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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTTCCCATTTCCAACTTATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGTGGACATGGTTATTGTAGAGGATGTGATTGTGATTATATTGCTCTCGTTTCGACGGTAGAAGGAGACGGTGATGACGATGATGACGGTGGATACGACTTTGCTCCGGCTGCTTGA mRNA sequence ATGGTTCCCATTTCCAACTTATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGTGGACATGGTTATTGTAGAGGATGTGATTGTGATTATATTGCTCTCGTTTCGACGGTAGAAGGAGACGGTGATGACGATGATGACGGTGGATACGACTTTGCTCCGGCTGCTTGA Coding sequence (CDS) ATGGTTCCCATTTCCAACTTATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGTGGACATGGTTATTGTAGAGGATGTGATTGTGATTATATTGCTCTCGTTTCGACGGTAGAAGGAGACGGTGATGACGATGATGACGGTGGATACGACTTTGCTCCGGCTGCTTGA Protein sequence MVPISNLSFALWLKNLEGGGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA
Homology
BLAST of HG10006683 vs. NCBI nr
Match: KGN60650.1 (hypothetical protein Csa_019209 [Cucumis sativus]) HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11 Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 0
Query: 1 MVPISNLSFALWLKNLEG-GGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
M PIS L L LKNL G GGHGY GCDC Y LVS EGD DDDDGGYDFAPAA
Sbjct: 1 MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGD-SDDDDGGYDFAPAA 56
BLAST of HG10006683 vs. NCBI nr
Match: KAG6599418.1 (hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07 Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 0
Query: 1 MVPISNLSFALWLKNLEGGGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
MVPIS A WL +L G HGY DC YIA VS + DGDDDDD YDFAPAA
Sbjct: 60 MVPISK-PMASWLTSLGAGRHGYGERRDCGYIAPVSMAKEDGDDDDDDSYDFAPAA 114
BLAST of HG10006683 vs. ExPASy TrEMBL
Match: A0A0A0LF41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11 Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 0
Query: 1 MVPISNLSFALWLKNLEG-GGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
M PIS L L LKNL G GGHGY GCDC Y LVS EGD DDDDGGYDFAPAA
Sbjct: 1 MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGD-SDDDDGGYDFAPAA 56
BLAST of HG10006683 vs. ExPASy TrEMBL
Match: A0A5N5H4H8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_037670 PE=4 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04 Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0
Query: 1 MVPISNLSFALWLKNLE-GGGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
M P+SN+S W K E G G + D ++ V+ EGDGDDDDDG YDFAPAA
Sbjct: 1 MCPVSNISIVSWCKKHEDGDGRVIAKFED---LSPVTYSEGDGDDDDDGDYDFAPAA 54
BLAST of HG10006683 vs. ExPASy TrEMBL
Match: A0A540MEH9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_017213 PE=4 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04 Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 0
Query: 1 MVPISNLSFALWLKNLEGGGHGYCRGCDCDYIALVSTVEGDG--DDDDDGGYDFAPAA 57
M PISN+S A W K E GG + ++ V+ EGDG DDDDDG YDFAPAA
Sbjct: 1 MCPISNISIASWCKKHEDGGGRV--NAKFEDVSPVTCSEGDGDDDDDDDGDYDFAPAA 56
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN60650.1 | 4.3e-11 | 70.18 | hypothetical protein Csa_019209 [Cucumis sativus] | [more] |
| KAG6599418.1 | 2.2e-07 | 60.71 | hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LF41 | 2.1e-11 | 70.18 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1 | [more] |
| A0A5N5H4H8 | 7.2e-04 | 50.88 | Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... | [more] |
| A0A540MEH9 | 7.2e-04 | 51.72 | Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_017213 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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