Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGCGGCTTGTTGCCCAAGAAATGGACAGCGTCGCGACGTTGTCTTCACAGCGTCTCGACGCTGTGCCATTTTCCAGCAATTCCAGCTTCGGGTTGGGCTAACTTTTGGGCCTTCTCTTTACTTCTTTTTGGGCTCTTCCATCATGATTGCACTCTTTGGATCCCCTTTTGATCCAAGCTTGGATTTGGGCTTCATTAGCTTCATTTTTGGCACTTTTTCTCCCAAAATCACCGACTTTGCTCCTAATGACAAAATAACAGAATATATTAAATATTTTCATTACTAACACGATTAAAGCACAGAAAAGCCTAATAAATTGGGACTAAAATAACGACATTTTTGCCCGCTATCACACCCCCAAACTTAAGCTTTTGCTAGTCCCGAGCAAAATAAATTCTAAAGATGCATGAAATAGAATCGCTCAAGCCTCAATGATTTTAGAATTCTTAAGATAGAATGGAAAACATGCAAGTGGAATAAGCAAGCACCACATACTCTTGAAGAAATCTTAAACTAGTTTGAACTTAAGATTAATGAATAGCATGCTCAAGACTTATCTATTGATTCTTTTACTAACCTAGATTAGTCTTATGGCTTTCTCCATTTGTTTTCCCCCTACAATGGCTAAGAGCCCCTAATAGGTCGGAGTTCTTCTATCATGCAAAAAAAAGAAACTAGGGTGCCTGATTTTTTTCTTTTTTTATGGGGGAGCAAAACTCTCATTTGATTTTTCACTTTCTTTTTCTTTTGCTACTCCCCCAAACTTGCATTTTGATATCTAATGGTACTAGCTTTCACACTACGGTGCAGGGACCCTTAACCCGAATTTTATTCTCTGGTTGGCCTAACTGATCACACCGCAGGTAGCTCTTTTTACCCCTAGGCTTTTTCTTTTGTGCAAGCAAAAAAACCTTTTTTTTTTTCTTTTTCAACAGATTTTTCTTTTTCTCTCATTTTCTTTTGTTGCTTTTGCTTTTCTCTCAGCAGGCATAGCATTTTTTTCTACCTAGCTCTTTAGAACAATCAAGCATGAACTTCCTAGTGTTAGAAACTAAGCCTATCGGGGTGACAACAAACTTTAAAAATCATAATAAGAATCTAGATTTTCAAAGACGTCATTAGATAAGACTATTGCATGCTTTAGACATCAAAACTAAGTATCAAAAAATTTTAAAATTTCACAATTTCTGCCGTGCTCCCAGATTCCACAACATATAAACCATTTTCTCCCAAAACTTCTAAAATCACATCCTTGGCTATCATAGCTATCTATTCATGCATCCAAAAGAATTCAAATATGCTCAACACAACGAAAGCCTCCCCCACAAAATTAAATTAAACATTGTCCCCAATGTTTTAAAACAGTAAAGCATAAAGAGGGATACTGAGACTTCCCTGAGCTAGGAGCGCTTTATCCTCTTCCTTTCGATCCAAAAAAATGGGATTCTTGGAAATTTTGGGATTTGCTTAAGGTGATCCTGCAAAACAAAATTGGATCACGAAGCAAAGAAAATTATTTACCGCAAAAACAACTATCTAAACTTTTGTAAACCCGAGACTTTCCCTTAGATAATTTTCTCTTATCATCTATTGTGGCTTCATGGTTGAATCTAAGTTGTTGGAAATTATACACTTAAAAAGAAAGGAGATGGGAAAGAAGAAAAGAAAATAAAGGGAAAAGGAAAAGGAAAAGGAAAAAGGAAAAAAAAAAAAGAAAAGAAATGAAGTGGGAATGGACAGCAAGAAGGGCACCACCGACTAGCATTCTTATCAGCCCATTATCAGCCTCATTTCTCATCCTTTTCCACTAAACATTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTAATTTTCTTGAAATTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGACCTAAATCGTATGAGAAGTTGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAGGTTGAATCAGAAGCTCTATTTGGTAAGGTTGGAAATATTATTCAATTATCTACAACTTTCATGAAGAATTTGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGGGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTAGGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAGTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAATACTTCTAAATGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTTCTAGATTCTTAATGACGGACTTGCGAAATGTTTTACAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTTGGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
mRNA sequence
ATGCACGCGGCTTGTTGCCCAAGAAATGGACAGCGTCGCGACGTTGTCTTCACAGCGTCTCGACGCTGTGCCATTTTCCAGCAATTCCAGCTTCGGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTTGAATCAGAAGCTCTATTTGGTAAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
Coding sequence (CDS)
ATGCACGCGGCTTGTTGCCCAAGAAATGGACAGCGTCGCGACGTTGTCTTCACAGCGTCTCGACGCTGTGCCATTTTCCAGCAATTCCAGCTTCGGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTTGAATCAGAAGCTCTATTTGGTAAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
Protein sequence
MHAACCPRNGQRRDVVFTASRRCAIFQQFQLRGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVL
Homology
BLAST of Spg011023 vs. NCBI nr
Match:
KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])
HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 84/129 (65.12%), Postives = 88/129 (68.22%), Query Frame = 0
Query: 63 IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG- 122
+++ NQKLYLV PRGNRSSLQTGELDKT LSTLSVLRDNDAVVSAG
Sbjct: 508 VQKSNQKLYLVWPRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGG 567
Query: 123 -----------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPT 170
RAPLHRRTSKRWLYWACPT RRSVML VEIEL VPDTLPT
Sbjct: 568 PHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPT 626
BLAST of Spg011023 vs. NCBI nr
Match:
TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])
HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 84/129 (65.12%), Postives = 88/129 (68.22%), Query Frame = 0
Query: 63 IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG- 122
+++ NQKLYLV PRGNRSSLQTGELDKT LSTLSVLRDNDAVVSAG
Sbjct: 94 VQKSNQKLYLVWPRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGG 153
Query: 123 -----------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPT 170
RAPLHRRTSKRWLYWACPT RRSVML VEIEL VPDTLPT
Sbjct: 154 PHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPT 212
BLAST of Spg011023 vs. NCBI nr
Match:
KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23
Identity = 73/122 (59.84%), Postives = 81/122 (66.39%), Query Frame = 0
Query: 65 RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAP 124
R++ L PRGNR SLQT E+DKT PLSTLSVL DNDAVVSAG+AP
Sbjct: 73 RISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAP 132
Query: 125 LHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESV 183
L +R RW PT + S LVEIELPVPD LPTSAESSRS+SSTWLELY ESV
Sbjct: 133 LRQR---RWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWLELYFESV 181
BLAST of Spg011023 vs. NCBI nr
Match:
TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 120.2 bits (300), Expect = 1.9e-23
Identity = 73/122 (59.84%), Postives = 81/122 (66.39%), Query Frame = 0
Query: 65 RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAP 124
R++ L PRGNR SLQT E+DKT PLSTLSVL DNDAVVSAG+AP
Sbjct: 73 RISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAP 132
Query: 125 LHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESV 183
L +R RW PT + S LVEIELPVPD LPTSAESSRS+SSTWLELY ESV
Sbjct: 133 LRQR---RWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWLELYFESV 181
BLAST of Spg011023 vs. NCBI nr
Match:
KAA0025357.1 (hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK23443.1 hypothetical protein E5676_scaffold605G00460 [Cucumis melo var. makuwa])
HSP 1 Score: 101.3 bits (251), Expect = 9.3e-18
Identity = 65/129 (50.39%), Postives = 71/129 (55.04%), Query Frame = 0
Query: 54 LFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRD 113
LFGLSY EG K RP+GNR SLQTGELDKT + LSTLSVLRD
Sbjct: 19 LFGLSYPEGTK---------RPKGNRLSLQTGELDKTVIFL----------LSTLSVLRD 78
Query: 114 NDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWL 173
ND V VEIELPVPDTLPTSAES RS+S+TWL
Sbjct: 79 NDVV------------------------------VEIELPVPDTLPTSAESFRSNSNTWL 98
Query: 174 ELYIESVHI 183
ELY ES+H+
Sbjct: 139 ELYFESIHV 98
BLAST of Spg011023 vs. ExPASy TrEMBL
Match:
A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 6.1e-31
Identity = 84/129 (65.12%), Postives = 88/129 (68.22%), Query Frame = 0
Query: 63 IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG- 122
+++ NQKLYLV PRGNRSSLQTGELDKT LSTLSVLRDNDAVVSAG
Sbjct: 508 VQKSNQKLYLVWPRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGG 567
Query: 123 -----------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPT 170
RAPLHRRTSKRWLYWACPT RRSVML VEIEL VPDTLPT
Sbjct: 568 PHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPT 626
BLAST of Spg011023 vs. ExPASy TrEMBL
Match:
A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 6.1e-31
Identity = 84/129 (65.12%), Postives = 88/129 (68.22%), Query Frame = 0
Query: 63 IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG- 122
+++ NQKLYLV PRGNRSSLQTGELDKT LSTLSVLRDNDAVVSAG
Sbjct: 94 VQKSNQKLYLVWPRGNRSSLQTGELDKTVR----------FSLSTLSVLRDNDAVVSAGG 153
Query: 123 -----------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPT 170
RAPLHRRTSKRWLYWACPT RRSVML VEIEL VPDTLPT
Sbjct: 154 PHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVLVMPVEIELSVPDTLPT 212
BLAST of Spg011023 vs. ExPASy TrEMBL
Match:
A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 9.4e-24
Identity = 73/122 (59.84%), Postives = 81/122 (66.39%), Query Frame = 0
Query: 65 RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAP 124
R++ L PRGNR SLQT E+DKT PLSTLSVL DNDAVVSAG+AP
Sbjct: 73 RISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAP 132
Query: 125 LHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESV 183
L +R RW PT + S LVEIELPVPD LPTSAESSRS+SSTWLELY ESV
Sbjct: 133 LRQR---RWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWLELYFESV 181
BLAST of Spg011023 vs. ExPASy TrEMBL
Match:
A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 9.4e-24
Identity = 73/122 (59.84%), Postives = 81/122 (66.39%), Query Frame = 0
Query: 65 RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAP 124
R++ L PRGNR SLQT E+DKT PLSTLSVL DNDAVVSAG+AP
Sbjct: 73 RISNLENLEMPRGNRLSLQTEEIDKTV----------IFPLSTLSVLSDNDAVVSAGQAP 132
Query: 125 LHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESV 183
L +R RW PT + S LVEIELPVPD LPTSAESSRS+SSTWLELY ESV
Sbjct: 133 LRQR---RWECRTGPTTSFFKMFSTFLVEIELPVPDILPTSAESSRSNSSTWLELYFESV 181
BLAST of Spg011023 vs. ExPASy TrEMBL
Match:
A0A5D3DIM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00460 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 4.5e-18
Identity = 65/129 (50.39%), Postives = 71/129 (55.04%), Query Frame = 0
Query: 54 LFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRD 113
LFGLSY EG K RP+GNR SLQTGELDKT + LSTLSVLRD
Sbjct: 19 LFGLSYPEGTK---------RPKGNRLSLQTGELDKTVIFL----------LSTLSVLRD 78
Query: 114 NDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWL 173
ND V VEIELPVPDTLPTSAES RS+S+TWL
Sbjct: 79 NDVV------------------------------VEIELPVPDTLPTSAESFRSNSNTWL 98
Query: 174 ELYIESVHI 183
ELY ES+H+
Sbjct: 139 ELYFESIHV 98
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0065516.1 | 1.3e-30 | 65.12 | uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa] | [more] |
| TYJ98800.1 | 1.3e-30 | 65.12 | uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa] | [more] |
| KAA0037581.1 | 1.9e-23 | 59.84 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| TYK03091.1 | 1.9e-23 | 59.84 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
| KAA0025357.1 | 9.3e-18 | 50.39 | hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK234... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VGQ5 | 6.1e-31 | 65.12 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BG85 | 6.1e-31 | 65.12 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BTP3 | 9.4e-24 | 59.84 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... | [more] |
| A0A5A7T7M6 | 9.4e-24 | 59.84 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
| A0A5D3DIM8 | 4.5e-18 | 50.39 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
