Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAATTACGATCTCGCTCCGTAGCCACGGCGGCGGTGATTCTGATGACCGCCGTCTGGCTTATGAGGTTTCCGGCGATGGCTTGCCCGGCGAACGGCAAGGTGTGCGGCGACTGCATCAGGGACAGGATGGAGCTAGATTGCCCAGCCTGTGCGCCGGCTCTGCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGATCCGGGGTCGAGGTGCGTTAAGCGGTGCGATTGCGGCGGCGCGTGGCCGAGGCTGTCGGCGTGCAGGCAATGCATGTCGAGATGCAAGTGCAGTTGCACCCCTTCTTCAAGCATAAGTTAA
mRNA sequence
ATGGAAAAATTACGATCTCGCTCCGTAGCCACGGCGGCGGTGATTCTGATGACCGCCGTCTGGCTTATGAGGTTTCCGGCGATGGCTTGCCCGGCGAACGGCAAGGTGTGCGGCGACTGCATCAGGGACAGGATGGAGCTAGATTGCCCAGCCTGTGCGCCGGCTCTGCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGATCCGGGGTCGAGGTGCGTTAAGCGGTGCGATTGCGGCGGCGCGTGGCCGAGGCTGTCGGCGTGCAGGCAATGCATGTCGAGATGCAAGTGCAGTTGCACCCCTTCTTCAAGCATAAGTTAA
Coding sequence (CDS)
ATGGAAAAATTACGATCTCGCTCCGTAGCCACGGCGGCGGTGATTCTGATGACCGCCGTCTGGCTTATGAGGTTTCCGGCGATGGCTTGCCCGGCGAACGGCAAGGTGTGCGGCGACTGCATCAGGGACAGGATGGAGCTAGATTGCCCAGCCTGTGCGCCGGCTCTGCGCTGCATGGCGCAGTGCCTGTGGGGCGGCGATCCGGGGTCGAGGTGCGTTAAGCGGTGCGATTGCGGCGGCGCGTGGCCGAGGCTGTCGGCGTGCAGGCAATGCATGTCGAGATGCAAGTGCAGTTGCACCCCTTCTTCAAGCATAAGTTAA
Protein sequence
MEKLRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMAQCLWGGDPGSRCVKRCDCGGAWPRLSACRQCMSRCKCSCTPSSSIS
Homology
BLAST of Sgr020856 vs. NCBI nr
Match:
KAG6573550.1 (hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 138.7 bits (348), Expect = 3.0e-29
Identity = 69/101 (68.32%), Postives = 76/101 (75.25%), Query Frame = 0
Query: 4 LRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMAQCL 63
LR S TAAVILMTA+ L CPA+ K+CGDCIRDRM L CPACAP LRCMAQCL
Sbjct: 5 LRFYSAITAAVILMTAICL----TSPCPADAKLCGDCIRDRMALHCPACAPPLRCMAQCL 64
Query: 64 WGGDPGSRCVKRCDCGGAWPRLSACRQCMSRCKCSCTPSSS 105
WGG SRCVK+CD GGAW RL +C++CM CKCSCT SSS
Sbjct: 65 WGGGSRSRCVKQCDSGGAWARLWSCKRCMWSCKCSCTSSSS 101
BLAST of Sgr020856 vs. NCBI nr
Match:
KAG7012656.1 (hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 134.0 bits (336), Expect = 7.4e-28
Identity = 65/94 (69.15%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 11 TAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMAQCLWGGDPGS 70
TAAVILMTA+ L CP + K+CGDCIRDRM L CPACAP LRCMAQCLWGG S
Sbjct: 55 TAAVILMTAICL----TSPCPTDAKLCGDCIRDRMALHCPACAPPLRCMAQCLWGGGSRS 114
Query: 71 RCVKRCDCGGAWPRLSACRQCMSRCKCSCTPSSS 105
RCVK+CD GGAW RL +C++CM CKCSCT SSS
Sbjct: 115 RCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS 144
BLAST of Sgr020856 vs. NCBI nr
Match:
KAG6573554.1 (hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 131.7 bits (330), Expect = 3.7e-27
Identity = 66/101 (65.35%), Postives = 73/101 (72.28%), Query Frame = 0
Query: 4 LRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMAQCL 63
LR S TA VILMT + L C A+ K+CGDCIRDRM L CPACAP LRCMAQCL
Sbjct: 5 LRFHSAITATVILMTGICL----TSPCLADAKLCGDCIRDRMALHCPACAPPLRCMAQCL 64
Query: 64 WGGDPGSRCVKRCDCGGAWPRLSACRQCMSRCKCSCTPSSS 105
WGG SRCVK+CD GGAW RL +C++CM CKCSCT SSS
Sbjct: 65 WGGGSRSRCVKQCDGGGAWARLWSCKRCMWSCKCSCTSSSS 101
BLAST of Sgr020856 vs. NCBI nr
Match:
XP_010646205.1 (PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera])
HSP 1 Score: 127.9 bits (320), Expect = 5.3e-26
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 0
Query: 1 MEKLRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMA 60
MEK + S A ++L+ WLM PA+ CP++G C DCI ++M CP+CAP LRCMA
Sbjct: 1 MEKNKQLSTMAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLRCMA 60
Query: 61 QCLWGGDPGSRCVKRCDCGGAWPRLSACRQCMSRCKCSC 100
+CLWGG S+CVKRCDC G PRLS C++CMSRCKCSC
Sbjct: 61 RCLWGGTSKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 99
BLAST of Sgr020856 vs. NCBI nr
Match:
RVW58233.1 (hypothetical protein CK203_111219 [Vitis vinifera])
HSP 1 Score: 127.9 bits (320), Expect = 5.3e-26
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 0
Query: 1 MEKLRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMA 60
MEK + S A ++L+ WLM PA+ CP++G C DCI ++M CP+CAP LRCMA
Sbjct: 4 MEKNKQLSTMAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLRCMA 63
Query: 61 QCLWGGDPGSRCVKRCDCGGAWPRLSACRQCMSRCKCSC 100
+CLWGG S+CVKRCDC G PRLS C++CMSRCKCSC
Sbjct: 64 RCLWGGTSKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 102
BLAST of Sgr020856 vs. ExPASy TrEMBL
Match:
A0A0A0LW71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G186620 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 2.9e-30
Identity = 65/96 (67.71%), Postives = 75/96 (78.12%), Query Frame = 0
Query: 11 TAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMAQCLWGGDPGS 70
T VILMTAVWL + CPA GKVC DCIR+RME DCPACAP LRCMAQCLWGGD S
Sbjct: 9 TEVVILMTAVWL----TVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRS 68
Query: 71 RCVKRCDCGGAWPRLSACRQCMSRCKCSCTPSSSIS 107
RCV RCD GGAW L++C+QC+++CKC C+ SS +S
Sbjct: 69 RCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMS 100
BLAST of Sgr020856 vs. ExPASy TrEMBL
Match:
A0A438FE46 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111219 PE=4 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 0
Query: 1 MEKLRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMA 60
MEK + S A ++L+ WLM PA+ CP++G C DCI ++M CP+CAP LRCMA
Sbjct: 4 MEKNKQLSTMAAVLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLRCMA 63
Query: 61 QCLWGGDPGSRCVKRCDCGGAWPRLSACRQCMSRCKCSC 100
+CLWGG S+CVKRCDC G PRLS C++CMSRCKCSC
Sbjct: 64 RCLWGGTSKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 102
BLAST of Sgr020856 vs. ExPASy TrEMBL
Match:
A0A438JGC2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014623 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0
Query: 1 MEKLRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMA 60
MEK + S A ++L WL PA++CP++G C DCI ++M CP+CAP L CMA
Sbjct: 4 MEKNKQLSTMAAVLMLQLVFWLTISPALSCPSDGSECKDCIVNQMRNVCPSCAPVLSCMA 63
Query: 61 QCLWGGDPGSRCVKRCDCGGAWPRLSACRQCMSRCKCSC 100
+CLWGG S+CVKRCDC G PRLS C++CMSRCKCSC
Sbjct: 64 RCLWGGASKSKCVKRCDCYGGKPRLSDCKKCMSRCKCSC 102
BLAST of Sgr020856 vs. ExPASy TrEMBL
Match:
A0A6P5T7R0 (uncharacterized protein LOC110764529 OS=Prunus avium OX=42229 GN=LOC110764529 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query: 1 MEKLRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMA 60
MEK S A V+L+ +WL FPA+ACP++G C DC+ ++M+ CP C P LRCMA
Sbjct: 1 MEKRASTQAAVPLVMLLLLLWLFVFPALACPSDGIQCKDCVANQMKFGCPECTPVLRCMA 60
Query: 61 QCLWGGDPGSRCVKRCDCG-GAWPRLSACRQCMSRCKCSC 100
+CLWGG + CVKRC+CG G P+LS C++CM RCKCSC
Sbjct: 61 RCLWGGSSRANCVKRCNCGSGGKPKLSDCKKCMLRCKCSC 100
BLAST of Sgr020856 vs. ExPASy TrEMBL
Match:
A0A5E4FT66 (PREDICTED: MIMGU_mgv11b015169mg OS=Prunus dulcis OX=3755 GN=ALMOND_2B025281 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 3.1e-24
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query: 1 MEKLRSRSVATAAVILMTAVWLMRFPAMACPANGKVCGDCIRDRMELDCPACAPALRCMA 60
MEK S A ++L+ +WL FPA+ACP++G CGDC+ ++M+ CP C P LRCMA
Sbjct: 1 MEKRASTQAAVPLMMLLLLLWLFVFPALACPSDGSQCGDCVANQMKFGCPECTPVLRCMA 60
Query: 61 QCLWGGDPGSRCVKRCDCG-GAWPRLSACRQCMSRCKCSC 100
+CLW G + CVKRC+CG G P LS C++CM RCKCSC
Sbjct: 61 RCLWRGSSRANCVKRCNCGSGGKPNLSDCKKCMLRCKCSC 100
BLAST of Sgr020856 vs. TAIR 10
Match:
AT1G12064.1 (unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 79.3 bits (194), Expect = 2.0e-15
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 0
Query: 31 PANGKVCGDCIRDRMELDCPACAPALRCMAQCLWGGDPGSRCVKRCDCG-GAWPRLSACR 90
P + C C+ ++M+ DCP C P LRCMA+CLWGG +C C C A P L C+
Sbjct: 38 PPSQNSCKTCMAEQMKYDCPKCVPVLRCMARCLWGGVTQRKCTTTCRCDTAAKPSLLECK 97
Query: 91 QCMSRCKCSC 100
+C+SRCKCSC
Sbjct: 98 RCVSRCKCSC 107
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6573550.1 | 3.0e-29 | 68.32 | hypothetical protein SDJN03_27437, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7012656.1 | 7.4e-28 | 69.15 | hypothetical protein SDJN02_25409, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6573554.1 | 3.7e-27 | 65.35 | hypothetical protein SDJN03_27441, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_010646205.1 | 5.3e-26 | 57.58 | PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera] | [more] |
| RVW58233.1 | 5.3e-26 | 57.58 | hypothetical protein CK203_111219 [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LW71 | 2.9e-30 | 67.71 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G186620 PE=4 SV=1 | [more] |
| A0A438FE46 | 2.6e-26 | 57.58 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_111219 PE=4 SV=1 | [more] |
| A0A438JGC2 | 1.8e-24 | 55.56 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014623 PE=4 SV=1 | [more] |
| A0A6P5T7R0 | 1.8e-24 | 54.00 | uncharacterized protein LOC110764529 OS=Prunus avium OX=42229 GN=LOC110764529 PE... | [more] |
| A0A5E4FT66 | 3.1e-24 | 53.00 | PREDICTED: MIMGU_mgv11b015169mg OS=Prunus dulcis OX=3755 GN=ALMOND_2B025281 PE=4... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G12064.1 | 2.0e-15 | 48.57 | unknown protein; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 ... | [more] |
