Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCTTTCCTTTCTCCCAAATTCCAAACTCCATAAAGCTCCCATCCTGACAAACATCTGTGTCGCAAACTTAGACTACGAGCATCTAAACCTGAATGTCCCTATCGCTAACTTATCAAAAAGAGAAGCAGAACAAAAGAAGGCAGCAGAGAATGCAGTGCTATTTAACCCTGACCTTCCATTAATCGTTTATGACCCACTTTTCCAAGACATACCTATGAGCAAAGATGCAGGCGAGATAAGTTCGGTGGAAGGAGCACAATCAGAAGATGAAGCCCTTGCGGAGAATGAAGGTGAGTTTCACGAATTACTCCACAATGTAATCGCAGAGCCCATGAACACAGTTTTTAAAGAAGTGCTTTTGGATAACGTATCAATGAAGGAACAGATCGCAAGTCTCAACACTAAAGTTTAA
mRNA sequence
ATGAAGATCCTTTCCTTTCTCCCAAATTCCAAACTCCATAAAGCTCCCATCCTGACAAACATCTGTGTCGCAAACTTAGACTACGAGCATCTAAACCTGAATGTCCCTATCGCTAACTTATCAAAAAGAGAAGCAGAACAAAAGAAGGCAGCAGAGAATGCAGTGCTATTTAACCCTGACCTTCCATTAATCGTTTATGACCCACTTTTCCAAGACATACCTATGAGCAAAGATGCAGGCGAGATAAGTTCGGTGGAAGGAGCACAATCAGAAGATGAAGCCCTTGCGGAGAATGAAGGTGAGTTTCACGAATTACTCCACAATGTAATCGCAGAGCCCATGAACACAGTTTTTAAAGAAGTGCTTTTGGATAACGTATCAATGAAGGAACAGATCGCAAGTCTCAACACTAAAGTTTAA
Coding sequence (CDS)
ATGAAGATCCTTTCCTTTCTCCCAAATTCCAAACTCCATAAAGCTCCCATCCTGACAAACATCTGTGTCGCAAACTTAGACTACGAGCATCTAAACCTGAATGTCCCTATCGCTAACTTATCAAAAAGAGAAGCAGAACAAAAGAAGGCAGCAGAGAATGCAGTGCTATTTAACCCTGACCTTCCATTAATCGTTTATGACCCACTTTTCCAAGACATACCTATGAGCAAAGATGCAGGCGAGATAAGTTCGGTGGAAGGAGCACAATCAGAAGATGAAGCCCTTGCGGAGAATGAAGGTGAGTTTCACGAATTACTCCACAATGTAATCGCAGAGCCCATGAACACAGTTTTTAAAGAAGTGCTTTTGGATAACGTATCAATGAAGGAACAGATCGCAAGTCTCAACACTAAAGTTTAA
Protein sequence
MKILSFLPNSKLHKAPILTNICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPDLPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKEVLLDNVSMKEQIASLNTKV
Homology
BLAST of MELO3C022627 vs. NCBI nr
Match:
TYK06139.1 (hypothetical protein E5676_scaffold572G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MKILSFLPNSKLHKAPILTNICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPD 60
MKILSFLPNSKLHKAPILTNICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPD
Sbjct: 1 MKILSFLPNSKLHKAPILTNICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPD 60
Query: 61 LPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKE 120
LPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKE
Sbjct: 61 LPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKE 120
Query: 121 VLLDNVSMKEQIASLNTKV 140
VLLDNVSMKEQIASLNTKV
Sbjct: 121 VLLDNVSMKEQIASLNTKV 139
BLAST of MELO3C022627 vs. NCBI nr
Match:
KAA0040567.1 (hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK05610.1 hypothetical protein E5676_scaffold98G00660 [Cucumis melo var. makuwa])
HSP 1 Score: 134.0 bits (336), Expect = 9.7e-28
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 0
Query: 20 NICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPDLPLIVYDPLFQDIPMSKDA 79
N+ + NLD EH++LNVP+ NLS+ EA +KAAE + +P+LPLIVYDP FQDIP+ +DA
Sbjct: 46 NLSIINLDLEHIDLNVPVVNLSEWEASIEKAAEEVEIVDPNLPLIVYDPFFQDIPIKEDA 105
Query: 80 GEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKEVLLDNVSMKEQIASLNTKV 139
G+ SS E AQS+DEA E E EF ++L+NVI E MN F EV L NV+ K+QI +LN +V
Sbjct: 106 GKTSSKEEAQSDDEAPTEKEVEFPDVLYNVIVEVMNAAFNEVFLKNVAKKDQITNLNIQV 165
BLAST of MELO3C022627 vs. NCBI nr
Match:
KAA0063168.1 (hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa])
HSP 1 Score: 109.4 bits (272), Expect = 2.6e-20
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 0
Query: 44 EAEQKKAAENAVLFNPDLPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFH 103
+ E KK ++A + DLPLIVYDPLFQDIP+ +DAGE+S V AQ D+AL + E EF
Sbjct: 190 KVEPKKVTKDATSVDSDLPLIVYDPLFQDIPIDEDAGEMSLVGEAQLGDKALVKKEDEFS 249
Query: 104 ELLHNVIAEPMNTVFKEVLLDNVSMKEQIASLNTKV 140
++L+ V EPMN FKEV+L+NV+MKEQIA+LNT+V
Sbjct: 250 KVLNKVTVEPMNAAFKEVILENVAMKEQIANLNTQV 285
BLAST of MELO3C022627 vs. NCBI nr
Match:
KAA0060804.1 (hypothetical protein E6C27_scaffold137G00260 [Cucumis melo var. makuwa])
HSP 1 Score: 105.1 bits (261), Expect = 4.8e-19
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0
Query: 52 ENAVLFNPDLPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIA 111
+N VLFN DL L+VYD L QDI + D G+ SSV GAQSE+EA +NE EF ELLH+VI
Sbjct: 97 KNTVLFNLDLRLVVYDQLLQDIHVDLDTGKTSSVRGAQSENEAPTKNECEFCELLHHVII 156
Query: 112 EPMNTVFKEVLLDNVSMKEQIASLNTKV 140
E M+ KEVLL+N++MKEQIASLNTKV
Sbjct: 157 ESMDAALKEVLLENLAMKEQIASLNTKV 184
BLAST of MELO3C022627 vs. NCBI nr
Match:
TYK11975.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])
HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 0
Query: 52 ENAVLFNPDLPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIA 111
+N +LFN DL L+VYD L QDI + D G+ SSV G QSE+EA +NE EF ELLHNVI
Sbjct: 354 KNTMLFNLDLRLVVYDQLLQDIHVDLDTGKTSSVRGEQSENEAPTKNECEFCELLHNVII 413
Query: 112 EPMNTVFKEVLLDNVSMKEQIASLNTKV 140
E M+ KEVLL+N++MKEQIASLNTK+
Sbjct: 414 ESMDAALKEVLLENLAMKEQIASLNTKL 441
BLAST of MELO3C022627 vs. ExPASy TrEMBL
Match:
A0A5D3C6Y4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00350 PE=4 SV=1)
HSP 1 Score: 270.0 bits (689), Expect = 5.5e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MKILSFLPNSKLHKAPILTNICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPD 60
MKILSFLPNSKLHKAPILTNICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPD
Sbjct: 1 MKILSFLPNSKLHKAPILTNICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPD 60
Query: 61 LPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKE 120
LPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKE
Sbjct: 61 LPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKE 120
Query: 121 VLLDNVSMKEQIASLNTKV 140
VLLDNVSMKEQIASLNTKV
Sbjct: 121 VLLDNVSMKEQIASLNTKV 139
BLAST of MELO3C022627 vs. ExPASy TrEMBL
Match:
A0A5D3C2N8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00660 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 4.7e-28
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 0
Query: 20 NICVANLDYEHLNLNVPIANLSKREAEQKKAAENAVLFNPDLPLIVYDPLFQDIPMSKDA 79
N+ + NLD EH++LNVP+ NLS+ EA +KAAE + +P+LPLIVYDP FQDIP+ +DA
Sbjct: 46 NLSIINLDLEHIDLNVPVVNLSEWEASIEKAAEEVEIVDPNLPLIVYDPFFQDIPIKEDA 105
Query: 80 GEISSVEGAQSEDEALAENEGEFHELLHNVIAEPMNTVFKEVLLDNVSMKEQIASLNTKV 139
G+ SS E AQS+DEA E E EF ++L+NVI E MN F EV L NV+ K+QI +LN +V
Sbjct: 106 GKTSSKEEAQSDDEAPTEKEVEFPDVLYNVIVEVMNAAFNEVFLKNVAKKDQITNLNIQV 165
BLAST of MELO3C022627 vs. ExPASy TrEMBL
Match:
A0A5A7V6C0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00540 PE=4 SV=1)
HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 0
Query: 44 EAEQKKAAENAVLFNPDLPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFH 103
+ E KK ++A + DLPLIVYDPLFQDIP+ +DAGE+S V AQ D+AL + E EF
Sbjct: 190 KVEPKKVTKDATSVDSDLPLIVYDPLFQDIPIDEDAGEMSLVGEAQLGDKALVKKEDEFS 249
Query: 104 ELLHNVIAEPMNTVFKEVLLDNVSMKEQIASLNTKV 140
++L+ V EPMN FKEV+L+NV+MKEQIA+LNT+V
Sbjct: 250 KVLNKVTVEPMNAAFKEVILENVAMKEQIANLNTQV 285
BLAST of MELO3C022627 vs. ExPASy TrEMBL
Match:
A0A5A7V0F9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00260 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0
Query: 52 ENAVLFNPDLPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIA 111
+N VLFN DL L+VYD L QDI + D G+ SSV GAQSE+EA +NE EF ELLH+VI
Sbjct: 97 KNTVLFNLDLRLVVYDQLLQDIHVDLDTGKTSSVRGAQSENEAPTKNECEFCELLHHVII 156
Query: 112 EPMNTVFKEVLLDNVSMKEQIASLNTKV 140
E M+ KEVLL+N++MKEQIASLNTKV
Sbjct: 157 ESMDAALKEVLLENLAMKEQIASLNTKV 184
BLAST of MELO3C022627 vs. ExPASy TrEMBL
Match:
A0A5D3CKB6 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001600 PE=4 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 0
Query: 52 ENAVLFNPDLPLIVYDPLFQDIPMSKDAGEISSVEGAQSEDEALAENEGEFHELLHNVIA 111
+N +LFN DL L+VYD L QDI + D G+ SSV G QSE+EA +NE EF ELLHNVI
Sbjct: 354 KNTMLFNLDLRLVVYDQLLQDIHVDLDTGKTSSVRGEQSENEAPTKNECEFCELLHNVII 413
Query: 112 EPMNTVFKEVLLDNVSMKEQIASLNTKV 140
E M+ KEVLL+N++MKEQIASLNTK+
Sbjct: 414 ESMDAALKEVLLENLAMKEQIASLNTKL 441
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK06139.1 | 1.1e-68 | 100.00 | hypothetical protein E5676_scaffold572G00350 [Cucumis melo var. makuwa] | [more] |
| KAA0040567.1 | 9.7e-28 | 56.67 | hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK056... | [more] |
| KAA0063168.1 | 2.6e-20 | 58.33 | hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa] | [more] |
| KAA0060804.1 | 4.8e-19 | 64.77 | hypothetical protein E6C27_scaffold137G00260 [Cucumis melo var. makuwa] | [more] |
| TYK11975.1 | 2.4e-18 | 62.50 | Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3C6Y4 | 5.5e-69 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3C2N8 | 4.7e-28 | 56.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7V6C0 | 1.2e-20 | 58.33 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7V0F9 | 2.3e-19 | 64.77 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3CKB6 | 1.2e-18 | 62.50 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
