Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTTGCAATTTACGGGTGGTAGAAAGAACACGGTTCGGGGACAGAAAAGCGAAGCCGAAGAACGAAATGGGTTATGTGCTGAGAGTGAGATTTGCTTCCTTCTTCGCCGGAGCGGCGGTTGCGTCGTGTCTAGGGTTTTATATTCTCCACAAAGATTACAAGATCGCTTATGAATCCATTTCGCATAAGGTATTCTCCGATTCTTCTTCATCGCGTTTTACATGGATTACTTTTTCCTTCGTTCGATTTGTGCGCTTTGTTTCTGATTCTTTACGATTTTAGATTTGATTTTTGTGAATTTTTCGAATTATCGGGCTAGGTGGTGGCTGGAGATACAGATTTATGTTTGATGCTCGTTTAGAAACTCGTTTCTGTGCGGAATCTTGAGGAGAAATTTGAAAATTAGGGGTTTTTGTTGGATAAGAGTCAGGTTCTCATATGGTTAGATTTCATTGGTCGGTGGGTAATTCATGGCTTGTAGTTGTATCCAATGTTGATGGGCTCTGGTCACTACAACATATTTCCATCGGCTTTCGGTTTTTTTATTTTTTATATATATACACCCGTGAGTGTCTGGGTTAGCTTGCATGCATCTCGAACATAATGTCTGACCCTACAACTTATGGACGTCAAGAAAATCCCTAGGAAATGAATTCCTGGTAGTTGACTCGATTGAATCTATGACTTCTTAGTTCCCCAAGACTCTCTTGACCATTAGACTACTCCATGGTGGTTGATTTTGAGCTTCTTGTTGTTAAATAGCTGCGGAAATTTCCTTTCCTGGTTCAATAAGAAAAAAATTGCAAGAGCAAGATGGAGATCAATAGAGAAAAAAGGTTGGATTCTGGGCATCAACTTCTGTAATCTTTTCTACACCCTTCTAAGTGTTGGATTCCAGGCAAACTTCTTAGGAGGTTGTCTCTGAGCAGCCACAGCATGCCATATCTTGCACGTTGCACCTCTTTGACAACCTTCGCTTAGAGAAGACCCTAGGTAATGAGGATTAATGACGACCCTTTAACTCATACAAAGTTCGCATCGGTTTCCAACAAGAAAATGGAAAATAATATTTACATCAACTAGAACAGGTGTGCTATCCTCAAGATTTTGGTTCGAGACTAATCTGTGACATTAATTTGTAGACACCTTCCATGTCTCTATTCCTTTGATGTCTCCCAATGGCCTAGGGACAACATAGTACCTTAAGTATAGTGGAGTGAAGTTTTGATTTTCCGGTCTTCGAAAAAAAGGATGGTTCAAATTGCTTGAATTATTAGCAACTGCGAACTATTCTCTAAGGGGTGGCACAATAGTTGAAGATTTGAGTTTTGAAGGTATGCTCTCTCAAGGTCCCAGGTTTGAAACTCACTTGTGATATTACTTCTTCGATGTCTACTGGAGTGGAGCCTGGCCTAGGAATGGGCATGGTTACCCTTGTTTAAAAAAAAAAAAAATATAGAAACTGCAAACTGTTCCTAACAGATGGATGTGGTAATCCCTTTATCCAATAAGAGTCTACTAAGACTTTTGTACATTCAATTTTAACGAAACATAAAAGTATGTTAATTATTAAACCTTCATTATTTAGATGTATTTTGTAATAAGAAACTTGTGCATTTTATATGCTTGTATTTATAAATAATTTATAGAACTCTACTAGTTGCAACTACTTGTGCATTTTCTATGCTTGTATATATAAATAATTTATAGAACTCTACTAGTGCAACTAAACGGTCTTTTAATTTCAGTAATTTTCAAGTGTAACTTTGCCTCCTCTCTCTCTCTTGTTTGGCTTTTTTTCCTGATGTTCGTCCTTTCTTAAATATTGTTTGCAAAGTCTTATTTGTGGTGTTTTGAAGATGATCAAGGAATATTCTGAAAAAAGGACTTTAATGTCCGACGTGGCATGTTCAAGAGTTCATTGTTTGAAACATAAAAAAGAAATTTGAAGTTCGCCCCATTACATATTTGTAGGCACCTGCACCCGTCCCAAGATTTTAATTTGAGAGACAATAAAAGAATTTACAATTAAGCTCACTTGTTTTGTAATGGTGTTATTTAGATGGAAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCGGCACTCGAAAAGCTGAAGCAGAATGATGATTCTCAACATGTTCAAACATCTGAGTAGACACTGGAGGCCAAGCCAGGATAGGGCCTTGGAATATAAAGAATTTAGGAGGAATAACAACAGCACAAAAACTGGTCTTCTTTGTGTGCTAAACAAGATGTCAAGTTTTTTCTTGGAAAATTTGTTGATTTAGTGTATGAATTCTGATCTTTGTTGTTATCAGATTTAGGTTTGTACTGAACTCCAACTTTACTTAAAGTTGATGTGGCTGAATGATCCATCCCTTCACTTTGGATCATAGCCTTCTTCCTTTGCTCTTTTTCATTTTGTCAATGATGGAAGTTTCATGCAAGACTTGGTAATGAAATTTGTGGGAAGCAGAAAAAAAAAAAAATAGCTCCTTAAAGTTCCAGTCATTGTGAATTTTAGAAAGTTT
mRNA sequence
TAATTTTGCAATTTACGGGTGGTAGAAAGAACACGGTTCGGGGACAGAAAAGCGAAGCCGAAGAACGAAATGGGTTATGTGCTGAGAGTGAGATTTGCTTCCTTCTTCGCCGGAGCGGCGGTTGCGTCGTGTCTAGGGTTTTATATTCTCCACAAAGATTACAAGATCGCTTATGAATCCATTTCGCATAAGATGGAAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCGGCACTCGAAAAGCTGAAGCAGAATGATGATTCTCAACATGTTCAAACATCTGAGTAGACACTGGAGGCCAAGCCAGGATAGGGCCTTGGAATATAAAGAATTTAGGAGGAATAACAACAGCACAAAAACTGGTCTTCTTTGTGTGCTAAACAAGATGTCAAGTTTTTTCTTGGAAAATTTGTTGATTTAGTGTATGAATTCTGATCTTTGTTGTTATCAGATTTAGGTTTGTACTGAACTCCAACTTTACTTAAAGTTGATGTGGCTGAATGATCCATCCCTTCACTTTGGATCATAGCCTTCTTCCTTTGCTCTTTTTCATTTTGTCAATGATGGAAGTTTCATGCAAGACTTGGTAATGAAATTTGTGGGAAGCAGAAAAAAAAAAAAATAGCTCCTTAAAGTTCCAGTCATTGTGAATTTTAGAAAGTTT
Coding sequence (CDS)
ATGGGTTATGTGCTGAGAGTGAGATTTGCTTCCTTCTTCGCCGGAGCGGCGGTTGCGTCGTGTCTAGGGTTTTATATTCTCCACAAAGATTACAAGATCGCTTATGAATCCATTTCGCATAAGATGGAAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCGGCACTCGAAAAGCTGAAGCAGAATGATGATTCTCAACATGTTCAAACATCTGAGTAG
Protein sequence
MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLKQNDDSQHVQTSE
Homology
BLAST of Sed0025475 vs. NCBI nr
Match:
KAG7035773.1 (hypothetical protein SDJN02_02571, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGY+LRVR ASFFAGAAVAS LGFY+L +DYKIAY+SIS KM GLHDSLESRISALEKL
Sbjct: 27 MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 86
Query: 61 QNDDSQHVQTSE 73
QND SQHVQ +E
Sbjct: 87 QNDGSQHVQRAE 98
BLAST of Sed0025475 vs. NCBI nr
Match:
XP_022138131.1 (uncharacterized protein LOC111009377 [Momordica charantia])
HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDSLESRISALEKL
Sbjct: 1 MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
QND SQHV T+E
Sbjct: 61 QNDGSQHVHTAE 72
BLAST of Sed0025475 vs. NCBI nr
Match:
XP_008437667.1 (PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo])
HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDS+ SRISALEKL
Sbjct: 1 MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSMGSRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72
BLAST of Sed0025475 vs. NCBI nr
Match:
XP_023551615.1 (uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDS+ESRISALEKL
Sbjct: 1 MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72
BLAST of Sed0025475 vs. NCBI nr
Match:
XP_011654572.1 (uncharacterized protein LOC101210533 [Cucumis sativus] >KGN49815.1 hypothetical protein Csa_000286 [Cucumis sativus])
HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDSL SRISALEKL
Sbjct: 1 MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
+ND SQHVQ +E
Sbjct: 61 KNDSSQHVQAAE 72
BLAST of Sed0025475 vs. ExPASy TrEMBL
Match:
A0A6J1C8U6 (uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009377 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 5.8e-22
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDSLESRISALEKL
Sbjct: 1 MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
QND SQHV T+E
Sbjct: 61 QNDGSQHVHTAE 72
BLAST of Sed0025475 vs. ExPASy TrEMBL
Match:
A0A1S3AUK7 (uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 7.6e-22
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDS+ SRISALEKL
Sbjct: 1 MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSMGSRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72
BLAST of Sed0025475 vs. ExPASy TrEMBL
Match:
A0A6J1IFZ7 (uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 9.9e-22
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SIS KM GLHDS+ESRISALEKL
Sbjct: 24 MGYVLRVRLASFFAGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 83
Query: 61 QNDDSQHVQTSE 73
QND SQHVQ +E
Sbjct: 84 QNDGSQHVQAAE 95
BLAST of Sed0025475 vs. ExPASy TrEMBL
Match:
A0A0A0KJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138470 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 9.9e-22
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFFAGAAVAS LG Y+L +DYKIAY+SISHKM GLHDSL SRISALEKL
Sbjct: 1 MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
+ND SQHVQ +E
Sbjct: 61 KNDSSQHVQAAE 72
BLAST of Sed0025475 vs. ExPASy TrEMBL
Match:
A0A6J1E8L7 (uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC111430397 PE=4 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 2.9e-21
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYVLRVR ASFF GAAVAS LG Y+L +DYKIAY+SIS KM GLHDS+ESRISALEKL
Sbjct: 1 MGYVLRVRLASFFTGAAVASSLGLYLLQRDYKIAYDSISQKMGGLHDSMESRISALEKLN 60
Query: 61 QNDDSQHVQTSE 73
QND SQHVQ +E
Sbjct: 61 QNDGSQHVQAAE 72
BLAST of Sed0025475 vs. TAIR 10
Match:
AT5G53650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 83.2 bits (204), Expect = 9.5e-17
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0
Query: 1 MGYVLRVRFASFFAGAAVASCLGFYILHKDYKIAYESISHKMEGLHDSLESRISALEKLK 60
MGYV RVR ASFFAGAA AS +G +L+KDYK+A+ESIS + + HDSL+ RIS LE L+
Sbjct: 1 MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60
Query: 61 QNDDSQHVQTSE 73
Q++ Q +T+E
Sbjct: 61 QSEAPQLAETTE 72
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7035773.1 | 3.1e-22 | 81.94 | hypothetical protein SDJN02_02571, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022138131.1 | 1.2e-21 | 81.94 | uncharacterized protein LOC111009377 [Momordica charantia] | [more] |
XP_008437667.1 | 1.6e-21 | 80.56 | PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo] | [more] |
XP_023551615.1 | 2.0e-21 | 80.56 | uncharacterized protein LOC111809395 [Cucurbita pepo subsp. pepo] | [more] |
XP_011654572.1 | 2.0e-21 | 80.56 | uncharacterized protein LOC101210533 [Cucumis sativus] >KGN49815.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1C8U6 | 5.8e-22 | 81.94 | uncharacterized protein LOC111009377 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
A0A1S3AUK7 | 7.6e-22 | 80.56 | uncharacterized protein LOC103483008 OS=Cucumis melo OX=3656 GN=LOC103483008 PE=... | [more] |
A0A6J1IFZ7 | 9.9e-22 | 80.56 | uncharacterized protein LOC111472986 OS=Cucurbita maxima OX=3661 GN=LOC111472986... | [more] |
A0A0A0KJB2 | 9.9e-22 | 80.56 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138470 PE=4 SV=1 | [more] |
A0A6J1E8L7 | 2.9e-21 | 79.17 | uncharacterized protein LOC111430397 OS=Cucurbita moschata OX=3662 GN=LOC1114303... | [more] |
Match Name | E-value | Identity | Description | |
AT5G53650.1 | 9.5e-17 | 58.33 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |