Lag0003131 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGTAATCTTCATCTGCTCCGGCATTGCCATTATTTGCTCACTGATTATAGCCCTTACATTCTTCCATCTTACAATGGTAGGACGGTGTAATTGCGGTTGCCGTTCGACCCCGACGCCTGAGCCTGTCAAGAACATTAAACATGAAGCCTCAAATGTCATACAGATCTCAACTATTGCGTACAAGGAAAATGAGAATCAAGAAACTAATACTGAAACTGAGTGTGTTTTGTGTTTGTCACCTTTTGAAGACGGGGAATGCATACGAAAGCTTCCTGGCTGCAACCATGTCTTTCATGCTTCATGTATTGACGTATGGCTCTCTTCACATTCGAACTGCCCACTCTGCCGGAGTCCAGTCAACCATGTTGCTTGTAATAAAGGGGAGTCGACATCTGAGGCGGAGAATTCTCAGGTGGTAGCCATTAATAACAGTCTCCAAATTGAGCTTTCTCGTGTAAGTAGGAGGGAGGCTGGGCCAGAAAACATGGTTTAA ATGTCTGTAATCTTCATCTGCTCCGGCATTGCCATTATTTGCTCACTGATTATAGCCCTTACATTCTTCCATCTTACAATGGTAGGACGGTGTAATTGCGGTTGCCGTTCGACCCCGACGCCTGAGCCTGTCAAGAACATTAAACATGAAGCCTCAAATGTCATACAGATCTCAACTATTGCGTACAAGGAAAATGAGAATCAAGAAACTAATACTGAAACTGAGTGTGTTTTGTGTTTGTCACCTTTTGAAGACGGGGAATGCATACGAAAGCTTCCTGGCTGCAACCATGTCTTTCATGCTTCATGTATTGACGTATGGCTCTCTTCACATTCGAACTGCCCACTCTGCCGGAGTCCAGTCAACCATGTTGCTTGTAATAAAGGGGAGTCGACATCTGAGGCGGAGAATTCTCAGGTGGTAGCCATTAATAACAGTCTCCAAATTGAGCTTTCTCGTGTAAGTAGGAGGGAGGCTGGGCCAGAAAACATGGTTTAA ATGTCTGTAATCTTCATCTGCTCCGGCATTGCCATTATTTGCTCACTGATTATAGCCCTTACATTCTTCCATCTTACAATGGTAGGACGGTGTAATTGCGGTTGCCGTTCGACCCCGACGCCTGAGCCTGTCAAGAACATTAAACATGAAGCCTCAAATGTCATACAGATCTCAACTATTGCGTACAAGGAAAATGAGAATCAAGAAACTAATACTGAAACTGAGTGTGTTTTGTGTTTGTCACCTTTTGAAGACGGGGAATGCATACGAAAGCTTCCTGGCTGCAACCATGTCTTTCATGCTTCATGTATTGACGTATGGCTCTCTTCACATTCGAACTGCCCACTCTGCCGGAGTCCAGTCAACCATGTTGCTTGTAATAAAGGGGAGTCGACATCTGAGGCGGAGAATTCTCAGGTGGTAGCCATTAATAACAGTCTCCAAATTGAGCTTTCTCGTGTAAGTAGGAGGGAGGCTGGGCCAGAAAACATGGTTTAA MSVIFICSGIAIICSLIIALTFFHLTMVGRCNCGCRSTPTPEPVKNIKHEASNVIQISTIAYKENENQETNTETECVLCLSPFEDGECIRKLPGCNHVFHASCIDVWLSSHSNCPLCRSPVNHVACNKGESTSEAENSQVVAINNSLQIELSRVSRREAGPENMV Homology
BLAST of Lag0003131 vs. NCBI nr
Match: KAG7013994.1 (E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55 Identity = 121/167 (72.46%), Postives = 137/167 (82.04%), Query Frame = 0
BLAST of Lag0003131 vs. NCBI nr
Match: KAA0059407.1 (E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK03920.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa]) HSP 1 Score: 215.3 bits (547), Expect = 3.9e-52 Identity = 115/167 (68.86%), Postives = 131/167 (78.44%), Query Frame = 0
BLAST of Lag0003131 vs. NCBI nr
Match: KAE8646506.1 (hypothetical protein Csa_015876 [Cucumis sativus]) HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49 Identity = 114/168 (67.86%), Postives = 132/168 (78.57%), Query Frame = 0
BLAST of Lag0003131 vs. NCBI nr
Match: GAU28792.1 (hypothetical protein TSUD_357780 [Trifolium subterraneum]) HSP 1 Score: 104.8 bits (260), Expect = 7.5e-19 Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 0
BLAST of Lag0003131 vs. NCBI nr
Match: XP_009590813.1 (RING-H2 finger protein ATL52-like [Nicotiana tomentosiformis]) HSP 1 Score: 102.4 bits (254), Expect = 3.7e-18 Identity = 53/151 (35.10%), Postives = 88/151 (58.28%), Query Frame = 0
BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9LUZ9 (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16 Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0
BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15 Identity = 50/117 (42.74%), Postives = 63/117 (53.85%), Query Frame = 0
BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14 Identity = 52/132 (39.39%), Postives = 67/132 (50.76%), Query Frame = 0
BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2) HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14 Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0
BLAST of Lag0003131 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14 Identity = 40/89 (44.94%), Postives = 48/89 (53.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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