Lag0003131 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0003131
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRING-type E3 ubiquitin transferase
Locationchr4: 48347673 .. 48348170 (-)
RNA-Seq ExpressionLag0003131
SyntenyLag0003131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTAATCTTCATCTGCTCCGGCATTGCCATTATTTGCTCACTGATTATAGCCCTTACATTCTTCCATCTTACAATGGTAGGACGGTGTAATTGCGGTTGCCGTTCGACCCCGACGCCTGAGCCTGTCAAGAACATTAAACATGAAGCCTCAAATGTCATACAGATCTCAACTATTGCGTACAAGGAAAATGAGAATCAAGAAACTAATACTGAAACTGAGTGTGTTTTGTGTTTGTCACCTTTTGAAGACGGGGAATGCATACGAAAGCTTCCTGGCTGCAACCATGTCTTTCATGCTTCATGTATTGACGTATGGCTCTCTTCACATTCGAACTGCCCACTCTGCCGGAGTCCAGTCAACCATGTTGCTTGTAATAAAGGGGAGTCGACATCTGAGGCGGAGAATTCTCAGGTGGTAGCCATTAATAACAGTCTCCAAATTGAGCTTTCTCGTGTAAGTAGGAGGGAGGCTGGGCCAGAAAACATGGTTTAA

mRNA sequence

ATGTCTGTAATCTTCATCTGCTCCGGCATTGCCATTATTTGCTCACTGATTATAGCCCTTACATTCTTCCATCTTACAATGGTAGGACGGTGTAATTGCGGTTGCCGTTCGACCCCGACGCCTGAGCCTGTCAAGAACATTAAACATGAAGCCTCAAATGTCATACAGATCTCAACTATTGCGTACAAGGAAAATGAGAATCAAGAAACTAATACTGAAACTGAGTGTGTTTTGTGTTTGTCACCTTTTGAAGACGGGGAATGCATACGAAAGCTTCCTGGCTGCAACCATGTCTTTCATGCTTCATGTATTGACGTATGGCTCTCTTCACATTCGAACTGCCCACTCTGCCGGAGTCCAGTCAACCATGTTGCTTGTAATAAAGGGGAGTCGACATCTGAGGCGGAGAATTCTCAGGTGGTAGCCATTAATAACAGTCTCCAAATTGAGCTTTCTCGTGTAAGTAGGAGGGAGGCTGGGCCAGAAAACATGGTTTAA

Coding sequence (CDS)

ATGTCTGTAATCTTCATCTGCTCCGGCATTGCCATTATTTGCTCACTGATTATAGCCCTTACATTCTTCCATCTTACAATGGTAGGACGGTGTAATTGCGGTTGCCGTTCGACCCCGACGCCTGAGCCTGTCAAGAACATTAAACATGAAGCCTCAAATGTCATACAGATCTCAACTATTGCGTACAAGGAAAATGAGAATCAAGAAACTAATACTGAAACTGAGTGTGTTTTGTGTTTGTCACCTTTTGAAGACGGGGAATGCATACGAAAGCTTCCTGGCTGCAACCATGTCTTTCATGCTTCATGTATTGACGTATGGCTCTCTTCACATTCGAACTGCCCACTCTGCCGGAGTCCAGTCAACCATGTTGCTTGTAATAAAGGGGAGTCGACATCTGAGGCGGAGAATTCTCAGGTGGTAGCCATTAATAACAGTCTCCAAATTGAGCTTTCTCGTGTAAGTAGGAGGGAGGCTGGGCCAGAAAACATGGTTTAA

Protein sequence

MSVIFICSGIAIICSLIIALTFFHLTMVGRCNCGCRSTPTPEPVKNIKHEASNVIQISTIAYKENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCRSPVNHVACNKGESTSEAENSQVVAINNSLQIELSRVSRREAGPENMV
Homology
BLAST of Lag0003131 vs. NCBI nr
Match: KAG7013994.1 (E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 121/167 (72.46%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 1   MSVIFICSGIAIICSLIIALTFFHLTMVGRCNCGCRSTPTPEPVKNIKHEASNVIQISTI 60
           MSV FICSGIAIICSLII+LTFFHLT++G  NC C S  T E V+NIK+E S+++QI T+
Sbjct: 1   MSVFFICSGIAIICSLIISLTFFHLTILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTV 60

Query: 61  AY-KENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCRS 120
            Y KENEN+ETNTE+ECVLCLSPFEDGECIR+LP CNHVFHASCIDVWLSSHS CPLCR+
Sbjct: 61  TYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRT 120

Query: 121 PVNHVACNKGESTSEAENSQVVAINNSLQIELS-RVSRREAGPENMV 166
           PV+HVAC     T+EA   QVV I NSLQIELS  V R +A PENMV
Sbjct: 121 PVHHVACR----TAEAVICQVVDI-NSLQIELSPHVIRSKAWPENMV 162

BLAST of Lag0003131 vs. NCBI nr
Match: KAA0059407.1 (E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK03920.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 3.9e-52
Identity = 115/167 (68.86%), Postives = 131/167 (78.44%), Query Frame = 0

Query: 1   MSVIFICSGIAIICSLIIALTFFHLTMVGRCNCGCRSTPTPEPVKNIKHEASNVIQISTI 60
           MSV+FICSG+AI+CSL IAL FF+L M+G  NC CRS P    VKNIK+E SN+I+ISTI
Sbjct: 68  MSVLFICSGVAIVCSLFIALLFFNLAMLGWFNCCCRS-PEMTDVKNIKYEDSNLIKISTI 127

Query: 61  AY-KENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCRS 120
            Y KEN+++ETN  +EC LCLSP EDGECIRKL  CNHVFHASCIDVWL SHSNCPLCR+
Sbjct: 128 MYKKENKSEETNIPSECALCLSPCEDGECIRKLLACNHVFHASCIDVWLYSHSNCPLCRT 187

Query: 121 PVNHVACNKGESTSEAENSQVVAINNSLQIELS-RVSRREAGPENMV 166
            ++HVACN GE TS   NS VV INNSLQI LS   SRR +  ENMV
Sbjct: 188 TLDHVACNNGELTSGVVNSHVVVINNSLQIGLSLHESRRGSPSENMV 233

BLAST of Lag0003131 vs. NCBI nr
Match: KAE8646506.1 (hypothetical protein Csa_015876 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49
Identity = 114/168 (67.86%), Postives = 132/168 (78.57%), Query Frame = 0

Query: 1    MSVIFICSGIAIICSLIIALTFFHLTMV-GRCNCGCRSTPTPEPVKNIKHEASNVIQIST 60
            MSV+FICSGIAIICSL IAL FF+LTM+ G  NC CRS P    VKNIK+E SN+++IST
Sbjct: 914  MSVLFICSGIAIICSLSIALLFFNLTMILGWFNCCCRS-PEMTNVKNIKYEDSNLMKIST 973

Query: 61   IAY-KENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCR 120
            I Y KEN+++ETN  +EC LCLSP+EDGECIR+L  CNHVFHASCID+WL SHSNCPLCR
Sbjct: 974  IMYKKENKSEETNITSECALCLSPYEDGECIRELLACNHVFHASCIDIWLYSHSNCPLCR 1033

Query: 121  SPVNHVACNKGESTSEAENSQVVAINNSLQIELS-RVSRREAGPENMV 166
            +P+  VAC  GE TS      VVAI+NSLQIE S   S+REA PENMV
Sbjct: 1034 TPLGRVACINGELTS----GVVVAISNSLQIETSTHGSQREASPENMV 1076

BLAST of Lag0003131 vs. NCBI nr
Match: GAU28792.1 (hypothetical protein TSUD_357780 [Trifolium subterraneum])

HSP 1 Score: 104.8 bits (260), Expect = 7.5e-19
Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 0

Query: 4   IFICSGIAIICSLIIALTFFHLTMVGRCNCGCRSTPTPEPVKNIKHEASNVIQIS----T 63
           +++  GI II S++IA  FF LTM G CN        P  + +   + S  + +     T
Sbjct: 10  MYVLPGIIIIGSIVIAFIFFRLTMQGWCNLINHEPTLPTTIISYDEKFSGCMSLESHSIT 69

Query: 64  IAYKENE-NQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCR 123
             YKE +  Q+   +TECV+CL+ F++ E +RKL  C HVFH SCID WL SHS CPLCR
Sbjct: 70  FMYKEGDAAQQDINQTECVICLTVFQEDESVRKLHSCKHVFHTSCIDKWLGSHSGCPLCR 129

Query: 124 SPVNHVACNKGESTSEAENSQVVAINNS 147
           S ++ V      + S A +  +VAI +S
Sbjct: 130 SRIDQVT---SPNESLANDHMIVAIVDS 154

BLAST of Lag0003131 vs. NCBI nr
Match: XP_009590813.1 (RING-H2 finger protein ATL52-like [Nicotiana tomentosiformis])

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-18
Identity = 53/151 (35.10%), Postives = 88/151 (58.28%), Query Frame = 0

Query: 10  IAIICSLIIALTFFHLTMVGRCNCGCRSTPTPEP-VKNIKHEASNVIQISTIAYKE---- 69
           + I+   ++ L+ ++L +V  CN    +  + E     + H+  NVI  S+  YK+    
Sbjct: 82  LIIVGIAVVLLSLYNLLIVRWCNENHTNDQSLEQNSSQVSHDNLNVILESSFRYKKGGVE 141

Query: 70  ---NENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCRSPV 129
              N +++ N + EC +CLS FE+GE +++LP CNH FHASCID+WL SH +CP+CRSPV
Sbjct: 142 VGGNHHEKNNDDIECAVCLSDFEEGEEVKQLPRCNHSFHASCIDMWLYSHLDCPMCRSPV 201

Query: 130 NHVACNKGESTSEAENSQVVAINNSLQIELS 153
                ++   T + E+S+   +  ++Q  +S
Sbjct: 202 EQPVLHRSSFTGQEESSREGIVVQAIQFSVS 232

BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9LUZ9 (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 37  STPTPEPVKNIKHEASNVI-QISTIAYKENENQETNTETECVLCLSPFEDGECIRKLPGC 96
           S+P     ++ K   S+VI  I    Y+ENE +E + E ECV+CL  +E G+  RKL  C
Sbjct: 99  SSPAATATRDDKGLDSSVISSIPLFVYEENEEEE-DEEEECVICLGLWEAGDFGRKLRNC 158

Query: 97  NHVFHASCIDVWLSSHSNCPLCRSPV 122
            H FH  CID+WLSSHS CPLCRSPV
Sbjct: 159 GHGFHVECIDMWLSSHSTCPLCRSPV 183

BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 50/117 (42.74%), Postives = 63/117 (53.85%), Query Frame = 0

Query: 11  AIICSLIIALTFFHLTMVGRC--NCGCRSTPTPEPV-------KNIKHEASNVIQISTIA 70
           A++C+LI AL    +  V RC   C  R TP  +PV       K IK  A  VI +   +
Sbjct: 47  ALLCALICAL---GINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVD--S 106

Query: 71  YKENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCR 119
           Y      +    TEC++CL  F +GE +R LP CNH FH  CID WL SHS+CP CR
Sbjct: 107 YSPELKMKA---TECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCR 155

BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 52/132 (39.39%), Postives = 67/132 (50.76%), Query Frame = 0

Query: 11  AIICSLIIALTFFHLTMVGRCNCGCRST---PTPEPVKNIKHEASNVIQISTIAYKENEN 70
           A++C+LI       L  V RC    R T    +P P K +K +A   +  ST    E+ +
Sbjct: 34  ALLCALICVA---GLAAVVRCAWLRRFTAGGDSPSPNKGLKKKALQSLPRSTFTAAESTS 93

Query: 71  ---QETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCRSPVNHV 130
               E    TEC +CL+ F DGE IR LP C H FH  CID WL S S+CP CR  +  V
Sbjct: 94  GAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPV 153

Query: 131 ACNKGESTSEAE 137
            C++    S AE
Sbjct: 154 RCDRCGHASTAE 162

BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0

Query: 58  STIAYKENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLC 117
           S   YK  +       ++C +CLS F++ E +R LP CNH FH  CID WL SHSNCPLC
Sbjct: 141 SITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLC 200

Query: 118 RSPVNHVACNKGESTSEAENSQVVAINNSL 148
           R+    +  +      +  N Q+V  NNS+
Sbjct: 201 RA---FIVTSSAVEIVDLTNQQIVTENNSI 227

BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 40/89 (44.94%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 58  STIAYKENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLC 117
           S   YK          ++C +CLS FE+ E +R LP CNH FH  CID WL SHSNCPLC
Sbjct: 124 SITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLC 183

Query: 118 RSPVNHVACNKGESTSEAENSQVVAINNS 147
           R+ V  V      + S  +N  VV  N S
Sbjct: 184 RAFVTGV---NNPTASVGQNVSVVVANQS 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7013994.11.3e-5572.46E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyros... [more]
KAA0059407.13.9e-5268.86E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK03920.1 E3... [more]
KAE8646506.13.1e-4967.86hypothetical protein Csa_015876 [Cucumis sativus][more]
GAU28792.17.5e-1940.54hypothetical protein TSUD_357780 [Trifolium subterraneum][more]
XP_009590813.13.7e-1835.10RING-H2 finger protein ATL52-like [Nicotiana tomentosiformis][more]
Match NameE-valueIdentityDescription
Q9LUZ92.8e-1651.16RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1[more]
Q9FLC61.4e-1542.74RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1[more]
O227551.2e-1439.39Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT... [more]
Q9SRQ82.0e-1441.11RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2[more]
Q9LF643.4e-1444.94RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 76..117
e-value: 1.1E-4
score: 31.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 75..118
e-value: 6.9E-14
score: 51.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 76..118
score: 12.061441
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 36..124
e-value: 1.6E-21
score: 77.8
NoneNo IPR availablePANTHERPTHR45676:SF84RING-H2 FINGER PROTEIN ATL52-LIKEcoord: 9..139
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 75..118
e-value: 8.15271E-16
score: 65.4091
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 62..124
IPR044675E3 ubiquitin-protein ligase RING1-likePANTHERPTHR45676RING-H2 FINGER PROTEIN ATL51-RELATEDcoord: 9..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0003131.1Lag0003131.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0016020 membrane