Spg037928 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037928
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	outer envelope membrane protein 7-like
Location	scaffold12: 43292258 .. 43293257 (-)
RNA-Seq Expression	Spg037928
Synteny	Spg037928

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGAAACCATCGGGGACCAAGCAAGCATTTGTCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGAGCCCGCTCCGCCATGGACAACTCCGATCCGGCTCGGGATCCCGACGACCTTGTCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAGTACCACCGCTTAAATTGCAATTTCTAGGTATGAGTATGACAGGGAGGTCTGATGGAATAGTTTGTCGCCATCATGTTGTGCCTGTAAAAAGTGGAATTTTAGATCTTTTCGCTCCGTATCGTATAAGGTCAGTAGTAGACCATTTTAATTGAATTAAAGTGATTCAGCTTTTACTTTTATAAACCTGGCCTCCCGGCGCTTTCTGAATGTGCTTGATTTGCTAATCAATTCCACAACTTCCTCCTGTAAATCTAACTACAAGCTTGGAACTAAGGAGTGTTCTCATTACCTATTCGATTAATGGTTTAAAAAAATTAAGGTGTTTAACTTGACTAAAGCCTAGTTTTTTACATGATCATGTTATAGTTTTGTCAAACATTATTCAGTGGCCTAGCTGCATACCCACGCCCAGCTGTCATTTAGTGATACAAGTCTTCTGAATAGCGGAAGGAAACACCTAGAGGGTGAAGTGTACAAAACCTTCATTTTTACATGATGCTTTGTGTGTAAAAAGAGACTGAAAAGTCTGATGTAATTGGGTTTGTTAAACTACAATCCCTTGGCCTATTTAAGTTTTGAAAACCACCTCCATCATTTTATTTGTCTTCTCGTTTCCTTTAATTTCTTTGTGAAGGAGGGTGATTCATCCGTTGGGAGAAAAAGGATGGACTGGAGAGAGAGCAATGCAAATAGTAGTGGCAGAATTGTTTAATAACAGAATCAAAGCGAGAGTCTCCGAAGCTTTCTGTCTTCGCATACCCATTAGGGTATTGCGTCCAGAAAAAAAGAAAAAGAAATAA

mRNA sequence

ATGGGAAAGAAACCATCGGGGACCAAGCAAGCATTTGTCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGAGCCCGCTCCGCCATGGACAACTCCGATCCGGCTCGGGATCCCGACGACCTTGTCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAATCTTTTCGCTCCGTATCGTATAAGGAGGGTGATTCATCCGTTGGGAGAAAAAGGATGGACTGGAGAGAGAGCAATGCAAATAGTAGTGGCAGAATTGTTTAATAACAGAATCAAAGCGAGAGTCTCCGAAGCTTTCTGTCTTCGCATACCCATTAGGGTATTGCGTCCAGAAAAAAAGAAAAAGAAATAA

Coding sequence (CDS)

ATGGGAAAGAAACCATCGGGGACCAAGCAAGCATTTGTCGTCTTTGGAGCCTTAGCGCTGGGTTGGCTCGCCATTGAGATGGCTTTCAAGCCCTTCCTCGATAGAGCCCGCTCCGCCATGGACAACTCCGATCCGGCTCGGGATCCCGACGACCTTGTCGATAACCAATCTGATCAGAGGCCATCTGATGACGATCAAAATCTTTTCGCTCCGTATCGTATAAGGAGGGTGATTCATCCGTTGGGAGAAAAAGGATGGACTGGAGAGAGAGCAATGCAAATAGTAGTGGCAGAATTGTTTAATAACAGAATCAAAGCGAGAGTCTCCGAAGCTTTCTGTCTTCGCATACCCATTAGGGTATTGCGTCCAGAAAAAAAGAAAAAGAAATAA

Protein sequence

MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQRPSDDDQNLFAPYRIRRVIHPLGEKGWTGERAMQIVVAELFNNRIKARVSEAFCLRIPIRVLRPEKKKKK

Homology

[Close]

BLAST of Spg037928 vs. NCBI nr
Match: XP_038888886.1 (outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888888.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888889.1 outer envelope membrane protein 7-like [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSGTKQAF VFGALALGWLAIEMAFKPFLD+ARSAMDNSDPA+DPDDLVDNQSDQ 
Sbjct: 1  MGKKPSGTKQAFFVFGALALGWLAIEMAFKPFLDKARSAMDNSDPAQDPDDLVDNQSDQS 60

Query: 61 PSDDDQNLFA 71
          PSDDDQ+  A
Sbjct: 61 PSDDDQSTTA 70

[Close]

BLAST of Spg037928 vs. NCBI nr
Match: XP_022155586.1 (outer envelope membrane protein 7-like [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-24
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSGTKQAFV+FGALALGWLAIEMAFKPFLD+ARSAMD SDP RDPDDLVDN SD R
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 PSDDDQNLFA 71
          PSDDD++  A
Sbjct: 61 PSDDDESTTA 70

[Close]

BLAST of Spg037928 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-22
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
           MGKK S TKQA +VFGALALGWLAIEMAFKP LDR RSAMDN+DPARD DDL DNQSDQR
Sbjct: 173 MGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQR 232

Query: 61  PSDDDQN 68
           PSDDDQ+
Sbjct: 233 PSDDDQS 239

[Close]

BLAST of Spg037928 vs. NCBI nr
Match: KAG7036368.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-22
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
           MGKK S TKQA +VFGALALGWLAIEMAFKP LDR RSAMDN+DPARD DDL DNQSDQR
Sbjct: 203 MGKKQSDTKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDDLADNQSDQR 262

Query: 61  PSDDDQN 68
           PSDDDQ+
Sbjct: 263 PSDDDQS 269

[Close]

BLAST of Spg037928 vs. NCBI nr
Match: XP_023553591.1 (outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-21
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLD+ARSAMDNSDP RDPDDL+D QSD  
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 PSDDDQNLFA 71
           SDDD++  A
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of Spg037928 vs. ExPASy Swiss-Prot
Match: Q9SVC4 (Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 4  KPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDD 52
          K SG KQA VV  A+ALGWLAIE+AFKPFLD+ RS++D SDP +DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

[Close]

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A6J1DS29 (outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC111022685 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSGTKQAFV+FGALALGWLAIEMAFKPFLD+ARSAMD SDP RDPDDLVDN SD R
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 PSDDDQNLFA 71
          PSDDD++  A
Sbjct: 61 PSDDDESTTA 70

[Close]

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A6J1HGS4 (outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111463949 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLD+ARSAMDNSDP RDPDD +D QSD  
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60

Query: 61 PSDDDQNLFA 71
           SDDD++  A
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A6J1HUQ5 (outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111467002 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.8e-21
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          MGKKPSG+KQAF + GALALGWLAIE+AFKPFLD+ARSAMDNSDP RDPDDL+D QSD  
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEIAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 PSDDDQN 68
           SDDD++
Sbjct: 61 QSDDDRS 67

[Close]

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A5A7URM9 (6.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00570 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.8e-21
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          M K+PSGT QAF VF ALA+GWLAIEMAFKPFLD+ARSAMD SDPARDPD+LVDNQSD  
Sbjct: 1  MSKRPSGTTQAFFVFSALAMGWLAIEMAFKPFLDKARSAMDKSDPARDPDELVDNQSDHT 60

Query: 61 PSDDDQN 68
           SDDDQ+
Sbjct: 61 SSDDDQS 67

[Close]

BLAST of Spg037928 vs. ExPASy TrEMBL
Match: A0A0A0KJE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDDLVDNQSDQR 60
          M  K S TKQAF VFGALA+GWLAIEMAFKP L +ARSAMD SDPARDPD+L+D+ S   
Sbjct: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELLDHTS--- 60

Query: 61 PSDDDQN 68
           SDDD+N
Sbjct: 61 -SDDDRN 63

[Close]

BLAST of Spg037928 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 4  KPSGTKQAFVVFGALALGWLAIEMAFKPFLDRARSAMDNSDPARDPDD 52
          K SG KQA VV  A+ALGWLAIE+AFKPFLD+ RS++D SDP +DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

[Close]

BLAST of Spg037928 vs. TAIR 10
Match: AT3G63160.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 (TAIR:AT3G52420.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.0e-06
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 3  KKPSGTKQ-AFVVFGALALGWLAIEMAFKPFLDRARSAMDNSD 45
          +KP+G KQ A VV G LA+GWLAIE+ FKP   +  S+ D SD
Sbjct: 15 EKPTGKKQTATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSD 57

[Close]

BLAST of Spg037928 vs. TAIR 10
Match: AT2G34585.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 9.6e-04
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 11 AFVVFGALALGWLAIEMAFKPFLDRARSAMDNS-DPARDPDDL-VDNQSDQR 61
          A +    + LGW+ IE+A KP L+  R A+D S +P  DPDD  VD+ SD R
Sbjct: 7  AVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVR 58

The following BLAST results are available for this feature:

BLAST of Spg037928 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888886.1	1.1e-25	90.00	outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer...	[more]
XP_022155586.1	3.5e-24	85.71	outer envelope membrane protein 7-like [Momordica charantia]	[more]
KAG6606428.1	9.6e-22	85.07	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7036368.1	9.6e-22	85.07	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_023553591.1	2.8e-21	78.57	outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg037928 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVC4	5.5e-12	70.83	Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 S...	[more]

BLAST of Spg037928 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DS29	1.7e-24	85.71	outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HGS4	6.7e-21	77.14	outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HUQ5	8.8e-21	79.10	outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC1114670...	[more]
A0A5A7URM9	8.8e-21	80.60	6.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KJE9	7.2e-15	71.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1	[more]

BLAST of Spg037928 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52420.1	3.9e-13	70.83	outer envelope membrane protein 7	[more]
AT3G63160.1	6.0e-06	55.81	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT2G34585.1	9.6e-04	46.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61
None	No IPR available	PANTHER	PTHR33982:SF5	OUTER ENVELOPE MEMBRANE PROTEIN 7	coord: 4..62
IPR038944	Outer envelope membrane protein 7-like	PANTHER	PTHR33982	OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATED	coord: 4..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037928.1	Spg037928.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031359	integral component of chloroplast outer membrane