HG10021720 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021720
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr05: 14894465 .. 14894638 (+)
RNA-Seq Expression	HG10021720
Synteny	HG10021720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAAGGTCCCATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAAGCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTCTGTAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

mRNA sequence

ATGCCTCAAGGTCCCATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAAGCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTCTGTAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

Coding sequence (CDS)

ATGCCTCAAGGTCCCATTACAAGGTCAAGAGCCAAGAAGCTACAACAAGCTTTAAGCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTCTGTAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

Protein sequence

MPQGPITRSRAKKLQQALSTHIQAMVTSRKEIVEDVGVLPYMLCKVELQDEDALNAF

Homology

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BLAST of HG10021720 vs. NCBI nr
Match: XP_038900633.1 (uncharacterized protein LOC120087799 [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 3.6e-13
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   MPQGPITRSRAKKLQQALSTHIQAMVTSRKEIVEDVGVLPYMLCKVELQDEDALNAF 58
           M QG I RSRAKKL QAL THIQAMVTS K+IVEDV VL YMLCKVE QDEDALNAF
Sbjct: 104 MSQGSIIRSRAKKL-QALITHIQAMVTSTKDIVEDVRVLSYMLCKVEFQDEDALNAF 159

The following BLAST results are available for this feature:

BLAST of HG10021720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900633.1	3.6e-13	82.46	uncharacterized protein LOC120087799 [Benincasa hispida]	[more]

BLAST of HG10021720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021720 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10021720.1	HG10021720.1	mRNA