Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTTCTTCATATGGAGACAATTCTGGTCTTTCTTTATCAAACCAGAATATACAAAATCGATCAATCCTGGGAACAAGGTTTCAAGTTCTTGCAGCACTCGAAGGACATGGTCTTGAAAGCTATGTCGATGAGGATTCTAAATCACCACCAAAGACAAGACGAATTACAAAAGGAGAAACATCAAGAGAAGAGATAAATCCTGACTGCACTCCATGGAAAAGGCAAGATCATCTTATTACTTCTTGGCTACTCGGCTCGATGTTAGAGGAGATTCTTTCTTAAATGCTTCATTGCACAACTGTAAAGGAAATATGGATCAATTTGCAACAAATGTTCTCTACTAGAAATTTGGCAAAGGTCGTGGAAATAAAAACTAAACTTCAGAACTTACGAAAAGGTAATCTTTCTCTGAAAGACTACCTTCGACAGGTAAAAAAATGGTGTATTCATTGACTGCTGCAAGAAAATATGTCCCAATTGAAGACCATATCATGCATATTCTATCTGGTCTTAGTCCAGATTTTGAATCCATCATCTTTGTTATTTCCTCCATCAAAGCACATTTATCAATACAAGTGAAAATGTGCATTAAAATGGCAAAATATGTCGGTTTTAGGTCATAATTAGTATGAATAGTGTTCAAGTCAAAATTCTTAGCTAAATATCCTTAGTCTTGAGAACTTTGGCCAAAAATAGCATAAACTCTCATATTCGTAGTTCATTTGCACAGGTTTTTAAAGAGGAGCTAAGAAGAGAACGAAGTGCTGAACCAGAGCAGAGAAGTCAAGACATTTTCAAGACAGACCATATAAATGTTGGAGCATTGCAATGCCAGAGCATGAGTGTCCGTACAGTTAATTCAAAAACATGGGATTCACTTTATGTCTATACAATCTCCAGTCGGGGAGATTTACATGCTGCAACTGACTTGAGACCGAACCTCTAG
mRNA sequence
ATGGCCTCTTCTTCATATGGAGACAATTCTGGTCTTTCTTTATCAAACCAGAATATACAAAATCGATCAATCCTGGGAACAAGGTTTCAAGTTCTTGCAGCACTCGAAGGACATGGTCTTGAAAGCTATGTCGATGAGGATTCTAAATCACCACCAAAGACAAGACGAATTACAAAAGGAGAAACATCAAGAGAAGAGATAAATCCTGACTGCACTCCATGGAAAAGGCAAGATCATCTTATTACTTCTTGGCTACTCGGCTCGATAAATTTGGCAAAGGTCGTGGAAATAAAAACTAAACTTCAGAACTTACGAAAAGGTAATCTTTCTCTGAAAGACTACCTTCGACAGGTTTTTAAAGAGGAGCTAAGAAGAGAACGAAGTGCTGAACCAGAGCAGAGAAGTCAAGACATTTTCAAGACAGACCATATAAATGTTGGAGCATTGCAATGCCAGAGCATGAGTGTCCGTACAGTTAATTCAAAAACATGGGATTCACTTTATGTCTATACAATCTCCAGTCGGGGAGATTTACATGCTGCAACTGACTTGAGACCGAACCTCTAG
Coding sequence (CDS)
ATGGCCTCTTCTTCATATGGAGACAATTCTGGTCTTTCTTTATCAAACCAGAATATACAAAATCGATCAATCCTGGGAACAAGGTTTCAAGTTCTTGCAGCACTCGAAGGACATGGTCTTGAAAGCTATGTCGATGAGGATTCTAAATCACCACCAAAGACAAGACGAATTACAAAAGGAGAAACATCAAGAGAAGAGATAAATCCTGACTGCACTCCATGGAAAAGGCAAGATCATCTTATTACTTCTTGGCTACTCGGCTCGATAAATTTGGCAAAGGTCGTGGAAATAAAAACTAAACTTCAGAACTTACGAAAAGGTAATCTTTCTCTGAAAGACTACCTTCGACAGGTTTTTAAAGAGGAGCTAAGAAGAGAACGAAGTGCTGAACCAGAGCAGAGAAGTCAAGACATTTTCAAGACAGACCATATAAATGTTGGAGCATTGCAATGCCAGAGCATGAGTGTCCGTACAGTTAATTCAAAAACATGGGATTCACTTTATGTCTATACAATCTCCAGTCGGGGAGATTTACATGCTGCAACTGACTTGAGACCGAACCTCTAG
Protein sequence
MASSSYGDNSGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEINPDCTPWKRQDHLITSWLLGSINLAKVVEIKTKLQNLRKGNLSLKDYLRQVFKEELRRERSAEPEQRSQDIFKTDHINVGALQCQSMSVRTVNSKTWDSLYVYTISSRGDLHAATDLRPNL
Homology
BLAST of Moc09g08120 vs. NCBI nr
Match:
XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])
HSP 1 Score: 80.5 bits (197), Expect = 1.7e-11
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 0
Query: 9 NSGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEI- 68
N G +S + + + L +FQ+ AL+G+GLESY+D + +P + + T+ E+S +
Sbjct: 23 NPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDESSSSSLQ 82
Query: 69 -NPDCTPWKRQDHLITSWLLGSIN----------------------------LAKVVEIK 119
NP W +QD LI++WLLGS+N LA+V+++K
Sbjct: 83 QNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLARVMQLK 142
BLAST of Moc09g08120 vs. NCBI nr
Match:
XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])
HSP 1 Score: 76.6 bits (187), Expect = 2.5e-10
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 0
Query: 28 RFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETS--REEINPDCTPWKRQDHLITSWL 87
+FQVL A++GHGLE Y+D D + P + + G TS ++ NP+ W +QD LI+ WL
Sbjct: 19 KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78
Query: 88 LGSI----------------------------NLAKVVEIKTKLQNLRKGNLSLKDYLRQ 119
LGS+ NLA+V+++K+KL+N++KG+++LK+Y +
Sbjct: 79 LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138
BLAST of Moc09g08120 vs. NCBI nr
Match:
RVW31306.1 (hypothetical protein CK203_112141 [Vitis vinifera])
HSP 1 Score: 72.4 bits (176), Expect = 4.7e-09
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 0
Query: 30 QVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEINPDCTPWKRQDHLITSWLLGSI 89
QV A+ GH L+ ++ ++ P K +T G+ + +INP+C W++QD L SWLL S+
Sbjct: 28 QVGVAIRGHKLQKFILKNENQPEKF--LTTGDHVQGKINPECLDWEQQDQLFFSWLLSSM 87
Query: 90 NLAKVVEI-KTKLQNLRKGNLSLKDYLRQV 119
+ + KTKLQN++K +LS+KDYL ++
Sbjct: 88 TKVMLTRMFKTKLQNIKKDDLSVKDYLLKI 115
BLAST of Moc09g08120 vs. NCBI nr
Match:
GAY68041.1 (hypothetical protein CUMW_261070, partial [Citrus unshiu])
HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0
Query: 30 QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
Q+L+++ +GLESY+DE P + R GE E+ NPD WKRQD L+ SW++
Sbjct: 211 QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 270
Query: 90 GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
S++ L+ VV +K L NLRKG+LS+ +Y ++
Sbjct: 271 SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 305
BLAST of Moc09g08120 vs. NCBI nr
Match:
GAY68044.1 (hypothetical protein CUMW_261070, partial [Citrus unshiu])
HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0
Query: 30 QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
Q+L+++ +GLESY+DE P + R GE E+ NPD WKRQD L+ SW++
Sbjct: 37 QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 96
Query: 90 GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
S++ L+ VV +K L NLRKG+LS+ +Y ++
Sbjct: 97 SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 131
BLAST of Moc09g08120 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 37/138 (26.81%), Postives = 62/138 (44.93%), Query Frame = 0
Query: 13 SLSNQNIQN-RSILGTRF-----QVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREE 72
S+ N N+ N + T + QV A +G+ L ++D + PP T G +
Sbjct: 14 SILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPP----ATIGTDAAPR 73
Query: 73 INPDCTPWKRQDHLITSWLLGSINLA----------------------------KVVEIK 117
+NPD T WKRQD LI S +LG+I+++ V +++
Sbjct: 74 VNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 133
BLAST of Moc09g08120 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 46.2 bits (108), Expect = 4.7e-04
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0
Query: 30 QVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEINPDCTPWKRQDHLITSWLLGSI 89
QV A +G+ L ++D + PP T G + +NPD T W+RQD LI S +LG+I
Sbjct: 37 QVHALFDGYELAGFLDGSTPMPP----ATIGTDAVPRVNPDYTRWRRQDKLIYSAILGAI 95
Query: 90 NLA 93
+++
Sbjct: 97 SMS 95
BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match:
A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 8.3e-12
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 0
Query: 9 NSGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSREEI- 68
N G +S + + + L +FQ+ AL+G+GLESY+D + +P + + T+ E+S +
Sbjct: 23 NPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDESSSSSLQ 82
Query: 69 -NPDCTPWKRQDHLITSWLLGSIN----------------------------LAKVVEIK 119
NP W +QD LI++WLLGS+N LA+V+++K
Sbjct: 83 QNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLARVMQLK 142
BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match:
A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 42/121 (34.71%), Postives = 69/121 (57.02%), Query Frame = 0
Query: 28 RFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETS--REEINPDCTPWKRQDHLITSWL 87
+FQVL A++GHGLE Y+D D + P + + G TS ++ NP+ W +QD LI+ WL
Sbjct: 19 KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78
Query: 88 LGSI----------------------------NLAKVVEIKTKLQNLRKGNLSLKDYLRQ 119
LGS+ NLA+V+++K+KL+N++KG+++LK+Y +
Sbjct: 79 LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138
BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match:
A0A2H5QTU2 (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 8.6e-09
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0
Query: 30 QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
Q+L+++ +GLESY+DE P + R GE E+ NPD WKRQD L+ SW++
Sbjct: 37 QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 96
Query: 90 GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
S++ L+ VV +K L NLRKG+LS+ +Y ++
Sbjct: 97 SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 131
BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match:
A0A2H5QTU0 (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 8.6e-09
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0
Query: 30 QVLAALEGHGLESYVDEDSKSPPK--TRRITKGETSREE-INPDCTPWKRQDHLITSWLL 89
Q+L+++ +GLESY+DE P + R GE E+ NPD WKRQD L+ SW++
Sbjct: 211 QILSSIRRNGLESYIDESKPCPERFLLDRSGSGEACGEDRENPDFIAWKRQDQLLLSWIM 270
Query: 90 GSIN---LAKVVEIKTKLQNLRKGNLSLKDYLRQV 119
S++ L+ VV +K L NLRKG+LS+ +Y ++
Sbjct: 271 SSMSLEILSLVVHLKMLLSNLRKGSLSMTEYFTKL 305
BLAST of Moc09g08120 vs. ExPASy TrEMBL
Match:
A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 9.5e-08
Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 0
Query: 10 SGLSLSNQNIQNRSILGTRFQVLAALEGHGLESYVDEDSKSPPKTRRITKGETSRE--EI 69
SG +S + + + L +FQ+L ALE + LE++++ +S+ P K T+ ++
Sbjct: 25 SGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESSSASATGTP 84
Query: 70 NPDCTPWKRQDHLITSWLLGSIN----------------------------LAKVVEIKT 121
NP WKRQD LI+SWLLGS++ LA+ ++ K
Sbjct: 85 NPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQAMQFKN 144
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022154487.1 | 1.7e-11 | 34.29 | uncharacterized protein LOC111021757 [Momordica charantia] | [more] |
| XP_022156747.1 | 2.5e-10 | 34.71 | uncharacterized protein LOC111023586 [Momordica charantia] | [more] |
| RVW31306.1 | 4.7e-09 | 40.00 | hypothetical protein CK203_112141 [Vitis vinifera] | [more] |
| GAY68041.1 | 1.8e-08 | 41.05 | hypothetical protein CUMW_261070, partial [Citrus unshiu] | [more] |
| GAY68044.1 | 1.8e-08 | 41.05 | hypothetical protein CUMW_261070, partial [Citrus unshiu] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q94HW2 | 1.2e-04 | 26.81 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
| Q9ZT94 | 4.7e-04 | 38.10 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DLT9 | 8.3e-12 | 34.29 | uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
| A0A6J1DSS1 | 1.2e-10 | 34.71 | uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
| A0A2H5QTU2 | 8.6e-09 | 41.05 | Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4... | [more] |
| A0A2H5QTU0 | 8.6e-09 | 41.05 | Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_261070 PE=4... | [more] |
| A0A5A7U233 | 9.5e-08 | 29.79 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
