  T   LS  F +K+ 
Sbjct: 1104 LLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEH 1163

Query: 62   GEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS 121
             +    LG++ ++    L L Q  Y   +L + +     PV TP   S  L  + G  + 
Sbjct: 1164 EDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLP 1223

Query: 122  QP-EYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 181
             P EY  I+ S+ YL   TRPD++YAV+RLS+Y H P   HW+AL+ +LRYL GT D+ +
Sbjct: 1224 DPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGI 1283

Query: 182  HFNKFPVV-LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFI 241
               K   + L  Y DA+W  D D+  ST+GY+  LG   ISW S KQ  + RS+ E+E+ 
Sbjct: 1284 FLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1343

Query: 242  ALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVV 301
            ++     E +WI +LL ++ +  +  PV I CD+  A     N V++ + +HI L +  +
Sbjct: 1344 SVANTSSELQWICSLLTELGIQLSHPPV-IYCDNVGATYLCANPVFHSRMKHIALDYHFI 1403

Query: 302  KQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGL 342
            +  ++ G + +  V +   LAD LTK L+R    + S  +G+
Sbjct: 1404 RNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc07g0198731 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.1e-50
Identity = 118/342 (34.50%), Postives = 186/342 (54.39%), Query Frame = 0


Query: 2    LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDL 61
            L+T GF  + SDT ++    G   + + +YVDD+LI G +  L+ +T   LS  F +KD 
Sbjct: 1121 LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDH 1180

Query: 62   GEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS 121
             E    LG++ ++  T L L Q  Y+  +L + +     PV TP   S  L    G  ++
Sbjct: 1181 EELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLT 1240

Query: 122  QP-EYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 181
             P EY  I+ S+ YL   TRPDI+YAV+RLS++ H P   H  AL+ +LRYL GT ++ +
Sbjct: 1241 DPTEYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGI 1300

Query: 182  HFNKFPVV-LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFI 241
               K   + L  Y DA+W  D D+  ST+GY+  LG   ISW S KQ  + RS+ E+E+ 
Sbjct: 1301 FLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1360

Query: 242  ALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVV 301
            ++     E +WI +LL ++ +  T  PV I CD+  A     N V++ + +HI + +  +
Sbjct: 1361 SVANTSSEMQWICSLLTELGIRLTRPPV-IYCDNVGATYLCANPVFHSRMKHIAIDYHFI 1420

Query: 302  KQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGL 342
            +  ++ G + +  V +   LAD LTK L+R    + +  +G+
Sbjct: 1421 RNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Cmc07g0198731 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 179.5 bits (454), Expect = 6.6e-44
Identity = 114/340 (33.53%), Postives = 181/340 (53.24%), Query Frame = 0


Query: 9    INSS-DTCVYSKMVG--ADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEAD 68
            +NSS D C+Y    G   + I + LYVDD++I   +M  + + K  L   F M DL E  
Sbjct: 1062 VNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIK 1121

Query: 69   VILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEY 128
              +G++I   +  + L QS YV++IL KF+  + + V TP  +  + +    D       
Sbjct: 1122 HFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC 1181

Query: 129  AKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK- 188
              +I  +MY+M  TRPD+  AV+ LSRY+   N   W  L+ +LRYLKGTID  L F K 
Sbjct: 1182 RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKN 1241

Query: 189  --FPVVLEGYCDANWVTDNDEVNSTSGYVFLLGD-GAISWKSTKQTCIARSTMESEFIAL 248
              F   + GY D++W     +  ST+GY+F + D   I W + +Q  +A S+ E+E++AL
Sbjct: 1242 LAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMAL 1301

Query: 249  ELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQ 308
              A +EA W+K LL  + +     P+ I  D+Q  I  A N   + +++HI +++   ++
Sbjct: 1302 FEAVREALWLKFLLTSINI-KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE 1361

Query: 309  LLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGL 342
             ++   I LE++ +E  LAD  TK L     ++    +GL
Sbjct: 1362 QVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc07g0198731 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-33
Identity = 78/224 (34.82%), Postives = 124/224 (55.36%), Query Frame = 0


Query: 28  ICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYV 87
           + LYVDD+L+ G++  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 88  EQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIDSVMYLMNHTRPDIAYAV 147
           EQIL      D  P+ TP     +   +        ++  I+ ++ YL   TRPDI+YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAV 122

Query: 148 SRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK-FPVVLEGYCDANWVTDNDEVNS 207
           + + +  H P    +D L+ +LRY+KGTI + L+ +K   + ++ +CD++W        S
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 182

Query: 208 TSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEAEW 251
           T+G+   LG   ISW + +Q  ++RS+ E+E+ AL L   E  W
Sbjct: 183 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc07g0198731 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 683.3 bits (1762), Expect = 5.2e-193
Identity = 335/345 (97.10%), Postives = 339/345 (98.26%), Query Frame = 0


Query: 2    LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDL 61
            LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTK+ LSSHFEMKDL
Sbjct: 1001 LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDL 1060

Query: 62   GEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS 121
            GEADVILGVKIRKNKTSLSLCQSHYVE+ILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS
Sbjct: 1061 GEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVS 1120

Query: 122  QPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLH 181
            QPEYAKII SVMYLMN+TRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLH
Sbjct: 1121 QPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLH 1180

Query: 182  FNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIAL 241
            F KFP VLEGYCDANWVTDNDEVNSTSGYVFLLG GAISWKSTKQTCIARSTMESEFIAL
Sbjct: 1181 FKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL 1240

Query: 242  ELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQ 301
            ELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQ
Sbjct: 1241 ELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQ 1300

Query: 302  LLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFED 347
            LLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPF D
Sbjct: 1301 LLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGD 1345

[Close]

BLAST of Cmc07g0198731 vs. ExPASy TrEMBL
Match: A0A5A7TTN4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001740 PE=4 SV=1)

HSP 1 Score: 587.0 bits (1512), Expect = 5.1e-164
Identity = 295/339 (87.02%), Postives = 307/339 (90.56%), Query Frame = 0


Query: 9   INSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVIL 68
           +NS D+ ++   + ++         D L+     EL+     L   +  ++ LGEADVIL
Sbjct: 643 LNSVDSSMWKNAIKSEL--------DSLVMNHTWELVD----LPMGNKPIRYLGEADVIL 702

Query: 69  GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 128
           GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI
Sbjct: 703 GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 762

Query: 129 IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV 188
           IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV
Sbjct: 763 IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV 822

Query: 189 LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA 248
           LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA
Sbjct: 823 LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA 882

Query: 249 EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI 308
           EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI
Sbjct: 883 EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI 942

Query: 309 SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFEDL 348
           SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFEDL
Sbjct: 943 SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFEDL 969

[Close]

BLAST of Cmc07g0198731 vs. ExPASy TrEMBL
Match: A0A5A7U7W6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001180 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 1.5e-163
Identity = 286/305 (93.77%), Postives = 295/305 (96.72%), Query Frame = 0


Query: 42  MELITDTKFLLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSP 101
           MEL+TDTKF LSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVE+ILKKFD FDVSP
Sbjct: 1   MELMTDTKFFLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDFFDVSP 60

Query: 102 VRTPFDASKHLKKNKGDSVSQPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYH 161
           VRTPFDASKHL KNKGDSVSQPEYAKII SVMYLMN+TRPDIAYAVSRLSRYTHNP+RYH
Sbjct: 61  VRTPFDASKHLMKNKGDSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYH 120

Query: 162 WDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISW 221
           WD LRHLLRYLKGTIDYCL+FNKFP VLEGYCDANWVTDNDEVNSTSGYVFLLG GAISW
Sbjct: 121 WDVLRHLLRYLKGTIDYCLYFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISW 180

Query: 222 KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAK 281
           KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGT VPVSIQCDSQAAICTAK
Sbjct: 181 KSTKQTCIARSTMESEFIALELAGQEAEWIKNLLGDVPLWGTYVPVSIQCDSQAAICTAK 240

Query: 282 NSVYNGKSRHIRLRHAVVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGL 341
           NSVYNGKSRHIRL+HAVVKQLLK+GTIS +FVRSEKNLADPLTKGLTRKMVLDSS+NMGL
Sbjct: 241 NSVYNGKSRHIRLKHAVVKQLLKKGTISFKFVRSEKNLADPLTKGLTRKMVLDSSMNMGL 300

Query: 342 KPFED 347
           KPF D
Sbjct: 301 KPFGD 305

[Close]

BLAST of Cmc07g0198731 vs. ExPASy TrEMBL
Match: A0A5D3C7N0 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001400 PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 6.4e-159
Identity = 286/338 (84.62%), Postives = 302/338 (89.35%), Query Frame = 0


Query: 9    INSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVIL 68
            +NS D+ ++ + + ++         D L+     EL+     L   +  ++ LGEADVIL
Sbjct: 735  LNSVDSSMWKEAIKSEL--------DSLVMNHTWELVD----LPMGNKPIRYLGEADVIL 794

Query: 69   GVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 128
            GVKIRKNKTSLSLCQSHYVE+ILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI
Sbjct: 795  GVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKI 854

Query: 129  IDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV 188
            I SVMYLMN+TRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP V
Sbjct: 855  IGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAV 914

Query: 189  LEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEA 248
            LEGYCDANWVTDNDEVNSTSGYVFLLG GAISWKSTKQTCIARSTMESEFIALELAGQEA
Sbjct: 915  LEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA 974

Query: 249  EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKEGTI 308
            EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQLLKEGTI
Sbjct: 975  EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKEGTI 1034

Query: 309  SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFED 347
            SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPF D
Sbjct: 1035 SLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGD 1060

[Close]

BLAST of Cmc07g0198731 vs. ExPASy TrEMBL
Match: A0A5A7SZD1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00130 PE=4 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 1.4e-158
Identity = 279/289 (96.54%), Postives = 282/289 (97.58%), Query Frame = 0


Query: 58  MKDLGEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNKG 117
           MKDLGEADVILGVKIRKNKTSLSLCQSHYVE+ILKKFDSFDVSPVRTPFDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 118 DSVSQPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 177
           DSVSQPEYAKII SVMYLMN+TRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 178 YCLHFNKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESE 237
           YCLHF KFP VLEGYCDANWVTDNDEVNSTSGYVFLLG  AISWKSTKQTCIARSTMESE
Sbjct: 121 YCLHFKKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGEAISWKSTKQTCIARSTMESE 180

Query: 238 FIALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHA 297
           FIALELAGQEAEWIKNLLGDVPLWGTSVPV IQCDSQAAICTAKNSVYNGKSRH+RLRHA
Sbjct: 181 FIALELAGQEAEWIKNLLGDVPLWGTSVPVFIQCDSQAAICTAKNSVYNGKSRHVRLRHA 240

Query: 298 VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFED 347
           VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPF D
Sbjct: 241 VVKQLLKEGTISLEFVRSEKNLADPLTKGLTRKMVLDSSVNMGLKPFGD 289

[Close]

BLAST of Cmc07g0198731 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 163.7 bits (413), Expect = 2.7e-40
Identity = 99/314 (31.53%), Postives = 169/314 (53.82%), Query Frame = 0


Query: 2   LITNGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDL 61
           LI  GF  + SD   + K+     + + +YVDD++I   N   + + K  L S F+++DL
Sbjct: 254 LIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDL 313

Query: 62  GEADVILGVKIRKNKTSLSLCQSHYVEQILKKFDSFDVSPVRTPFDASKHLKKNK-GDSV 121
           G     LG++I ++   +++CQ  Y   +L +       P   P D S     +  GD V
Sbjct: 314 GPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFV 373

Query: 122 SQPEYAKIIDSVMYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCL 181
               Y ++I  +MYL   TR DI++AV++LS+++  P   H  A+  +L Y+KGT+   L
Sbjct: 374 DAKAYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 433

Query: 182 HF-NKFPVVLEGYCDANWVTDNDEVNSTSGYVFLLGDGAISWKSTKQTCIARSTMESEFI 241
            + ++  + L+ + DA++ +  D   ST+GY   LG   ISWKS KQ  +++S+ E+E+ 
Sbjct: 434 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 493

Query: 242 ALELAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLR-HAV 301
           AL  A  E  W+     ++ L   S P  + CD+ AAI  A N+V++ +++HI    H+V
Sbjct: 494 ALSFATDEMMWLAQFFRELQL-PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 553

Query: 302 VKQLLKEGTISLEF 313
            ++ + + T+S  F
Sbjct: 554 RERSVYQATLSYSF 565

[Close]

BLAST of Cmc07g0198731 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 4.8e-34
Identity = 78/224 (34.82%), Postives = 124/224 (55.36%), Query Frame = 0


Query: 28  ICLYVDDMLIFGTNMELITDTKFLLSSHFEMKDLGEADVILGVKIRKNKTSLSLCQSHYV 87
           + LYVDD+L+ G++  L+    F LSS F MKDLG     LG++I+ + + L L Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 88  EQILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPEYAKIIDSVMYLMNHTRPDIAYAV 147
           EQIL      D  P+ TP     +   +        ++  I+ ++ YL   TRPDI+YAV
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAV 122

Query: 148 SRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK-FPVVLEGYCDANWVTDNDEVNS 207
           + + +  H P    +D L+ +LRY+KGTI + L+ +K   + ++ +CD++W        S
Sbjct: 123 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 182

Query: 208 TSGYVFLLGDGAISWKSTKQTCIARSTMESEFIALELAGQEAEW 251
           T+G+   LG   ISW + +Q  ++RS+ E+E+ AL L   E  W
Sbjct: 183 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc07g0198731 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.6e-05
Identity = 26/83 (31.33%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 133 MYLMNHTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFN-KFPVVLEG 192
           MYL   TRPD+ +AV+RLS+++         A+  +L Y+KGT+   L ++    + L+ 
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 193 YCDANWVTDNDEVNSTSGYVFLL 215
           + D++W +  D   S +G+  L+
Sbjct: 61  FADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc07g0198731 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	1.1e-192	97.10	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044881.1	1.0e-163	87.02	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049695.1	3.0e-163	93.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK07244.1	1.3e-158	84.62	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036644.1	2.9e-158	96.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc07g0198731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.6e-60	40.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	7.3e-51	34.80	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.1e-50	34.50	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	6.6e-44	33.53	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	6.8e-33	34.82	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc07g0198731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	5.2e-193	97.10	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TTN4	5.1e-164	87.02	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U7W6	1.5e-163	93.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C7N0	6.4e-159	84.62	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SZD1	1.4e-158	96.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc07g0198731 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.7e-40	31.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.8e-34	34.82	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.6e-05	31.33	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..106 e-value: 2.1E-21 score: 76.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..218
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 190..330 e-value: 4.65039E-61 score: 190.372
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 26..294

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0198731.1	Cmc07g0198731.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding