Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGCCGCGACAGAGGAAGCAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAACTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTGTCTTGACTAATCCTATAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAAAAAAAATTTGAACTACGTTATGACTTGATCCCTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAAAAAGTGCAACAAATATTGAAGCACGACGATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCGTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCATTTCGCTACAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACATCGCTTCGCTTCGCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCACTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCAGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCACTCCAGCGCTACTTCCTAAAGTCTAAAGACGTCAATTGCCCTCACGCTGCGCTGCTTCTTTCTCCAGGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCGTGCACTCGTGCTGA
mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGCAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAACTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCGTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCATTTCGCTACAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACATCGCTTCGCTTCGCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCACTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCAGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCACTCCAGCGCTACTTCCTAAAGTCTAAAGACGTCAATTGCCCTCACGCTGCGCTGCTTCTTTCTCCAGGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCGTGCACTCGTGCTGA
Coding sequence (CDS)
ATGAGTATGGCCGCGACAGAGGAAGCAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAACTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCGTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCATTTCGCTACAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACATCGCTTCGCTTCGCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCACTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCAGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCACTCCAGCGCTACTTCCTAAAGTCTAAAGACGTCAATTGCCCTCACGCTGCGCTGCTTCTTTCTCCAGGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGCGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCGTGCACTCGTGCTGA
Protein sequence
MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKWGQHSEWKLLPPSSKVPTRFAAVPSPKFEGSHALRCSSFLTVRRFSRASLQFLPHSSKVLTHFATVPSPQVRRFSRRFAAVPSSKFEGSHAFHCSSFLTVRRFSRASLQFLLPSSKVLTSLRFAHALRCVPSSKFEGSHALRSAIPSPSSKVLTRFVQFLPPNSKVLTRFVAFPSPQIRRFSRASLCNSFPKFEGSHALRAVPSSKFEGSHALRCISFPQIRRFSRASQQFLPQSSKVLTRFALQFLPPSSKVLTRFVQFLPPNSKVLTRFVALQRYFLKSKDVNCPHAALLLSPGSRVLMLRSATLLRYFLKSKDVNCPCTRAERRGGDTSPRNMSQLKEHVRALVLKGATAAQVQGTCPNSRNTSVHSC
Homology
BLAST of Lag0005093 vs. NCBI nr
Match:
KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 109.8 bits (273), Expect = 6.6e-20
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC MST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + +
Sbjct: 92 LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185
BLAST of Lag0005093 vs. NCBI nr
Match:
KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 109.0 bits (271), Expect = 1.1e-19
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244
BLAST of Lag0005093 vs. NCBI nr
Match:
KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 109.0 bits (271), Expect = 1.1e-19
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 92 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185
BLAST of Lag0005093 vs. NCBI nr
Match:
TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 107.8 bits (268), Expect = 2.5e-19
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+H+ VPSRMKRK SV I TEGSL
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661
BLAST of Lag0005093 vs. NCBI nr
Match:
KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 107.8 bits (268), Expect = 2.5e-19
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+H+ VPSRMKRK SV I TEGSL
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661
BLAST of Lag0005093 vs. ExPASy TrEMBL
Match:
A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 3.2e-20
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC MST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + +
Sbjct: 92 LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185
BLAST of Lag0005093 vs. ExPASy TrEMBL
Match:
A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 5.4e-20
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 92 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185
BLAST of Lag0005093 vs. ExPASy TrEMBL
Match:
A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 5.4e-20
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+HS VPSRMKRK SV I TEGSL
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244
BLAST of Lag0005093 vs. ExPASy TrEMBL
Match:
A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)
HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+H+ VPSRMKRK SV I TEGSL
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661
BLAST of Lag0005093 vs. ExPASy TrEMBL
Match:
A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)
HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 0
Query: 1 MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEV 60
+SMA EE NQC ST R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+
Sbjct: 568 LSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKA 627
Query: 61 KLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL 95
K F E N D K+H+ VPSRMKRK SV I TEGSL
Sbjct: 628 KPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0036008.1 | 6.6e-20 | 64.89 | Retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0044978.1 | 1.1e-19 | 64.89 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0050734.1 | 1.1e-19 | 64.89 | gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... | [more] |
| TYK08944.1 | 2.5e-19 | 63.83 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0055462.1 | 2.5e-19 | 63.83 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SZJ7 | 3.2e-20 | 64.89 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3BBF9 | 5.4e-20 | 64.89 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7TQ06 | 5.4e-20 | 64.89 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5A7UI09 | 1.2e-19 | 63.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3CCI8 | 1.2e-19 | 63.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
