Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTTTGGTTATCCTGTAGTTATGGTAGCCTTTAGTTCAATTCTAGTTGTTTATTTCTTAGTAGTTTTGAATAATTTTGTTGTTGATTTGGGATGGCTATCCTACAGTTATGGTAGCCTTTTTTGTTTTGAATTTGTCTGTATTTTTTAGGGTTTGAAGGGGTGGTAGTAGGATAGCTTGCAAGGTAGCATTATTGGAAGGGGCATGATGCGAAAATTAAAGTTCTTTATAGTTAATTAGGTTGTGTAGCTATCCTACAGTTATGGTAGCCTTTGTAGTTTAAAGTTAATTTTAGTGGAAATTTTGGGAGATTTGTATATTTAGGGGAGTAAGTTTAGGACGTGAGAGGAAAGGAATATGTTTCTAATCTAACCTATTTGAAGGACTTAAACGATGGACAAAGTTTGGATGAAACTTAGGAATAAGTTTTTCTTTGAGTATAAAGAGGGAGTGGCCCAATTTCTAGAAGTTTCCAAGTTTCACGTTGATGCCTATGGACGAATAAGTGTCCATGCAAAAGATGTATGAACTCAAATTAGAACTCACTAGAGGGTGTGAAATGACATTTATTGACTATTGGAATATCCCCTACTACACATAATGGGTGTATCATGCAGAGTCAGTTAGCTTTAGAGATACAGAAAACTTTAATGAAGGAACTAGTAGTAACCCTTTTAATGAAGGAACTAGTAGTAGGTAGTTTGATGAAGAAGATGATATGTTTGGTATGCTGAATGATTTACAAGCCCCGATTGAATAGGAAGAGGAAATGGAGGAAGGTCATTTAGAGGATGAAATGTCGAGAAATATTGGGGTAGATATAGATGAAGATACAACAAAGATATTTCAAGACTTATTGGATGAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCCTCCTTGAATTTTTTGGTTAAGTTAA
mRNA sequence
TTGTTTTGGTTATCCTGTAGTTATGGGACTTAAACGATGGACAAAGTTTGGATGAAACTTAGGAATAAGTTTTTCTTTGAGTATAAAGAGGGAGTGGCCCAATTTCTAGAAGTTTCCAAGTTTCACGTTGATGCCTATGGACGAATAAGTGTCCATGCAAAAGATGTATGAACTCAAATTAGAACTCACTAGAGGGTGTGAAATGACATTTATTGACTATTGGAATATCCCCTACTACACATAATGGGTGTATCATGCAGAGTCAGTTAGCTTTAGAGATACAGAAAACTTTAATGAAGGAACTAGTAGTAACCCTTTTAATGAAGGAACTAGTAGTAGGTAGTTTGATGAAGAAGATGATATGTTTGGTATGCTGAATGATTTACAAGCCCCGATTGAATAGGAAGAGGAAATGGAGGAAGGTCATTTAGAGGATGAAATGTCGAGAAATATTGGGGTAGATATAGATGAAGATACAACAAAGATATTTCAAGACTTATTGGATGAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCCTCCTTGAATTTTTTGGTTAAGTTAA
Coding sequence (CDS)
ATGGAGGAAGGTCATTTAGAGGATGAAATGTCGAGAAATATTGGGGTAGATATAGATGAAGATACAACAAAGATATTTCAAGACTTATTGGATGAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCCTCCTTGAATTTTTTGGTTAAGTTA
Protein sequence
MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL
Homology
BLAST of MELO3C031259 vs. NCBI nr
Match:
TYK01074.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL
Sbjct: 64 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 116
BLAST of MELO3C031259 vs. NCBI nr
Match:
KAA0047781.1 (hypothetical protein E6C27_scaffold133G00170 [Cucumis melo var. makuwa])
HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL
Sbjct: 64 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 116
BLAST of MELO3C031259 vs. NCBI nr
Match:
TYK16767.1 (transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo var. makuwa])
HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
+EEG LEDEMSRNIGVD+DEDTT IFQDLL+E RN+LYPGCSEF SLNFLVKL
Sbjct: 47 IEEGRLEDEMSRNIGVDLDEDTTNIFQDLLNETRNKLYPGCSEFFSLNFLVKL 99
BLAST of MELO3C031259 vs. NCBI nr
Match:
TYK27858.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
+EE HLEDEMS N+GVDIDED T IFQ+LL+EARNELYPGCSEFSSLNFLVKL
Sbjct: 18 LEERHLEDEMSMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSSLNFLVKL 70
BLAST of MELO3C031259 vs. NCBI nr
Match:
KAA0066710.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 92.8 bits (229), Expect = 9.4e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
+EE HLEDEM N+GVDIDED T IFQ+LL+EARNELYPGCSEFSSLNFLVKL
Sbjct: 18 LEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSSLNFLVKL 70
BLAST of MELO3C031259 vs. ExPASy TrEMBL
Match:
A0A5D3BPE4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00900 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL
Sbjct: 64 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 116
BLAST of MELO3C031259 vs. ExPASy TrEMBL
Match:
A0A5A7U2K8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00170 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL
Sbjct: 64 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 116
BLAST of MELO3C031259 vs. ExPASy TrEMBL
Match:
A0A5D3CY95 (Transposon protein, putative, CACTA, En/Spm sub-class, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00220 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
+EEG LEDEMSRNIGVD+DEDTT IFQDLL+E RN+LYPGCSEF SLNFLVKL
Sbjct: 47 IEEGRLEDEMSRNIGVDLDEDTTNIFQDLLNETRNKLYPGCSEFFSLNFLVKL 99
BLAST of MELO3C031259 vs. ExPASy TrEMBL
Match:
A0A5D3DWP4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00360 PE=4 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
+EE HLEDEMS N+GVDIDED T IFQ+LL+EARNELYPGCSEFSSLNFLVKL
Sbjct: 18 LEERHLEDEMSMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSSLNFLVKL 70
BLAST of MELO3C031259 vs. ExPASy TrEMBL
Match:
A0A5A7VHN9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00440 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0
Query: 1 MEEGHLEDEMSRNIGVDIDEDTTKIFQDLLDEARNELYPGCSEFSSLNFLVKL 54
+EE HLEDEM N+GVDIDED T IFQ+LL+EARNELYPGCSEFSSLNFLVKL
Sbjct: 18 LEERHLEDEMPMNVGVDIDEDRTNIFQNLLNEARNELYPGCSEFSSLNFLVKL 70
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| TYK01074.1 | 7.5e-21 | 100.00 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0047781.1 | 7.5e-21 | 100.00 | hypothetical protein E6C27_scaffold133G00170 [Cucumis melo var. makuwa] | [more] |
| TYK16767.1 | 1.9e-16 | 84.91 | transposon protein, putative, CACTA, En/Spm sub-class, expressed [Cucumis melo v... | [more] |
| TYK27858.1 | 2.5e-16 | 84.91 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
| KAA0066710.1 | 9.4e-16 | 83.02 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BPE4 | 3.6e-21 | 100.00 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5A7U2K8 | 3.6e-21 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3CY95 | 9.2e-17 | 84.91 | Transposon protein, putative, CACTA, En/Spm sub-class, expressed OS=Cucumis melo... | [more] |
| A0A5D3DWP4 | 1.2e-16 | 84.91 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A5A7VHN9 | 4.6e-16 | 83.02 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
