Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATTGTTGAATTTAAGTTGTTGGGATTTCCTAATTTAAAAGAAGAAAGGGAGTGAAGAAAAGAATGGAAATAAGGAAGAAAAGAAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGGAATAAGGAAAAAAAAAAAAGAAAGAAAATGGGAAAACCACTTTCGGTGCTTAGAAACCCACCACCGACTAGCATTCTTATCAGCCCATTTTCAGCCCAATTTCTCATCATTTTCCATCCAAAGATTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAATAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAAATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGCCTTTTTATTCGGTTTGAGCTACACAGAAGGAATTAAGAGGTGAGGTTTAATTTTCATGAAAGTTAATCCATTTTCTAACCAATTTCATGAAGGAAGCTTGAGCTAAATCTGATGAGAAGTTTATGGTTTTTGAGATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAAGAGGATCTCTAGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAGGTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTATTCAGGTACGTTGTAGAGTGTTCGCAAATGAAGAGTTTGATGTATAGTACATTAATATTGGTTAAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAACTAGAATGTGGATGTGATTCTTAATTCAATTGTTTAGAAATTCATGAGCATGGAAAGACAAAACTAATTATGGTTCTGATGCTCGGTTTTGGTTGGTTGACAGGCCAAGAGGAAATAGGTCGGGTCTATAAACCAGGGAACTAGCTAAGACGGTGAGTGACAAAATAAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATAAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTATTGAGATTTATAAATGAGCACGTGATTATTGAGTTTGAGAAAAATAGTTGAAACAACATCCTTTTAAGTCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTCCACGAGCAAGCTGAATAAGCTTGAGTTTTACGAGAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGTCTTGCTAGATTTTTAATGACGAGCCTGCGATGTTTTTAAGAAAGCTTTTATCGTTGCACGTTTATGTTTAACGCCTTGGTCGAGTATCTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTGTAAGGATTGGACAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCATTTGTATATGTTTTTTGTTGTGAAATCTATATCAGGTTATTTTCCAAATCGAGTTATGTCAGGGCTGCACCTCGTGTATATTAGAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTTCATGTGGAATGTTTTATATCTAAGATTAGTATGTTTATCAGGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATATTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAATGACTGTTATTTTTGGGCGCCCTTTTTTCCTTCTTGGACTTTCCCTCTCTTTAATGAGGGTAGGTGTAATGTGGTTGGTCTTTAATTAATCTAATTTCTTTTCAAAAAAAAAAAGAACGGAAAAGTGAAAATATTGGCAAAAGACACTAGTGTCCATAGATATTCTTGAAATTAATCCTTAAATGTTTTTTAAAAAGTTATAAAGTTTGTTGTATTTTGCCAATCTAAACTGTTGATCATGGTCGGAGTTAAAACATGTGCATGTTGTGAGTGATTTTGCGGAAGAGATTGACGATCTTAGGCACCGATTTTCATTAATTTCTCAAGAACAAGCATGCTGAAATTTTCAAATAAAAACAGAGGATTGAAAAACTTAACTTTGAAGCTTCAATCCGTGAGTTCCTTTGGTTGTTTCTTCACACGATCTTCACGTCGACTACCGCTAGAGCCTTCCCCGCTATTCTCCGGCCTTAGAACGGGCTTGTGGGAACCCGAGCATGATGAATTTGATGAAGAACACATGGGTTTTGTGCCTTGGGAGCTATGGTGTTTGAGAGAGTTTTCTTTTCAGTTTTGCATGAGATTTCTCCAGCAACTTCAACTAAATTCCATACCCCTT
mRNA sequence
ATGACTGCAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATTGTTGAATTTAACAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTATTCAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATATTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGAGCCTTCCCCGCTATTCTCCGGCCTTAGAACGGGCTTGTGGGAACCCGAGCATGATGAATTTGATGAAGAACACATGGGTTTTGTGCCTTGGGAGCTATGGTGTTTGAGAGAGTTTTCTTTTCAGTTTTGCATGAGATTTCTCCAGCAACTTCAACTAAATTCCATACCCCTT
Coding sequence (CDS)
ATGACTGCAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATTGTTGAATTTAACAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTATTCAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATATTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGAGCCTTCCCCGCTATTCTCCGGCCTTAGAACGGGCTTGTGGGAACCCGAGCATGATGAATTTGATGAAGAACACATGGGTTTTGTGCCTTGGGAGCTATGGTGTTTGAGAGAGTTTTCTTTTCAGTTTTGCATGAGATTTCTCCAGCAACTTCAACTAAATTCCATACCCCTT
Protein sequence
MTANPRLSLDHLLLSSIVVSLLNLTENLESVLSVFGAFLDKLVENLVFIYSDNDKQACSNVFMGFSEISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGEPSPLFSGLRTGLWEPEHDEFDEEHMGFVPWELWCLREFSFQFCMRFLQQLQLNSIPL
Homology
BLAST of Spg035470 vs. NCBI nr
Match:
TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 88.6 bits (218), Expect = 6.8e-14
Identity = 55/103 (53.40%), Postives = 61/103 (59.22%), Query Frame = 0
Query: 73 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS--- 132
MTEILSPRLYGTVCTQ VEIELPVPDTLPTSAESS S+SS+
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 133 TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGEPSP 149
+ E V + EDD+ WLHA+FR K AGG GG P
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMP 103
BLAST of Spg035470 vs. NCBI nr
Match:
KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 88.6 bits (218), Expect = 6.8e-14
Identity = 55/103 (53.40%), Postives = 61/103 (59.22%), Query Frame = 0
Query: 73 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS--- 132
MTEILSPRLYGTVCTQ VEIELPVPDTLPTSAESS S+SS+
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 133 TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGEPSP 149
+ E V + EDD+ WLHA+FR K AGG GG P
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMP 103
BLAST of Spg035470 vs. NCBI nr
Match:
TYK00848.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 87.0 bits (214), Expect = 2.0e-13
Identity = 54/98 (55.10%), Postives = 60/98 (61.22%), Query Frame = 0
Query: 65 FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSR 124
F+E+SI YMTEILS RLYG VCTQ VEIEL VPDTLPTSAES R
Sbjct: 6 FAELSIAYMTEILSLRLYGIVCTQVIFSLSTLSVLHDNDAVVEIELLVPDTLPTSAESFR 65
Query: 125 SSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGE 146
S+S S + DD+ WLHAIFR K AGG GG+
Sbjct: 66 SNSRSA------GIVRGDDVCWLHAIFRAKTAGGPGGD 97
BLAST of Spg035470 vs. NCBI nr
Match:
TYK11693.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 0
Query: 65 FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSR 124
F+E+SIDY+TEILS RLYGTVCTQ VEIELPVPDTLPTSAESS+
Sbjct: 6 FAELSIDYVTEILSLRLYGTVCTQVIFLLSTLSVLHDNDAVVEIELPVPDTLPTSAESSK 65
Query: 125 SSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGG 142
S+S S + DD+ WLH +FR K G
Sbjct: 66 SNSRSA------GIVRGDDVCWLHVVFRAKTDKG 93
BLAST of Spg035470 vs. NCBI nr
Match:
TYK01784.1 (hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa])
HSP 1 Score: 79.7 bits (195), Expect = 3.1e-11
Identity = 49/93 (52.69%), Postives = 54/93 (58.06%), Query Frame = 0
Query: 68 ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS 127
+SIDY+TEILS RLYGTVCTQ VEIEL VPDTLPTSAESS S S
Sbjct: 655 LSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIELLVPDTLPTSAESSESKS 714
Query: 128 SSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLG 144
S + DD+ WLH +FR K GG G
Sbjct: 715 RSV------GIVRGDDVCWLHVVFRAKTVGGPG 741
BLAST of Spg035470 vs. ExPASy TrEMBL
Match:
A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 55/103 (53.40%), Postives = 61/103 (59.22%), Query Frame = 0
Query: 73 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS--- 132
MTEILSPRLYGTVCTQ VEIELPVPDTLPTSAESS S+SS+
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 133 TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGEPSP 149
+ E V + EDD+ WLHA+FR K AGG GG P
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMP 103
BLAST of Spg035470 vs. ExPASy TrEMBL
Match:
A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 55/103 (53.40%), Postives = 61/103 (59.22%), Query Frame = 0
Query: 73 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS--- 132
MTEILSPRLYGTVCTQ VEIELPVPDTLPTSAESS S+SS+
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 133 TFQEGQRVSL-------EEDDIRWLHAIFRTKLAGGLGGEPSP 149
+ E V + EDD+ WLHA+FR K AGG GG P
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGVMP 103
BLAST of Spg035470 vs. ExPASy TrEMBL
Match:
A0A5D3BP54 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00090 PE=4 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 9.6e-14
Identity = 54/98 (55.10%), Postives = 60/98 (61.22%), Query Frame = 0
Query: 65 FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSR 124
F+E+SI YMTEILS RLYG VCTQ VEIEL VPDTLPTSAES R
Sbjct: 6 FAELSIAYMTEILSLRLYGIVCTQVIFSLSTLSVLHDNDAVVEIELLVPDTLPTSAESFR 65
Query: 125 SSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLGGE 146
S+S S + DD+ WLHAIFR K AGG GG+
Sbjct: 66 SNSRSA------GIVRGDDVCWLHAIFRAKTAGGPGGD 97
BLAST of Spg035470 vs. ExPASy TrEMBL
Match:
A0A5D3CIF4 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00010 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 50/94 (53.19%), Postives = 58/94 (61.70%), Query Frame = 0
Query: 65 FSEISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSR 124
F+E+SIDY+TEILS RLYGTVCTQ VEIELPVPDTLPTSAESS+
Sbjct: 6 FAELSIDYVTEILSLRLYGTVCTQVIFLLSTLSVLHDNDAVVEIELPVPDTLPTSAESSK 65
Query: 125 SSSSSTFQEGQRVSLEEDDIRWLHAIFRTKLAGG 142
S+S S + DD+ WLH +FR K G
Sbjct: 66 SNSRSA------GIVRGDDVCWLHVVFRAKTDKG 93
BLAST of Spg035470 vs. ExPASy TrEMBL
Match:
A0A5A7UCL6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00280 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 49/93 (52.69%), Postives = 54/93 (58.06%), Query Frame = 0
Query: 68 ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSS 127
+SIDY+TEILS RLYGTVCTQ VEIEL VPDTLPTSAESS S S
Sbjct: 655 LSIDYVTEILSLRLYGTVCTQVIFSLSTLSVLRDNDVVVEIELLVPDTLPTSAESSESKS 714
Query: 128 SSTFQEGQRVSLEEDDIRWLHAIFRTKLAGGLG 144
S + DD+ WLH +FR K GG G
Sbjct: 715 RSV------GIVRGDDVCWLHVVFRAKTVGGPG 741
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK27998.1 | 6.8e-14 | 53.40 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| KAA0066851.1 | 6.8e-14 | 53.40 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| TYK00848.1 | 2.0e-13 | 55.10 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| TYK11693.1 | 1.3e-12 | 53.19 | gag protease polyprotein [Cucumis melo var. makuwa] | [more] |
| TYK01784.1 | 3.1e-11 | 52.69 | hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DX39 | 3.3e-14 | 53.40 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... | [more] |
| A0A5A7VMG9 | 3.3e-14 | 53.40 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
| A0A5D3BP54 | 9.6e-14 | 55.10 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0009... | [more] |
| A0A5D3CIF4 | 6.2e-13 | 53.19 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7UCL6 | 1.5e-11 | 52.69 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
