Sed0011426.1 (mRNA) Chayote v1

Overview


Name	Sed0011426.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	LG11: 16852765 .. 16854547 (-)
Sequence length	1783
RNA-Seq Expression	Sed0011426.1
Synteny	Sed0011426.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTAATCATTTCATCGTGAATAAGATTATCCATTTATACGCTTCATGGTATCAGAGCCTTGAAACTCTCTCAACCCTAGCTGTTGTTGTATTCATAGTCATTGGACCATCAAGACATAGCTAATCATCAAGCTATTGTCACATATATGTCCTTGACTCCCAACAGTCTCTCACGGGTCTCATCGGTGATTATCAGCAGCCTCGCCACTCATACCACTCAAATTGGTTCATCGTCACAACTAGTTTTTCTTTTAATTAGTGTATTCAAGATCAGTTTAGTGCGATTCAAATTCAATTAGATCGGTTTAATCAAACCTGTTTAAACCGGTCAACGAGAATAGTCAGCGGTCAACTGTCAACTGTTATCAGTCAACTATCAACAGTCAACGGTCAACGGTCAACTGTCATCGATCAACAGTCAATTGTCAGCGGTCAATAGTCAAAGTCAACGATCAGCGGTCAACAATTTAAGCTTATCTTCAAATCAGTTTCAATTTTTTATTCCTCATATTTAAATATGCCAATTTCTCAAGTTACCAAATTTGGAGATTTTGCTCTTCACACACAAGTTTCCTCAACAGAGTGGATAGTTGACTCTGGAGCCTCCGATCACATGACAGGTGATAAGACATTGTTCACAACTTACACTCTGCATAAAGGAGATATTTATGTTCGCATTGCTGATGGCAGCCCCACTAAAGTTATCGGTGTTGGGAATATTCAAGTATCAGAATCTTTGCTACTTCAATCAGTTTTCTTTGTGCCTAAACTTGAATATAACCTACTATCTGTGAGTAGATTGAATAAGGATTTGAATTGCGAAACTAATTTTTGTGCAAATTCATGTATTTTTCAGGACTTGGGATCAAGGAAAGTGATTGGTCGTGCCGAATTATGTGGAGGATTGTATCTTCTCCATGTAACATCTCCTTTGAATAAACCTGTAAACCAGGCTAGGAATGAGTCAGCATGTTTCGTTTCAAATTCTTTAGATCTCTCGAATAGCGATAATCTTGTTATGTCATGGCATTATCGCTTAGGTCATCCAAATTTTGCATACCTTGAACGTCTATTTCCATCGCTATTTATTCATAAAAAGAGCAAATTTTTTCAATGTGAAATTTGCCAACTCTCCAAACACACTCGTACTTCATATTTGCCTCAGCCTTATATACCTTCCCAACCTTTCTCCCTTATCCATGGAGACATTTGGGGACCTTCAAGAGTAAACAATGTCAGTGGAGCACGTTGGTTCCTCCTTTTTGTTGATGACCATACTCGACTAAGTTGGACATTTCTTATGAAAGATAAAGGCGAAACAAGTCATTTATTCAAAGTCTTTCATAAAATGATCCAGAATCAATTTTCAACAAATGTCAAAATCCTTAAGACTAACAATGCTCGAGATTTCTTCAACTCTAATTTGGGAGAATATCTTCAAACTCATGGTATTGTTCACCAGAGTTCTTATGTCTACACACCCCAACAAAACGGTGTGGTCGAACGCAAAAATCGCCACCTTCTCGATGTAGCTCGATCAATTATGCTCACTTCAAATGTTCCAAAAAGTTTTTGGGGTGAAGCGATCCTAGCAGCTATATATCTTATAAATCGCATGCCATCTCGTATCCTAAAATTCCAAACCCCTTTACATACCCTACTTTCTATACATCCTACATCCCATCTTGTGTCTCATCTACCATTCAAGATATTCGGATGTAATGCCTTTGTTCATGTCCACTCTCAGCATCGAAGTAAACTTGATGCTCGATCCATAAAATGA

mRNA sequence

TTGTAATCATTTCATCGTGAATAAGATTATCCATTTATACGCTTCATGGTATCAGAGCCTTGAAACTCTCTCAACCCTAGCTGTTGTTGTATTCATAGTCATTGGACCATCAAGACATAGCTAATCATCAAGCTATTGTCACATATATGTCCTTGACTCCCAACAGTCTCTCACGGGTCTCATCGGTGATTATCAGCAGCCTCGCCACTCATACCACTCAAATTGGTTCATCGTCACAACTAGTTTTTCTTTTAATTAGTGTATTCAAGATCAGTTTAGTGCGATTCAAATTCAATTAGATCGGTTTAATCAAACCTGTTTAAACCGGTCAACGAGAATAGTCAGCGGTCAACTGTCAACTGTTATCAGTCAACTATCAACAGTCAACGGTCAACGGTCAACTGTCATCGATCAACAGTCAATTGTCAGCGGTCAATAGTCAAAGTCAACGATCAGCGGTCAACAATTTAAGCTTATCTTCAAATCAGTTTCAATTTTTTATTCCTCATATTTAAATATGCCAATTTCTCAAGTTACCAAATTTGGAGATTTTGCTCTTCACACACAAGTTTCCTCAACAGAGTGGATAGTTGACTCTGGAGCCTCCGATCACATGACAGGTGATAAGACATTGTTCACAACTTACACTCTGCATAAAGGAGATATTTATGTTCGCATTGCTGATGGCAGCCCCACTAAAGTTATCGGTGTTGGGAATATTCAAGTATCAGAATCTTTGCTACTTCAATCAGTTTTCTTTGTGCCTAAACTTGAATATAACCTACTATCTGTGAGTAGATTGAATAAGGATTTGAATTGCGAAACTAATTTTTGTGCAAATTCATGTATTTTTCAGGACTTGGGATCAAGGAAAGTGATTGGTCGTGCCGAATTATGTGGAGGATTGTATCTTCTCCATGTAACATCTCCTTTGAATAAACCTGTAAACCAGGCTAGGAATGAGTCAGCATGTTTCGTTTCAAATTCTTTAGATCTCTCGAATAGCGATAATCTTGTTATGTCATGGCATTATCGCTTAGGTCATCCAAATTTTGCATACCTTGAACGTCTATTTCCATCGCTATTTATTCATAAAAAGAGCAAATTTTTTCAATGTGAAATTTGCCAACTCTCCAAACACACTCGTACTTCATATTTGCCTCAGCCTTATATACCTTCCCAACCTTTCTCCCTTATCCATGGAGACATTTGGGGACCTTCAAGAGTAAACAATGTCAGTGGAGCACGTTGGTTCCTCCTTTTTGTTGATGACCATACTCGACTAAGTTGGACATTTCTTATGAAAGATAAAGGCGAAACAAGTCATTTATTCAAAGTCTTTCATAAAATGATCCAGAATCAATTTTCAACAAATGTCAAAATCCTTAAGACTAACAATGCTCGAGATTTCTTCAACTCTAATTTGGGAGAATATCTTCAAACTCATGGTATTGTTCACCAGAGTTCTTATGTCTACACACCCCAACAAAACGGTGTGGTCGAACGCAAAAATCGCCACCTTCTCGATGTAGCTCGATCAATTATGCTCACTTCAAATGTTCCAAAAAGTTTTTGGGGTGAAGCGATCCTAGCAGCTATATATCTTATAAATCGCATGCCATCTCGTATCCTAAAATTCCAAACCCCTTTACATACCCTACTTTCTATACATCCTACATCCCATCTTGTGTCTCATCTACCATTCAAGATATTCGGATGTAATGCCTTTGTTCATGTCCACTCTCAGCATCGAAGTAAACTTGATGCTCGATCCATAAAATGA

Coding sequence (CDS)

ATGCCAATTTCTCAAGTTACCAAATTTGGAGATTTTGCTCTTCACACACAAGTTTCCTCAACAGAGTGGATAGTTGACTCTGGAGCCTCCGATCACATGACAGGTGATAAGACATTGTTCACAACTTACACTCTGCATAAAGGAGATATTTATGTTCGCATTGCTGATGGCAGCCCCACTAAAGTTATCGGTGTTGGGAATATTCAAGTATCAGAATCTTTGCTACTTCAATCAGTTTTCTTTGTGCCTAAACTTGAATATAACCTACTATCTGTGAGTAGATTGAATAAGGATTTGAATTGCGAAACTAATTTTTGTGCAAATTCATGTATTTTTCAGGACTTGGGATCAAGGAAAGTGATTGGTCGTGCCGAATTATGTGGAGGATTGTATCTTCTCCATGTAACATCTCCTTTGAATAAACCTGTAAACCAGGCTAGGAATGAGTCAGCATGTTTCGTTTCAAATTCTTTAGATCTCTCGAATAGCGATAATCTTGTTATGTCATGGCATTATCGCTTAGGTCATCCAAATTTTGCATACCTTGAACGTCTATTTCCATCGCTATTTATTCATAAAAAGAGCAAATTTTTTCAATGTGAAATTTGCCAACTCTCCAAACACACTCGTACTTCATATTTGCCTCAGCCTTATATACCTTCCCAACCTTTCTCCCTTATCCATGGAGACATTTGGGGACCTTCAAGAGTAAACAATGTCAGTGGAGCACGTTGGTTCCTCCTTTTTGTTGATGACCATACTCGACTAAGTTGGACATTTCTTATGAAAGATAAAGGCGAAACAAGTCATTTATTCAAAGTCTTTCATAAAATGATCCAGAATCAATTTTCAACAAATGTCAAAATCCTTAAGACTAACAATGCTCGAGATTTCTTCAACTCTAATTTGGGAGAATATCTTCAAACTCATGGTATTGTTCACCAGAGTTCTTATGTCTACACACCCCAACAAAACGGTGTGGTCGAACGCAAAAATCGCCACCTTCTCGATGTAGCTCGATCAATTATGCTCACTTCAAATGTTCCAAAAAGTTTTTGGGGTGAAGCGATCCTAGCAGCTATATATCTTATAAATCGCATGCCATCTCGTATCCTAAAATTCCAAACCCCTTTACATACCCTACTTTCTATACATCCTACATCCCATCTTGTGTCTCATCTACCATTCAAGATATTCGGATGTAATGCCTTTGTTCATGTCCACTCTCAGCATCGAAGTAAACTTGATGCTCGATCCATAAAATGA

Protein sequence

MPISQVTKFGDFALHTQVSSTEWIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFVPKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVTSPLNKPVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCEICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFLMKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYTPQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTLLSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK

Homology

[Close]

BLAST of Sed0011426.1 vs. NCBI nr
Match: RVW54646.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 480.3 bits (1235), Expect = 1.7e-131
Identity = 235/399 (58.90%), Postives = 291/399 (72.93%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRIADGS +KV G G++ +S  L L SV  V
Sbjct: 67  WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNSVLLV 126

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVTSPLNKP 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L       K 
Sbjct: 127 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYIL-------KE 186

Query: 143 VNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCEI 202
            +  + +  C  S S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  + F+CEI
Sbjct: 187 RHDPQEQPQC-NSFSVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPQSFECEI 246

Query: 203 CQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFLM 262
           CQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FLM
Sbjct: 247 CQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFLM 306

Query: 263 KDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYTP 322
           K+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V TP
Sbjct: 307 KEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDTP 366

Query: 323 QQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTLL 382
           QQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TLL
Sbjct: 367 QQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTLL 426

Query: 383 SIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
              PT+ L+S +P KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 427 KSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLK 456

[Close]

BLAST of Sed0011426.1 vs. NCBI nr
Match: CAN75466.1 (hypothetical protein VITISV_025054 [Vitis vinifera])

HSP 1 Score: 479.9 bits (1234), Expect = 2.2e-131
Identity = 233/400 (58.25%), Postives = 290/400 (72.50%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+ +  ++ VRIADGS +KV G G++ +S  L L SV  V
Sbjct: 493 WIVDSGASDHMTGDATIFDTYSSYPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNSVLLV 552

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L     P  +
Sbjct: 553 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYILKERHDPQEQ 612

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  + F+CE
Sbjct: 613 PQMTVGSNSF-----SVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPQSFECE 672

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 673 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFL 732

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V T
Sbjct: 733 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDT 792

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMP R+LKFQTP  TL
Sbjct: 793 PQQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPXRVLKFQTPCQTL 852

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +P KIFGC+ FVH++ QHRSK+D RS+K
Sbjct: 853 LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKJDPRSLK 886

[Close]

BLAST of Sed0011426.1 vs. NCBI nr
Match: RVW88342.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 478.4 bits (1230), Expect = 6.3e-131
Identity = 235/400 (58.75%), Postives = 289/400 (72.25%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRIADGS +KV G G++ +S  L L SV  V
Sbjct: 82  WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNSVLLV 141

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L     P  +
Sbjct: 142 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYILKERHDPQEQ 201

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  K F+CE
Sbjct: 202 PQMTVGSNSF-----SVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPKSFECE 261

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 262 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFISFIDDHTRLTWVFL 321

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V T
Sbjct: 322 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDT 381

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TL
Sbjct: 382 PQQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTL 441

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +  KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 442 LKSFPTTRLISTVLPKIFGCSVFVHINQQHRSKLDPRSLK 475

[Close]

BLAST of Sed0011426.1 vs. NCBI nr
Match: CAN80566.1 (hypothetical protein VITISV_029672 [Vitis vinifera])

HSP 1 Score: 477.2 bits (1227), Expect = 1.4e-130
Identity = 233/400 (58.25%), Postives = 288/400 (72.00%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRIADGS +KV G G++ +S  L L  V  V
Sbjct: 378 WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNFVLLV 437

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L     P  +
Sbjct: 438 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYILKERHDPQEQ 497

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  K F+CE
Sbjct: 498 PQMTVGSNSF-----SVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPKSFECE 557

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 558 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFL 617

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   G+VH SS V T
Sbjct: 618 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGLVHLSSCVDT 677

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+V RS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TL
Sbjct: 678 PQQNGIAERKNRHLLEVVRSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTL 737

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +P KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 738 LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLK 771

[Close]

BLAST of Sed0011426.1 vs. NCBI nr
Match: RVW38886.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 477.2 bits (1227), Expect = 1.4e-130
Identity = 233/400 (58.25%), Postives = 287/400 (71.75%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRI DGS +KV G G++ +S  L L SV  V
Sbjct: 44  WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIVDGSLSKVAGTGSVVLSRDLTLNSVLLV 103

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG  E C GLY+L     P  +
Sbjct: 104 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNVEKCSGLYILKERHDPQEQ 163

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHY LGHPN  YL+ LFPSLF +K  K F+CE
Sbjct: 164 PQMTVGSNSF-----SVSCQNNDSAIKLWHYHLGHPNVMYLKHLFPSLF-NKNPKSFECE 223

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 224 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFL 283

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V T
Sbjct: 284 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDT 343

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TL
Sbjct: 344 PQQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTL 403

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +P KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 404 LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLK 437

[Close]

BLAST of Sed0011426.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.1e-52
Identity = 134/414 (32.37%), Postives = 209/414 (50.48%), Query Frame = 0


Query: 14  LHTQVSSTEWIVDSGASDHMTGDKTLFTTYTLHKGDI-YVRIADGSPTKVIGVGNI---- 73
           +H     +EW+VD+ AS H T  + LF  Y    GD   V++ + S +K+ G+G+I    
Sbjct: 285 MHLSGPESEWVVDTAASHHATPVRDLFCRYV--AGDFGTVKMGNTSYSKIAGIGDICIKT 344

Query: 74  QVSESLLLQSVFFVPKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCG 133
            V  +L+L+ V  VP L  NL+S   L++D   E+ F AN       GS  VI +    G
Sbjct: 345 NVGCTLVLKDVRHVPDLRMNLISGIALDRD-GYESYF-ANQKWRLTKGS-LVIAKGVARG 404

Query: 134 GLYLLHVTSPLNKPVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPS 193
            LY                N   C     L+ +  +  V  WH R+GH +   L+ L   
Sbjct: 405 TLY--------------RTNAEIC--QGELNAAQDEISVDLWHKRMGHMSEKGLQILAKK 464

Query: 194 LFIH--KKSKFFQCEICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWF 253
             I   K +    C+ C   K  R S+            L++ D+ GP  + ++ G ++F
Sbjct: 465 SLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYF 524

Query: 254 LLFVDDHTRLSWTFLMKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEY 313
           + F+DD +R  W +++K K +   +F+ FH +++ +    +K L+++N  ++ +    EY
Sbjct: 525 VTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEY 584

Query: 314 LQTHGIVHQSSYVYTPQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINR 373
             +HGI H+ +   TPQ NGV ER NR +++  RS++  + +PKSFWGEA+  A YLINR
Sbjct: 585 CSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINR 644

Query: 374 MPSRILKFQTPLHTLLSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSI 421
            PS  L F+ P         T+  VS+   K+FGC AF HV  + R+KLD +SI
Sbjct: 645 SPSVPLAFEIPERVW-----TNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSI 672

[Close]

BLAST of Sed0011426.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.7e-50
Identity = 121/415 (29.16%), Postives = 213/415 (51.33%), Query Frame = 0


Query: 11  DFALHTQVSSTEWIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQV 70
           + A+++  ++  W++DSGA+ H+T D    + +  + G   V IADGS   +   G+  +
Sbjct: 298 NLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASL 357

Query: 71  ---SESLLLQSVFFVPKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELC 130
              S SL L  V +VP +  NL+SV RL         F   S   +DL +   + + +  
Sbjct: 358 PTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTK 417

Query: 131 GGLYLLHVTSPLNKPVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFP 190
             LY   + S      +QA    + F S     ++S     SWH RLGHP+ A L  +  
Sbjct: 418 DELYEWPIAS------SQA---VSMFASPCSKATHS-----SWHSRLGHPSLAILNSVIS 477

Query: 191 S---LFIHKKSKFFQCEICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGAR 250
           +     ++   K   C  C ++K  +  +       S+P   I+ D+W  S + ++   R
Sbjct: 478 NHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYR 537

Query: 251 WFLLFVDDHTRLSWTFLMKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLG 310
           ++++FVD  TR +W + +K K +    F +F  +++N+F T +  L ++N  +F    L 
Sbjct: 538 YYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLR 597

Query: 311 EYLQTHGIVHQSSYVYTPQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLI 370
           +YL  HGI H +S  +TP+ NG+ ERK+RH++++  +++  ++VPK++W  A   A+YLI
Sbjct: 598 DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLI 657

Query: 371 NRMPSRILKFQTPLHTLLSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARS 420
           NR+P+ +L+ Q+P   L    P     ++   K+FGC  +  +   +R KL+ +S
Sbjct: 658 NRLPTPLLQLQSPFQKLFGQPP-----NYEKLKVFGCACYPWLRPYNRHKLEDKS 690

[Close]

BLAST of Sed0011426.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-49
Identity = 117/415 (28.19%), Postives = 209/415 (50.36%), Query Frame = 0


Query: 11  DFALHTQVSSTEWIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQV 70
           + AL +  SS  W++DSGA+ H+T D    + +  + G   V +ADGS   +   G+  +
Sbjct: 319 NLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSL 378

Query: 71  ---SESLLLQSVFFVPKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELC 130
              S  L L ++ +VP +  NL+SV RL         F   S   +DL +   + + +  
Sbjct: 379 STKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTK 438

Query: 131 GGLYLLHVTSPLNKPVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFP 190
             LY   + S  ++PV       + F S S   ++S     SWH RLGHP  + L  +  
Sbjct: 439 DELYEWPIAS--SQPV-------SLFASPSSKATHS-----SWHARLGHPAPSILNSVIS 498

Query: 191 SL---FIHKKSKFFQCEICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGAR 250
           +     ++   KF  C  C ++K  +  +       ++P   I+ D+W  S + +    R
Sbjct: 499 NYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYR 558

Query: 251 WFLLFVDDHTRLSWTFLMKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLG 310
           ++++FVD  TR +W + +K K +    F  F  +++N+F T +    ++N  +F    L 
Sbjct: 559 YYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFV--ALW 618

Query: 311 EYLQTHGIVHQSSYVYTPQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLI 370
           EY   HGI H +S  +TP+ NG+ ERK+RH+++   +++  +++PK++W  A   A+YLI
Sbjct: 619 EYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLI 678

Query: 371 NRMPSRILKFQTPLHTLLSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARS 420
           NR+P+ +L+ ++P   L    P     ++   ++FGC  +  +   ++ KLD +S
Sbjct: 679 NRLPTPLLQLESPFQKLFGTSP-----NYDKLRVFGCACYPWLRPYNQHKLDDKS 711

[Close]

BLAST of Sed0011426.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 8.3e-33
Identity = 115/420 (27.38%), Postives = 196/420 (46.67%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSP---TKVIGVGNIQVSESLLLQSV 82
           +++DSGASDH+  D++L+T        + + +A           G+  ++    + L+ V
Sbjct: 289 FVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDV 348

Query: 83  FFVPKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVTSPL 142
            F  +   NL+SV RL +           S  F   G    I +     GL ++  +  L
Sbjct: 349 LFCKEAAGNLMSVKRLQE--------AGMSIEFDKSG--VTISK----NGLMVVKNSGML 408

Query: 143 NK-PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKF- 202
           N  PV         F + S++  + +N  + WH R GH +   L      L I +K+ F 
Sbjct: 409 NNVPVIN-------FQAYSINAKHKNNFRL-WHERFGHISDGKL------LEIKRKNMFS 468

Query: 203 ---------FQCEICQLSKHTRTSYLPQPYIP-----SQPFSLIHGDIWGPSRVNNVSGA 262
                      CEIC+   + + + LP   +       +P  ++H D+ GP     +   
Sbjct: 469 DQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDK 528

Query: 263 RWFLLFVDDHTRLSWTFLMKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNL 322
            +F++FVD  T    T+L+K K +   +F+ F    +  F+  V  L  +N R++ ++ +
Sbjct: 529 NYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEM 588

Query: 323 GEYLQTHGIVHQSSYVYTPQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYL 382
            ++    GI +  +  +TPQ NGV ER  R + + AR+++  + + KSFWGEA+L A YL
Sbjct: 589 RQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYL 648

Query: 383 INRMPSRIL--KFQTPLHTLLSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           INR+PSR L    +TP       H     + HL  ++FG   +VH+ ++ + K D +S K
Sbjct: 649 INRIPSRALVDSSKTPYEMW---HNKKPYLKHL--RVFGATVYVHIKNK-QGKFDDKSFK 674

[Close]

BLAST of Sed0011426.1 vs. ExPASy Swiss-Prot
Match: Q12501 (Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-OR2 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-17
Identity = 83/366 (22.68%), Postives = 150/366 (40.98%), Query Frame = 0


Query: 24  IVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQV---SESLLLQSVF 83
           ++DSGAS  +      +  +     +I +  A      +  +GN+     + +       
Sbjct: 455 LIDSGASQTLV-RSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKAL 514

Query: 84  FVPKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVTSPLN 143
             P + Y+LLS+S L    N    F  N+    +     V+      G  Y L     + 
Sbjct: 515 HTPNIAYDLLSLSELTNQ-NITACFTRNTL---ERSDGTVLAPIVKHGDFYWLSKKYLIP 574

Query: 144 KPVNQARNESACFVSNSLDLSNSDNL--VMSWHYRLGHPNFAYLER---------LFPSL 203
             +++          N+++ S S N       H  LGH NF  +++         L  S 
Sbjct: 575 SHISK-------LTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESD 634

Query: 204 FIHKKSKFFQCEICQLSKHTRTSYLPQPYIPSQ----PFSLIHGDIWGPSRVNNVSGARW 263
                +  +QC  C + K T+  ++    +  Q    PF  +H DI+GP      S   +
Sbjct: 635 IEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSY 694

Query: 264 FLLFVDDHTRLSWTFLMKDKGETS--HLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNL 323
           F+ F D+ TR  W + + D+ E S  ++F      I+NQF+  V +++ +   ++ N  L
Sbjct: 695 FISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTL 754

Query: 324 GEYLQTHGIVHQSSYVYTPQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYL 370
            ++    GI    +     + +GV ER NR LL+  R+++  S +P   W  A+  +  +
Sbjct: 755 HKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTII 808

[Close]

BLAST of Sed0011426.1 vs. ExPASy TrEMBL
Match: A0A438F419 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3229 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 8.1e-132
Identity = 235/399 (58.90%), Postives = 291/399 (72.93%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRIADGS +KV G G++ +S  L L SV  V
Sbjct: 67  WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNSVLLV 126

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVTSPLNKP 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L       K 
Sbjct: 127 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYIL-------KE 186

Query: 143 VNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCEI 202
            +  + +  C  S S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  + F+CEI
Sbjct: 187 RHDPQEQPQC-NSFSVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPQSFECEI 246

Query: 203 CQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFLM 262
           CQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FLM
Sbjct: 247 CQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFLM 306

Query: 263 KDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYTP 322
           K+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V TP
Sbjct: 307 KEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDTP 366

Query: 323 QQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTLL 382
           QQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TLL
Sbjct: 367 QQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTLL 426

Query: 383 SIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
              PT+ L+S +P KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 427 KSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLK 456

[Close]

BLAST of Sed0011426.1 vs. ExPASy TrEMBL
Match: A5CA30 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_025054 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 3.1e-131
Identity = 233/400 (58.25%), Postives = 289/400 (72.25%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+ +  ++ VRIADGS +KV G G++ +S  L L SV  V
Sbjct: 493 WIVDSGASDHMTGDATIFDTYSSYPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNSVLLV 552

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L     P  +
Sbjct: 553 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYILKERHDPQEQ 612

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  + F+CE
Sbjct: 613 PQMTVGSNSF-----SVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPQSFECE 672

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 673 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFL 732

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V T
Sbjct: 733 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDT 792

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMP R+LKFQTP  TL
Sbjct: 793 PQQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPXRVLKFQTPCQTL 852

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +P KIFGC+ FVH++ QHRSK D RS+K
Sbjct: 853 LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKXDPRSLK 886

[Close]

BLAST of Sed0011426.1 vs. ExPASy TrEMBL
Match: A0A438HV58 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1797 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 3.1e-131
Identity = 235/400 (58.75%), Postives = 289/400 (72.25%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRIADGS +KV G G++ +S  L L SV  V
Sbjct: 82  WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNSVLLV 141

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L     P  +
Sbjct: 142 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYILKERHDPQEQ 201

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  K F+CE
Sbjct: 202 PQMTVGSNSF-----SVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPKSFECE 261

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 262 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFISFIDDHTRLTWVFL 321

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V T
Sbjct: 322 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDT 381

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TL
Sbjct: 382 PQQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTL 441

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +  KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 442 LKSFPTTRLISTVLPKIFGCSVFVHINQQHRSKLDPRSLK 475

[Close]

BLAST of Sed0011426.1 vs. ExPASy TrEMBL
Match: A5AYC4 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_029672 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 6.8e-131
Identity = 233/400 (58.25%), Postives = 288/400 (72.00%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRIADGS +KV G G++ +S  L L  V  V
Sbjct: 378 WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVLSRDLTLNFVLLV 437

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG AE C GLY+L     P  +
Sbjct: 438 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLYILKERHDPQEQ 497

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHYRLGHPN  YL+ LFPSLF +K  K F+CE
Sbjct: 498 PQMTVGSNSF-----SVSCQNNDSAIRLWHYRLGHPNVMYLKHLFPSLF-NKNPKSFECE 557

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 558 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFL 617

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   G+VH SS V T
Sbjct: 618 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGLVHLSSCVDT 677

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+V RS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TL
Sbjct: 678 PQQNGIAERKNRHLLEVVRSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTL 737

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +P KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 738 LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLK 771

[Close]

BLAST of Sed0011426.1 vs. ExPASy TrEMBL
Match: A0A438DTR6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1661 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 6.8e-131
Identity = 233/400 (58.25%), Postives = 287/400 (71.75%), Query Frame = 0


Query: 23  WIVDSGASDHMTGDKTLFTTYTLHKGDIYVRIADGSPTKVIGVGNIQVSESLLLQSVFFV 82
           WIVDSGASDHMTGD T+F TY+    ++ VRI DGS +KV G G++ +S  L L SV  V
Sbjct: 44  WIVDSGASDHMTGDATIFDTYSSCPNNLTVRIVDGSLSKVAGTGSVVLSRDLTLNSVLLV 103

Query: 83  PKLEYNLLSVSRLNKDLNCETNFCANSCIFQDLGSRKVIGRAELCGGLYLLHVT-SPLNK 142
           P L+ NLLS+S+L K+  C TNF +  C FQDL S K IG  E C GLY+L     P  +
Sbjct: 104 PNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNVEKCSGLYILKERHDPQEQ 163

Query: 143 PVNQARNESACFVSNSLDLSNSDNLVMSWHYRLGHPNFAYLERLFPSLFIHKKSKFFQCE 202
           P     + S      S+   N+D+ +  WHY LGHPN  YL+ LFPSLF +K  K F+CE
Sbjct: 164 PQMTVGSNSF-----SVSCQNNDSAIKLWHYHLGHPNVMYLKHLFPSLF-NKNPKSFECE 223

Query: 203 ICQLSKHTRTSYLPQPYIPSQPFSLIHGDIWGPSRVNNVSGARWFLLFVDDHTRLSWTFL 262
           ICQLSK  R+ +  QPY  S PFS+IH DIWGPSR+ NV+G RWF+ F+DDHTRL+W FL
Sbjct: 224 ICQLSKQVRSHFPIQPYKESSPFSMIHSDIWGPSRIKNVTGTRWFVSFIDDHTRLTWVFL 283

Query: 263 MKDKGETSHLFKVFHKMIQNQFSTNVKILKTNNARDFFNSNLGEYLQTHGIVHQSSYVYT 322
           MK+K ETS +FK F  MIQ QF + ++ILK++NARD+FNS LGE+L   GIVH SS V T
Sbjct: 284 MKEKSETSQIFKNFKNMIQTQFQSKIQILKSDNARDYFNSILGEFLAQEGIVHLSSCVDT 343

Query: 323 PQQNGVVERKNRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTL 382
           PQQNG+ ERKNRHLL+VARS+M + NVPK FWG+A+L A YLINRMPSR+LKFQTP  TL
Sbjct: 344 PQQNGIAERKNRHLLEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRVLKFQTPCQTL 403

Query: 383 LSIHPTSHLVSHLPFKIFGCNAFVHVHSQHRSKLDARSIK 422
           L   PT+ L+S +P KIFGC+ FVH++ QHRSKLD RS+K
Sbjct: 404 LKSFPTTRLISTVPPKIFGCSVFVHINQQHRSKLDPRSLK 437

[Close]

BLAST of Sed0011426.1 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.2e-04
Identity = 24/75 (32.00%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 332 NRHLLDVARSIMLTSNVPKSFWGEAILAAIYLINRMPSRILKFQTPLHTLLSIHPTSHLV 391
           NR +++  RS++    +PK+F  +A   A+++IN+ PS  + F  P        PT    
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPT---Y 61

Query: 392 SHLPFKIFGCNAFVH 407
           S+L  + FGC A++H
Sbjct: 62  SYL--RRFGCVAYIH 71

The following BLAST results are available for this feature:

BLAST of Sed0011426.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW54646.1	1.7e-131	58.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN75466.1	2.2e-131	58.25	hypothetical protein VITISV_025054 [Vitis vinifera]	[more]
RVW88342.1	6.3e-131	58.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN80566.1	1.4e-130	58.25	hypothetical protein VITISV_029672 [Vitis vinifera]	[more]
RVW38886.1	1.4e-130	58.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Sed0011426.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.1e-52	32.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	5.7e-50	29.16	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.3e-49	28.19	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	8.3e-33	27.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12501	3.7e-17	22.68	Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Sed0011426.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438F419	8.1e-132	58.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5CA30	3.1e-131	58.25	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438HV58	3.1e-131	58.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5AYC4	6.8e-131	58.25	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438DTR6	6.8e-131	58.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Sed0011426.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	2.2e-04	32.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 221..322 e-value: 2.1E-9 score: 37.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 219..385 score: 20.202726
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 214..398 e-value: 3.6E-35 score: 123.1
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 129..208 e-value: 4.1E-18 score: 65.0
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 129..415
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 129..415
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 217..379

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0011426	Sed0011426	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011426.1-exon	Sed0011426.1-exon-LG11:16852765..16854547	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011426.1-cds	Sed0011426.1-cds-LG11:16852765..16854030	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011426.1-five_prime_utr	Sed0011426.1-five_prime_utr-LG11:16854031..16854547	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0011426.1	Sed0011426.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity