Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTACAAGAGTATGATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAAATGTCGAGCAGTATGCGCATGGAAATCTGTGAGGAAGATAAAAGACAAAGGACAGTACGAAGGAGTTACTAGTGGGTACTAGACATATCAGGCAAACATAAGAAAGAATATAATAGTTACCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCATCGAACAACTAAATTAGTGGGTTGAGAAGAGTAAAGAATTAGAAGAGAAAAATCAACTGTTAGAACAAGAGAATGAGAAACTTCGTAAAAAGACAAGTCAATGGATAGATCATGCGACTTATTTGCAGAAAGAACTAAAAAAGACGAAAAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAAACGTTAGATAAGGAGATGATGCAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAGCAGTGGAGTTGTCGGATGAATATATTAAAGATTTAAAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATAAATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTCTGCGTCAAACTTTTGATGACCTACATCTGAAGATGACTGAGCGCTCTAAAGAGTATAAGATACTGAAAAATTATGTCGATTCCTTACACCATCAACTTATCGCATTTCAAAATTCAAGTGAGAGGATTGTGTAGGAATATGAGTCATTAAAGACGGATTACGTGTAAATGAAGGTTGATTATGGTCTGCAAATGAAATATTTTCAGGTGCTAGTGGAAAGTGTAGATCAGACGATTGAATTTCTTAGAATGGTGTCTAGAAGAGAAAATGGTTTTGCAGAATGAACAGCTGATTTGAGGGTTAATTTTTTTCTCAATGCAACCTCACGCAGATGATCTAAATAGATTCTTGAAGATGGTATGCAGAGCACTCGAGCATTTTGGTCGTTTTCATTAATTATTCATTTTGCTATTGA
mRNA sequence
TCTACAAGAGTATGATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAAATGTCGAGCAGTATGCGCATGGAAATCTGTGAGGAAGATAAAAGACAAAGGACAGTACGAAGGAGTTACTAGTGGGTACTAGACATATCAGGCAAACATAAGAAAGAATATAATAGTTACCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCATCGAACAACTAAATTAGTGGGTTGAGAAGAGTAAAGAATTAGAAGAGAAAAATCAACTGTTAGAACAAGAGAATGAGAAACTTCGTAAAAAGACAAGTCAATGGATAGATCATGCGACTTATTTGCAGAAAGAACTAAAAAAGACGAAAAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAAACGTTAGATAAGGAGATGATGCAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAGCAGTGGAGTTGTCGGATGAATATATTAAAGATTTAAAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATAAATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTCTGCGTCAAACTTTTGATGACCTACATCTGAAGATGACTGAGCGCTCTAAAGAGTATAAGATACTGAAAAATTATGTCGATTCCTTACACCATCAACTTATCGCATTTCAAAATTCAAGTGAGAGGATTGTGTAGGAATATGAGTCATTAAAGACGGATTACGTGTAAATGAAGGTTGATTATGGTCTGCAAATGAAATATTTTCAGGTGCTAGTGGAAAGTGTAGATCAGACGATTGAATTTCTTAGAATGGTGTCTAGAAGAGAAAATGGTTTTGCAGAATGAACAGCTGATTTGAGGGTTAATTTTTTTCTCAATGCAACCTCACGCAGATGATCTAAATAGATTCTTGAAGATGGTATGCAGAGCACTCGAGCATTTTGGTCGTTTTCATTAATTATTCATTTTGCTATTGA
Coding sequence (CDS)
ATGATGCAAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAGCAGTGGAGTTGTCGGATGAATATATTAAAGATTTAAAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATAAATCAATTGGAAAACGAGAAACAAAAATAATGGATTTGGAAGCACACAATCATTCTCTGCGTCAAACTTTTGATGACCTACATCTGAAGATGACTGAGCGCTCTAAAGAGTATAAGATACTGAAAAATTATGTCGATTCCTTACACCATCAACTTATCGCATTTCAAAATTCAAGTGAGAGGATTGTGTAG
Protein sequence
MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDLEAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERIV
Homology
BLAST of MELO3C027522 vs. NCBI nr
Match:
TYK18656.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTLQA V DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 177 MRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 236
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EA NHSLRQT D+LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 237 EAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 285
BLAST of MELO3C027522 vs. NCBI nr
Match:
TYK23632.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 168.3 bits (425), Expect = 3.7e-38
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANR LKNEKTTLQA V DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 129 MRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 188
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EA NHSL QT D LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 189 EAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 237
BLAST of MELO3C027522 vs. NCBI nr
Match:
TYK23955.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTL+A V DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 260 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 319
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EAHNHSLRQ D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 320 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 368
BLAST of MELO3C027522 vs. NCBI nr
Match:
XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])
HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTL+A V DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 186 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 245
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EAHNHSLRQ D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 246 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 294
BLAST of MELO3C027522 vs. NCBI nr
Match:
KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTLQA V DEYIKDL++GKEYFLELVNDLN SI KRET+IMDL
Sbjct: 136 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVKRETQIMDL 195
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EA NHSLRQT D+LHLKM ERS+EY+ILKNY DSLH QL A QNSS+RI
Sbjct: 196 EAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSLHFQLTAHQNSSKRI 244
BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match:
A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTLQA V DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 177 MRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 236
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EA NHSLRQT D+LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 237 EAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 285
BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match:
A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)
HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANR LKNEKTTLQA V DEYIKDL++GKEYFLELVNDLN SIGKRET+IMDL
Sbjct: 129 MRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDL 188
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EA NHSL QT D LHLKM ERS+EY+ILKNYVDSLH+QL A QNSS+RI
Sbjct: 189 EAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRI 237
BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match:
A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTL+A V DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 260 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 319
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EAHNHSLRQ D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 320 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 368
BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match:
A0A1S4DX26 (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTL+A V DEYIKDL+SGKEYFLE VNDL+ SIG RET+IMDL
Sbjct: 186 MRRMNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDL 245
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EAHNHSLRQ D LHLKM ERS+EY+ILKNY DSLH+QLIAFQNSS+RI
Sbjct: 246 EAHNHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRI 294
BLAST of MELO3C027522 vs. ExPASy TrEMBL
Match:
A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 6.7e-38
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0
Query: 1 MMQMNKANRSLKNEKTTLQAAVELSDEYIKDLKSGKEYFLELVNDLNKSIGKRETKIMDL 60
M +MNKANRSLKNEKTTLQA V DEYIKDL++GKEYFLELVNDLN SI KRET+IMDL
Sbjct: 136 MRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVKRETQIMDL 195
Query: 61 EAHNHSLRQTFDDLHLKMTERSKEYKILKNYVDSLHHQLIAFQNSSERI 110
EA NHSLRQT D+LHLKM ERS+EY+ILKNY DSLH QL A QNSS+RI
Sbjct: 196 EAQNHSLRQTIDNLHLKMAERSEEYEILKNYADSLHFQLTAHQNSSKRI 244
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D533 | 9.4e-40 | 81.65 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE... | [more] |
A0A5D3DJ95 | 1.8e-38 | 79.82 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... | [more] |
A0A5D3DK34 | 2.3e-38 | 79.82 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE... | [more] |
A0A1S4DX26 | 2.3e-38 | 79.82 | girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1 | [more] |
A0A5D3DUG2 | 6.7e-38 | 79.82 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P... | [more] |
Match Name | E-value | Identity | Description | |