Moc06g05100 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g05100
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr6: 3710703 .. 3711592 (+)
RNA-Seq Expression	Moc06g05100
Synteny	Moc06g05100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGACAAAACAACTGAGCAAGTCGCACGTCGACCGACTGGTAGAGATAGAAGAACAACTTCTCTACCTAAGAGAAGTCCCAGATTCCCTCCGTCTGCTGGAGGCGCGAGTTGATGAATTCTCCGAGAAGTTTGGAGAAATAGACGCAGTGAATGCCCGTGTAGACGGGTTGCCGATACAAGATATAGCCATGAGGGTTGAGACCCTAGAAAGCAAAGCTACGCGTCCTGGTAGCTTCGAACGTGGAGATAGTTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGAGAGTTAAACAACTCGCATTCGGCAATGATGCAATTGTTTAACGAAATGACAGAAGACTTCAAAGTAATCATCGACACCCTCCGAGCTGAGATGACTGAAATAAGCACTAGAGTGAACCTAACCATGCGAGCCGTGGAAATCAGGCTCCCAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTCAATGGCAATAGAGACGCAAAAGATCTCGAGAACTTCCTGTTCGACGTAGAACAGTACTTCAAGGCTACGGGGACAACGTCAGAAGAGATGAAAGTGACTTTGGCCACCATGCATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGACATTCAGAATGGTCGATGCACGATCAATAGCTGGGATGATCTGAAGAAAGAATTGAGGGGTCAGTTCTTCCCCGACAATGTCGAGTTCATGGCTAGAAGGAAGCTACGTGAACTCCGACACACTGGAACAATCTGGGACTACGTGAAACAATTCTCTGTCGTGATGCTGGATATTCGCGACATGTCAGAGAAAGACAAGGTGTTCGTCTTTATCGAAGGATTGAAACCGTGA

mRNA sequence

ATGTCGGCGACAAAACAACTGAGCAAGTCGCACGTCGACCGACTGGTAGAGATAGAAGAACAACTTCTCTACCTAAGAGAAGTCCCAGATTCCCTCCGTCTGCTGGAGGCGCGAGTTGATGAATTCTCCGAGAAGTTTGGAGAAATAGACGCAGTGAATGCCCGTGTAGACGGGTTGCCGATACAAGATATAGCCATGAGGGTTGAGACCCTAGAAAGCAAAGCTACGCGTCCTGGTAGCTTCGAACGTGGAGATAGTTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGAGAGTTAAACAACTCGCATTCGGCAATGATGCAATTGTTTAACGAAATGACAGAAGACTTCAAAGCTCCCAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTCAATGGCAATAGAGACGCAAAAGATCTCGAGAACTTCCTGTTCGACGTAGAACAGTACTTCAAGGCTACGGGGACAACGTCAGAAGAGATGAAAGTGACTTTGGCCACCATGCATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGACATTCAGAATGGTCGATGCACGATCAATAGCTGGGATGATCTGAAGAAAGAATTGAGGGGTCAGTTCTTCCCCGACAATGTCGAGTTCATGGCTAGAAGGAAGCTACGTGAACTCCGACACACTGGAACAATCTGGGACTACGTGAAACAATTCTCTGTCGTGATGCTGGATATTCGCGACATGTCAGAGAAAGACAAGGTGTTCGTCTTTATCGAAGGATTGAAACCGTGA

Coding sequence (CDS)

ATGTCGGCGACAAAACAACTGAGCAAGTCGCACGTCGACCGACTGGTAGAGATAGAAGAACAACTTCTCTACCTAAGAGAAGTCCCAGATTCCCTCCGTCTGCTGGAGGCGCGAGTTGATGAATTCTCCGAGAAGTTTGGAGAAATAGACGCAGTGAATGCCCGTGTAGACGGGTTGCCGATACAAGATATAGCCATGAGGGTTGAGACCCTAGAAAGCAAAGCTACGCGTCCTGGTAGCTTCGAACGTGGAGATAGTTCCACGAACCCAAACACACAGATAGAAGTACGTATGGGAGAGTTAAACAACTCGCATTCGGCAATGATGCAATTGTTTAACGAAATGACAGAAGACTTCAAAGCTCCCAACCAAGCGAACATGGGGTTCAACAAGTTGAAGGTCCCAGAGCCCAAACCATTCAATGGCAATAGAGACGCAAAAGATCTCGAGAACTTCCTGTTCGACGTAGAACAGTACTTCAAGGCTACGGGGACAACGTCAGAAGAGATGAAAGTGACTTTGGCCACCATGCATCTTACTGATGATGCAAAGCTGTGGTGGAGATCTAAAGTCAACGACATTCAGAATGGTCGATGCACGATCAATAGCTGGGATGATCTGAAGAAAGAATTGAGGGGTCAGTTCTTCCCCGACAATGTCGAGTTCATGGCTAGAAGGAAGCTACGTGAACTCCGACACACTGGAACAATCTGGGACTACGTGAAACAATTCTCTGTCGTGATGCTGGATATTCGCGACATGTCAGAGAAAGACAAGGTGTTCGTCTTTATCGAAGGATTGAAACCGTGA

Protein sequence

MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFKAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRGQFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLKP

Homology

[Close]

BLAST of Moc06g05100 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 508.8 bits (1309), Expect = 2.8e-140
Identity = 261/295 (88.47%), Postives = 264/295 (89.49%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           MS TKQLSKSHVDRLVEIEEQLLYLREVPD LRLLEARVDEFSEKFGEIDAVNAR+DGLP
Sbjct: 1   MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK 120
           IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK
Sbjct: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK 120

Query: 121 ---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLENFL 180
                                      APNQANMGFNKLKVPEPKPFNGNRDAKDLENFL
Sbjct: 121 VTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFL 180

Query: 181 FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240
           FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG
Sbjct: 181 FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240

Query: 241 QFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLK 269
           QFFPDNVEFMARRKLRELRHTGTI DYVKQFS VM+DIRDMSEKDKVFVFI+GLK
Sbjct: 241 QFFPDNVEFMARRKLRELRHTGTIRDYVKQFSAVMMDIRDMSEKDKVFVFIZGLK 295

[Close]

BLAST of Moc06g05100 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 491.9 bits (1265), Expect = 3.5e-135
Identity = 256/295 (86.78%), Postives = 256/295 (86.78%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP
Sbjct: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK 120
           IQDIAMRVET ESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHS MMQLFNEMTEDFK
Sbjct: 61  IQDIAMRVETXESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSTMMQLFNEMTEDFK 120

Query: 121 ---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLENFL 180
                                      APNQ NMGFNKLKVPEPKPFNGNR  KDLENF 
Sbjct: 121 VTIDTLRAEMTEISTRVNLTMRAVGNQAPNQXNMGFNKLKVPEPKPFNGNRXXKDLENFX 180

Query: 181 FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240
           FDVEQYFK TGT SE MKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG
Sbjct: 181 FDVEQYFKXTGTXSEXMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240

Query: 241 QFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLK 269
           QFF DNVEFMARRKLRELRHTGTI DYVKQFS VMLDIRDMSEKDKVFVFIEGLK
Sbjct: 241 QFFLDNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLK 295

[Close]

BLAST of Moc06g05100 vs. NCBI nr
Match: KAA0057594.1 (uncharacterized protein E6C27_scaffold497G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 8.8e-86
Identity = 169/298 (56.71%), Postives = 215/298 (72.15%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           M ++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLP
Sbjct: 1   MLSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTED 120
           IQ++  RV+ LE  + A R  ++ERG+SS+     +E R+ EL+N+   ++++ N+M+ED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVDELDNAQKTLLEMINDMSED 120

Query: 121 FK---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLEN 180
           F+                           AP    +  +K+KVPEPKPF G RDAK LEN
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPVGGAISVSKVKVPEPKPFCGVRDAKALEN 180

Query: 181 FLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKEL 240
           ++FD+EQYFKAT T +EE KVTLATMHL++DAKLWWRS+  DIQ GRCT+++WD LK+EL
Sbjct: 181 YIFDLEQYFKATNTVTEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RGQFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLKP 270
           R QFFPDNVE +ARRKLR+LRHTG IW+YVKQF+ +MLDIRDMSEKDKVF F+EGLKP
Sbjct: 241 RSQFFPDNVEILARRKLRDLRHTGEIWEYVKQFAGLMLDIRDMSEKDKVFYFVEGLKP 298

[Close]

BLAST of Moc06g05100 vs. NCBI nr
Match: TYK21000.1 (uncharacterized protein E5676_scaffold328G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 8.8e-86
Identity = 169/298 (56.71%), Postives = 215/298 (72.15%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           M ++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLP
Sbjct: 1   MLSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTED 120
           IQ++  RV+ LE  + A R  ++ERG+SS+     +E R+ EL+N+   ++++ N+M+ED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVDELDNAQKTLLEMINDMSED 120

Query: 121 FK---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLEN 180
           F+                           AP    +  +K+KVPEPKPF G RDAK LEN
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPVGGAISVSKVKVPEPKPFCGVRDAKALEN 180

Query: 181 FLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKEL 240
           ++FD+EQYFKAT T +EE KVTLATMHL++DAKLWWRS+  DIQ GRCT+++WD LK+EL
Sbjct: 181 YIFDLEQYFKATNTVTEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RGQFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLKP 270
           R QFFPDNVE +ARRKLR+LRHTG IW+YVKQF+ +MLDIRDMSEKDKVF F+EGLKP
Sbjct: 241 RSQFFPDNVEILARRKLRDLRHTGEIWEYVKQFAGLMLDIRDMSEKDKVFYFVEGLKP 298

[Close]

BLAST of Moc06g05100 vs. NCBI nr
Match: TYK19839.1 (uncharacterized protein E5676_scaffold811G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 3.4e-85
Identity = 169/298 (56.71%), Postives = 215/298 (72.15%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTED 120
           IQ++  RV+ LE  + A R  ++ERG+SS+     +E R+GEL+N+   ++++ N M+ED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGLGAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FK---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLEN 180
           F+                           AP    +  +K+KVPEPKPF G RDAK LEN
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAISVSKVKVPEPKPFCGARDAKALEN 180

Query: 181 FLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKEL 240
           ++FD+EQYFKAT T +EE KVTLATMHL++DAKLWWRS+  DIQ GRCT+++WD LK+EL
Sbjct: 181 YIFDLEQYFKATNTIAEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RGQFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLKP 270
           R QFFP+NVE +ARRKLR+LRHTG I +YVKQF+ +MLDIRDMSEKDKVF F+EGLKP
Sbjct: 241 RSQFFPENVEILARRKLRDLRHTGEIREYVKQFAGLMLDIRDMSEKDKVFYFVEGLKP 298

[Close]

BLAST of Moc06g05100 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.0e-140
Identity = 262/295 (88.81%), Postives = 264/295 (89.49%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           MS TKQLSKSHVDRLVEIEEQLLYLREVPD LRLLEARVDEFSEKFGEIDAVNAR+DGLP
Sbjct: 1   MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK 120
           IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK
Sbjct: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK 120

Query: 121 ---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLENFL 180
                                      APNQANMGFNKLKVPEPKPFNGNRDAKDLENFL
Sbjct: 121 VTIDTLRAEMTEISTRVNLTMRAVGNQAPNQANMGFNKLKVPEPKPFNGNRDAKDLENFL 180

Query: 181 FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240
           FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG
Sbjct: 181 FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240

Query: 241 QFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLK 269
           QFFPDNVEFMARRKLRELRHTGTI DYVKQFS VM+DIRDMSEKDKVFVFIEGLK
Sbjct: 241 QFFPDNVEFMARRKLRELRHTGTIRDYVKQFSAVMMDIRDMSEKDKVFVFIEGLK 295

[Close]

BLAST of Moc06g05100 vs. ExPASy TrEMBL
Match: A0A6J1DK29 (uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021829 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 1.7e-135
Identity = 256/295 (86.78%), Postives = 256/295 (86.78%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP
Sbjct: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61  IQDIAMRVETLESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTEDFK 120
           IQDIAMRVET ESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHS MMQLFNEMTEDFK
Sbjct: 61  IQDIAMRVETXESKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSTMMQLFNEMTEDFK 120

Query: 121 ---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLENFL 180
                                      APNQ NMGFNKLKVPEPKPFNGNR  KDLENF 
Sbjct: 121 VTIDTLRAEMTEISTRVNLTMRAVGNQAPNQXNMGFNKLKVPEPKPFNGNRXXKDLENFX 180

Query: 181 FDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240
           FDVEQYFK TGT SE MKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG
Sbjct: 181 FDVEQYFKXTGTXSEXMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKELRG 240

Query: 241 QFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLK 269
           QFF DNVEFMARRKLRELRHTGTI DYVKQFS VMLDIRDMSEKDKVFVFIEGLK
Sbjct: 241 QFFLDNVEFMARRKLRELRHTGTIRDYVKQFSAVMLDIRDMSEKDKVFVFIEGLK 295

[Close]

BLAST of Moc06g05100 vs. ExPASy TrEMBL
Match: A0A5D3DC04 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00270 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 4.3e-86
Identity = 169/298 (56.71%), Postives = 215/298 (72.15%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           M ++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLP
Sbjct: 1   MLSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTED 120
           IQ++  RV+ LE  + A R  ++ERG+SS+     +E R+ EL+N+   ++++ N+M+ED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVDELDNAQKTLLEMINDMSED 120

Query: 121 FK---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLEN 180
           F+                           AP    +  +K+KVPEPKPF G RDAK LEN
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPVGGAISVSKVKVPEPKPFCGVRDAKALEN 180

Query: 181 FLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKEL 240
           ++FD+EQYFKAT T +EE KVTLATMHL++DAKLWWRS+  DIQ GRCT+++WD LK+EL
Sbjct: 181 YIFDLEQYFKATNTVTEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RGQFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLKP 270
           R QFFPDNVE +ARRKLR+LRHTG IW+YVKQF+ +MLDIRDMSEKDKVF F+EGLKP
Sbjct: 241 RSQFFPDNVEILARRKLRDLRHTGEIWEYVKQFAGLMLDIRDMSEKDKVFYFVEGLKP 298

[Close]

BLAST of Moc06g05100 vs. ExPASy TrEMBL
Match: A0A5A7UR61 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00710 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 4.3e-86
Identity = 169/298 (56.71%), Postives = 215/298 (72.15%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           M ++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLP
Sbjct: 1   MLSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTED 120
           IQ++  RV+ LE  + A R  ++ERG+SS+     +E R+ EL+N+   ++++ N+M+ED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVDELDNAQKTLLEMINDMSED 120

Query: 121 FK---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLEN 180
           F+                           AP    +  +K+KVPEPKPF G RDAK LEN
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPVGGAISVSKVKVPEPKPFCGVRDAKALEN 180

Query: 181 FLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKEL 240
           ++FD+EQYFKAT T +EE KVTLATMHL++DAKLWWRS+  DIQ GRCT+++WD LK+EL
Sbjct: 181 YIFDLEQYFKATNTVTEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RGQFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLKP 270
           R QFFPDNVE +ARRKLR+LRHTG IW+YVKQF+ +MLDIRDMSEKDKVF F+EGLKP
Sbjct: 241 RSQFFPDNVEILARRKLRDLRHTGEIWEYVKQFAGLMLDIRDMSEKDKVFYFVEGLKP 298

[Close]

BLAST of Moc06g05100 vs. ExPASy TrEMBL
Match: A0A5D3D8P6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00460 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.6e-85
Identity = 169/298 (56.71%), Postives = 215/298 (72.15%), Query Frame = 0


Query: 1   MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60
           MS++    K+  DRLVEIEEQ+LYL EVPDS+R LE+RVDE SEK   IDAV  RV+GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IQDIAMRVETLE--SKATRPGSFERGDSSTNPNTQIEVRMGELNNSHSAMMQLFNEMTED 120
           IQ++  RV+ LE  + A R  ++ERG+SS+     +E R+GEL+N+   ++++ N M+ED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGLGAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FK---------------------------APNQANMGFNKLKVPEPKPFNGNRDAKDLEN 180
           F+                           AP    +  +K+KVPEPKPF G RDAK LEN
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAISVSKVKVPEPKPFCGARDAKALEN 180

Query: 181 FLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDIQNGRCTINSWDDLKKEL 240
           ++FD+EQYFKAT T +EE KVTLATMHL++DAKLWWRS+  DIQ GRCT+++WD LK+EL
Sbjct: 181 YIFDLEQYFKATNTIAEEAKVTLATMHLSEDAKLWWRSRYVDIQEGRCTVDTWDALKREL 240

Query: 241 RGQFFPDNVEFMARRKLRELRHTGTIWDYVKQFSVVMLDIRDMSEKDKVFVFIEGLKP 270
           R QFFP+NVE +ARRKLR+LRHTG I +YVKQF+ +MLDIRDMSEKDKVF F+EGLKP
Sbjct: 241 RSQFFPENVEILARRKLRDLRHTGEIREYVKQFAGLMLDIRDMSEKDKVFYFVEGLKP 298

The following BLAST results are available for this feature:

BLAST of Moc06g05100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150099.1	2.8e-140	88.47	uncharacterized protein LOC111018360 [Momordica charantia]	[more]
XP_022154605.1	3.5e-135	86.78	uncharacterized protein LOC111021829 [Momordica charantia]	[more]
KAA0057594.1	8.8e-86	56.71	uncharacterized protein E6C27_scaffold497G00710 [Cucumis melo var. makuwa]	[more]
TYK21000.1	8.8e-86	56.71	uncharacterized protein E5676_scaffold328G00270 [Cucumis melo var. makuwa]	[more]
TYK19839.1	3.4e-85	56.71	uncharacterized protein E5676_scaffold811G00460 [Cucumis melo var. makuwa]	[more]

BLAST of Moc06g05100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g05100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D906	1.0e-140	88.81	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1	[more]
A0A6J1DK29	1.7e-135	86.78	uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5D3DC04	4.3e-86	56.71	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UR61	4.3e-86	56.71	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D8P6	1.6e-85	56.71	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Moc06g05100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 174..269 e-value: 2.0E-18 score: 66.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 107..269
None	No IPR available	PANTHER	PTHR34482:SF18	RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED	coord: 107..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g05100.1	Moc06g05100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding