Sed0027888 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCATCCTTCAATTTCATTTTCTTTATAACATCCAATTTGCCAGAAATTTAAAAAACAAAAAAAAAAATGAAAAGAGAAGGCCGGCAACACGGCATGGTCCGAACCTACCGGATCCTCCCGTCACCGGTCAATAACGGGTTCATCAACGGCTACGATTCCCCGCCGACTGCTGGATTGTTCACCAAAGCCCCATCCGAACCTACCAACCACTCCAAGTTTACCGGTAAGTGCGGTCGCCCCCGGTGCTCCGGTTGCCGCATGCATCCGGTTTGCAAGGCTAAGAACAAAACCAAAGGTAAATTCTAATTTCTTTTTTATGATATAGTTTTTGTGAATATATTTTCAATTTGGTGCCCTAATTTTGGCTGGTTTTGATATAATCTCTCGGTGTGTTTGGGCCCATTTTTATAAACGGTCCAGTTGGTTATAATAACCCAACGATAGATGTTTCCCCACCGTTTATGATAAACGGTGGGTCAAACGTACTTGCTTATTTATCTAAACCTAAGGACATGTTTATCTAAAATTTACCAATATTACTTTTTGTTATTTAATCACTATTTTTCATAATCCATATTATTATAACTTCCCTTCAAACATTATTTATAATAATTCACCGTTTATCATAACCGTTTGCCTATCATAATCAAATTGGTGTTCCAAACATGCCCTATCATTTTGTGGGAAATTATTAGTCCAATTTTATAGTGTGTTTTTTTTCTGAAATAAAAATTAGACAAAATTTAGTTCTCAAAGTTAAAATTTCGTGGATCTACTAAACATTCAATTTTATAATTTTCTAATCATAGAGATAATTTTGTAACTTGTAAATTATATGGATTGAATTCTAAATTTCTTCCATTGATAATTGATAAGATTAAATTCTAAAGTTAAAATTAATATTTTTGTCTCATTATTTAGATTTTTCCTTTTCTTTTATCTCTAAACTTTTGAGATTTTTCTATCTCAAAGAAAGATCAAAATGGTTTATAAATTTGAAATTAATATTAATTGAATTTGGTTAACTCATATTAATATTAATAATTTTAATTAGGATAAAATCTTAACATAATTCTAAGACAAATTAAAAAATTCTGCTTATTGTTACTTCAACTTTCTGATAAATAAGAGATCAATTAGTTCAAGTTTCTTGCCCTCTACCATAATAATTGGGAATGAGATATTTAAATTTATATTTATTCATTAATCATATTAATATTGTCTGAGTTATTGCTCTAGTAACCACTATTTTGTAAGGCACTAAGAAATTAACATTTAAAAAAGAAAAAACAACACTATATATGTATAGGAAAAGAAAATAATGACACAACATAGTCACACGAGATTGGATGTTCAAAGTTTTCAAAATATAATAATTTTTGAATTTGAAATAAAATTGAAAATTATAGTATATTTAACCATTTGTTCATATGTTCTAACAAAAGGCACACACAAGCTTCGATCGGGCGATGTCAATGTCAATTGTCGACTAGTAAGTTGGCGAGTTGTGGATTCGAACCCGTTGCTCGGGTTGAATCTATTCGACATGTCGGCTTTGGGGATCGTGGATCACCTGTGGGAAGACTATGGGGATGAACATGATGATAACCATTGTGATTTGGAAGATAATTTGGAGATCAAGAATCTTGAAGGAAATGGTGTTCAATCAAGTGGTGATGATGATATGGATTTCTGCCATGTGGAACTTGTTATGGACCCTGCTGTAGAGGATGACCAAGAATGGTGCTTAGTGGGTGAAATGTAA TCATCCTTCAATTTCATTTTCTTTATAACATCCAATTTGCCAGAAATTTAAAAAACAAAAAAAAAAATGAAAAGAGAAGGCCGGCAACACGGCATGGTCCGAACCTACCGGATCCTCCCGTCACCGGTCAATAACGGGTTCATCAACGGCTACGATTCCCCGCCGACTGCTGGATTGTTCACCAAAGCCCCATCCGAACCTACCAACCACTCCAAGTTTACCGGTAAGTGCGGTCGCCCCCGGTGCTCCGGTTGCCGCATGCATCCGGTTTGCAAGGCTAAGAACAAAACCAAAGGCACACACAAGCTTCGATCGGGCGATGTCAATGTCAATTGTCGACTAGTAAGTTGGCGAGTTGTGGATTCGAACCCGTTGCTCGGGTTGAATCTATTCGACATGTCGGCTTTGGGGATCGTGGATCACCTGTGGGAAGACTATGGGGATGAACATGATGATAACCATTGTGATTTGGAAGATAATTTGGAGATCAAGAATCTTGAAGGAAATGGTGTTCAATCAAGTGGTGATGATGATATGGATTTCTGCCATGTGGAACTTGTTATGGACCCTGCTGTAGAGGATGACCAAGAATGGTGCTTAGTGGGTGAAATGTAA ATGAAAAGAGAAGGCCGGCAACACGGCATGGTCCGAACCTACCGGATCCTCCCGTCACCGGTCAATAACGGGTTCATCAACGGCTACGATTCCCCGCCGACTGCTGGATTGTTCACCAAAGCCCCATCCGAACCTACCAACCACTCCAAGTTTACCGGTAAGTGCGGTCGCCCCCGGTGCTCCGGTTGCCGCATGCATCCGGTTTGCAAGGCTAAGAACAAAACCAAAGGCACACACAAGCTTCGATCGGGCGATGTCAATGTCAATTGTCGACTAGTAAGTTGGCGAGTTGTGGATTCGAACCCGTTGCTCGGGTTGAATCTATTCGACATGTCGGCTTTGGGGATCGTGGATCACCTGTGGGAAGACTATGGGGATGAACATGATGATAACCATTGTGATTTGGAAGATAATTTGGAGATCAAGAATCTTGAAGGAAATGGTGTTCAATCAAGTGGTGATGATGATATGGATTTCTGCCATGTGGAACTTGTTATGGACCCTGCTGTAGAGGATGACCAAGAATGGTGCTTAGTGGGTGAAATGTAA MKREGRQHGMVRTYRILPSPVNNGFINGYDSPPTAGLFTKAPSEPTNHSKFTGKCGRPRCSGCRMHPVCKAKNKTKGTHKLRSGDVNVNCRLVSWRVVDSNPLLGLNLFDMSALGIVDHLWEDYGDEHDDNHCDLEDNLEIKNLEGNGVQSSGDDDMDFCHVELVMDPAVEDDQEWCLVGEM Homology
BLAST of Sed0027888 vs. NCBI nr
Match: XP_030956122.1 (uncharacterized protein LOC115978242 [Quercus lobata] >XP_030956124.1 uncharacterized protein LOC115978243 [Quercus lobata]) HSP 1 Score: 203.4 bits (516), Expect = 1.7e-48 Identity = 110/208 (52.88%), Postives = 130/208 (62.50%), Query Frame = 0
BLAST of Sed0027888 vs. NCBI nr
Match: KAF3957464.1 (hypothetical protein CMV_017528 [Castanea mollissima]) HSP 1 Score: 199.5 bits (506), Expect = 2.5e-47 Identity = 108/208 (51.92%), Postives = 132/208 (63.46%), Query Frame = 0
BLAST of Sed0027888 vs. NCBI nr
Match: KAF3444518.1 (hypothetical protein FNV43_RR14210 [Rhamnella rubrinervis]) HSP 1 Score: 196.4 bits (498), Expect = 2.1e-46 Identity = 107/212 (50.47%), Postives = 130/212 (61.32%), Query Frame = 0
BLAST of Sed0027888 vs. NCBI nr
Match: XP_041006436.1 (uncharacterized protein LOC121251158 [Juglans microcarpa x Juglans regia]) HSP 1 Score: 195.7 bits (496), Expect = 3.5e-46 Identity = 110/201 (54.73%), Postives = 130/201 (64.68%), Query Frame = 0
BLAST of Sed0027888 vs. NCBI nr
Match: XP_002526938.1 (uncharacterized protein LOC8260322 [Ricinus communis] >EEF35425.1 hypothetical protein RCOM_0530890 [Ricinus communis]) HSP 1 Score: 194.9 bits (494), Expect = 6.1e-46 Identity = 104/186 (55.91%), Postives = 125/186 (67.20%), Query Frame = 0
BLAST of Sed0027888 vs. ExPASy TrEMBL
Match: A0A7N2KZQ0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 8.2e-49 Identity = 110/208 (52.88%), Postives = 130/208 (62.50%), Query Frame = 0
BLAST of Sed0027888 vs. ExPASy TrEMBL
Match: B9SLR9 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0530890 PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 2.9e-46 Identity = 104/186 (55.91%), Postives = 125/186 (67.20%), Query Frame = 0
BLAST of Sed0027888 vs. ExPASy TrEMBL
Match: W9S8I3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017676 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 5.0e-46 Identity = 109/205 (53.17%), Postives = 134/205 (65.37%), Query Frame = 0
BLAST of Sed0027888 vs. ExPASy TrEMBL
Match: A0A067LND4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10195 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 6.5e-46 Identity = 107/205 (52.20%), Postives = 131/205 (63.90%), Query Frame = 0
BLAST of Sed0027888 vs. ExPASy TrEMBL
Match: A0A2N9F7S7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10696 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45 Identity = 111/211 (52.61%), Postives = 130/211 (61.61%), Query Frame = 0
BLAST of Sed0027888 vs. TAIR 10
Match: AT5G40690.1 (CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 159.5 bits (402), Expect = 2.6e-39 Identity = 96/210 (45.71%), Postives = 125/210 (59.52%), Query Frame = 0
BLAST of Sed0027888 vs. TAIR 10
Match: AT2G41730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24640.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13 Identity = 52/130 (40.00%), Postives = 66/130 (50.77%), Query Frame = 0
BLAST of Sed0027888 vs. TAIR 10
Match: AT5G24640.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12 Identity = 48/129 (37.21%), Postives = 63/129 (48.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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