Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTGTAATTTCACAATAATGTTGGTGGTACCTTACTAACTCATCATTCTTTTGTACTGAAAAGTAATTAGAAAAAGTATGATTTAGAGTTTTCTCAATCATTGTATTAGTTCATTCAAATGTACTAATTACCACTCTCTGAATAAAATTTGTCTTCCTTCTTTCCTCTTGTAAATTAACCCTCCTTTTCCTTAGAACTCTTCATTACATATTACTAAAATTTGGCAGTTGTATAATCTTGTTTGCCACTTAAACAAATAAGCACTTAAATAGATATTACTAATCTTGTTTGCTATTTATTTAACCTTTTTAATAGAACATAGGAACATCGATTGTTGACTTAATAAAGAAATGTTCTATATGATTGTTAAAACTGTAAATGATGAGTTCAAACGTCTGAATCAGTTCAGAGGTCTTAGGAACTACTTCCTTTGGGGCAAAATTCTTGCATTATGCTCATACCATACCCATAGGGCTATTCCTATTAATTGTTTAGAAGGCTTTGCCTATTCGAAGATCAATGGCTAGGGATGACAAGTATTTTAAATTATGAATGGCTATTTGATATTTTTAGCTTTTTGTTTTTGAAATTTATGCTTGTTTCTTCGCAATTATCTCACTCGTGTTGCTTTAAAGAAAACACATGAGTTATTTGTTAAATTTCAAAGACAAAAGCTATTTCTTCTTATTTCAAAACTTGACTTGATTTTTATAGCATTAATAGAAAGTTGATGACAAAAAAAAGGAACTTATAGGTGAAAGTTCAAATGATTATCAAACAAGACCCAAGTTTTCATCATTGGGTTTGAAACTCAAACTTGGGAGGGTACCTCCAAACATCTAGGTTCTTTTCATTGGAGTTAACAAAATTGTAGTTTGAGCATTGATGTTACTTTTTAAGTATAAGTGAAAAGTTCATCTTTTTTCCCCCTAAAAAAAGCAAACTTAAAAGGATAACTGTATGAAGCATTTGGTTTTTCATTTGACAGTCCAAAAGTGCTATATTACATGAACTTGCTTGTTTGTTAAACTAGGATCCATTTCATTGATTAAATGGACTTGTTTCTTCCTGGAATTAGTTTCTAATTGCTCCTCTATCTTAACTTGGGGAGAAAACAGGGAGGGAAATAAACATCTATAATTCTTTAGTTTTTATTTTTGGAAGTTCCTATAGCATTATTCACAAAATAAACTTCCCAGAAGAAATAAACAGTTTGAACTGTTCTACAACAGTTGAACTTTCCAACAGTTGATGCCAGAAAAAGTGAAAAGTTCCAAGGGCTCAAACCTTTAGTTTCCTTACTTCCTTAACAAGTTGATGAAGAATCTGATTGCACATTTACTCAATATCTTGGATGATATCTCCAAACACATCCCAATTCCAAAGGCCCTTACCAGTTACACCATCGTTCAATGGGATTTAAATTCCACAAATTTCAAAGTTGATTTTCTTTCTCTATGTTCTGCTGATCTTATCTATGAATATATTATGCTGAGAAACAATCTGAATTCCAACGGTTGTTGGTCACTGCAGGAAACAAAATTGATCTACATAGTTGTAAATGATATTTGGTTTATTTTGATCTGTCATTATTCGAACAGATCAGATCCAGGGTTCAAATTCATCGTCTTCATCCTACTTCCCCCATCGCCATTTTCACTGCTTAATGGTATTCGTATATCAATCCTCTTTTCGCTCTCATTAACTATATGCTCCACAGTAAGCTTTGTGTTGTTCAGCATTCTCTGTACCTGATGCTTCTCTATCCATTTTCTTGTTTTTGTTTTAATTTTCTTTTGTATCTTGTTGAGTTATTGATTTTTAGAATAATGAAATCTGCATAAGTTCTTTTGTTATATTATACGTTGCTGTGCATTTTTCTTCCCTTCCTTATATCTTTGGTTTTTTTCTTTTTAATGGATGTGTGTGTGAGGGCTTGAGATAGGTTGAGTGGTAGCTTTTTGTTTCTGATATTGGATGGTGTGGTTTCTATTGATTTAGTCATATTTTATCTCTGATTTCTGTTTGTCAACTAATTAGAGAGCTGGCATAATTTTGGAGGGTTGATTCTATTTCAGAGAAATGGTTGCCCCTCTATAAATTGGAGCTACCTCTTAAATTGGTGTTTGAGTGAAAGGCACTGCCAGTTCATTTGCCGCTAACTTATAACTAACTAATGATTCTTTGAATTTTACCTGCAGGCTGCAATTTTATAATTATTGGCATTGCTGGTTAA
mRNA sequence
ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTATCAGATCCAGGGTTCAAATTCATCGTCTTCATCCTACTTCCCCCATCGCCATTTTCACTGCTTAATGGCTGCAATTTTATAATTATTGGCATTGCTGGTTAA
Coding sequence (CDS)
ATGACTGATTTTTTCTTGGACCGGAAGAGGAAAATCGAATCGGAGACGTGTAAGCTTTGTCAGAAAGTTGATGACGTTATGTGCCCTAAGTGGGACGAGCGGCTCGAGCTTATGTCGGAACACGAATTGAGAGAGTTCATGGAAGGACTGAATGTGAAAATCGAAGCTGCCAATGGAATGATCGATTTGATGGAAGCCGATTACGAAGATCTGTTTGGCCAGCTGTGTTCGGAAAATTCAGTTCAAATGGGAGGGGATTCCAATCCTACTACTCCACTGCCGAATTGGGCTAGCCCTAATGAAGAAGAAGTGGCGATGGATGAGTTCAATAATAGTAGGTATCTTCAAATGGGGTTGGAGGAAGAACAAGAAGTCAACTACATGGTTCATTATACAAATCTGATGAACGCTGAGTTTTATTATTACAATAATATTGAGCATTTGATGATTCCCACCGGTAACCTATCAGATCCAGGGTTCAAATTCATCGTCTTCATCCTACTTCCCCCATCGCCATTTTCACTGCTTAATGGCTGCAATTTTATAATTATTGGCATTGCTGGTTAA
Protein sequence
MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDLMEADYEDLFGQLCSENSVQMGGDSNPTTPLPNWASPNEEEVAMDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGNLSDPGFKFIVFILLPPSPFSLLNGCNFIIIGIAG
Homology
BLAST of ClCG10G008160 vs. NCBI nr
Match:
XP_038887059.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])
HSP 1 Score: 166.8 bits (421), Expect = 1.8e-37
Identity = 92/142 (64.79%), Postives = 108/142 (76.06%), Query Frame = 0
Query: 1 MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
+TD+F DRKRKIESETCKL +K MCPKWDE L+ +SEHELREFMEGL+ KIEAANGM
Sbjct: 98 LTDYFSDRKRKIESETCKLREK---FMCPKWDEWLDRLSEHELREFMEGLDAKIEAANGM 157
Query: 61 IDLME-ADYEDLFGQLCSENSVQMGGDSNPTTPLPN-------WASPNEEEV-AMDEFNN 120
ID ME AD+E+LFG+LCSENSVQMG DS P +P+ A+ EE+V A+DE +N
Sbjct: 158 IDFMELADHENLFGELCSENSVQMGEDSIPQVLIPSVDDLFATGANHTEEDVMALDEIDN 217
Query: 121 SRYLQMGLEEEQEVNYMVHYTN 134
RYLQM L EE+E NYM HY N
Sbjct: 218 IRYLQMLLGEEEEDNYMAHYAN 236
BLAST of ClCG10G008160 vs. NCBI nr
Match:
XP_038887053.1 (agamous-like MADS-box protein AGL82, partial [Benincasa hispida])
HSP 1 Score: 135.2 bits (339), Expect = 5.9e-28
Identity = 78/133 (58.65%), Postives = 96/133 (72.18%), Query Frame = 0
Query: 1 MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
+TD+F DRKRKIESETCKL +K MCPKWDE L+ +SEHELREFMEGL+ KIEAANGM
Sbjct: 98 LTDYFSDRKRKIESETCKLREK---FMCPKWDEWLDRLSEHELREFMEGLDAKIEAANGM 157
Query: 61 IDLME-ADYEDLFGQLCSENSVQMGGDSNPTTPLPN-------WASPNEEEV-AMDEFNN 120
ID ME AD+E+LFG+LCSENSVQMG DS P +P+ A+ EE+V A+D +
Sbjct: 158 IDFMELADHENLFGELCSENSVQMGEDSIPQVLIPSVDDLFATGANHTEEDVMALDAVS- 217
Query: 121 SRYLQMGLEEEQE 125
Y + + + QE
Sbjct: 218 --YTHLDVYKRQE 224
BLAST of ClCG10G008160 vs. NCBI nr
Match:
XP_022935361.1 (agamous-like MADS-box protein AGL14 [Cucurbita moschata])
HSP 1 Score: 127.5 bits (319), Expect = 1.2e-25
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 0
Query: 1 MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
++D+F DRKRK+ +E CK +KV +M P WDERL+ +SE +LREFM GL+ +IEAA M
Sbjct: 97 LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156
Query: 61 IDLMEADYEDLFGQL-CS--ENSVQMGGDSNPTTPLP-----------NWASPNEEEVAM 120
+D M+AD E+LFG C EN VQMGGDS +TP+P N +PN+ E+
Sbjct: 157 VDFMDADNENLFGMFSCEEYENVVQMGGDS--STPVPPLVELESPDSLNSPNPNKHEIGC 216
Query: 121 DEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
+ F N +L LE+E E NYM Y NLMN EF N+IE + TGN
Sbjct: 217 N-FENLEFL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 256
BLAST of ClCG10G008160 vs. NCBI nr
Match:
XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 125.9 bits (315), Expect = 3.6e-25
Identity = 83/169 (49.11%), Postives = 106/169 (62.72%), Query Frame = 0
Query: 1 MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
++D+F DRKRK+ +E CK +KV +M P WDERL+ +SE +LREFM GL+ +IEAA M
Sbjct: 97 LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156
Query: 61 IDLMEADYEDLFGQL-CS--ENSVQMGGDSN-PTTPL-----------PNWASPNEEEVA 120
ID M+AD E+LFG C EN VQMGGDS+ P PL PN +PNE+E+
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVPPLVELESPDSLNTPN-PNPNEDEIG 216
Query: 121 MDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
+ F N +L LE+E E NYM Y NLMN E N+IE + TGN
Sbjct: 217 CN-FENLEFL---LEDEDE-NYMALYANLMNDELDECNDIEQ-WLRTGN 258
BLAST of ClCG10G008160 vs. NCBI nr
Match:
XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])
HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 82/171 (47.95%), Postives = 105/171 (61.40%), Query Frame = 0
Query: 1 MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
++D+F DRKRK+ +E CK +KV +M P WDERL+ +SE +LREFM GL+ +IEAA M
Sbjct: 97 LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156
Query: 61 IDLMEADYEDLFGQL-CS--ENSVQMGGDSNP--------------TTPLPNWASPNEEE 120
ID M+AD E+LFG C EN VQMGGDS+ +P PN P+E+E
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVLSLVELESTDSLNSPNPN---PDEDE 216
Query: 121 VAMDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
+ + F N YL LE+E E NYM Y NLMN EF N+IE + TGN
Sbjct: 217 IGCN-FENLEYL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 258
BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match:
A0A6J1F4C8 (agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC111442271 PE=4 SV=1)
HSP 1 Score: 127.5 bits (319), Expect = 5.9e-26
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 0
Query: 1 MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
++D+F DRKRK+ +E CK +KV +M P WDERL+ +SE +LREFM GL+ +IEAA M
Sbjct: 97 LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156
Query: 61 IDLMEADYEDLFGQL-CS--ENSVQMGGDSNPTTPLP-----------NWASPNEEEVAM 120
+D M+AD E+LFG C EN VQMGGDS +TP+P N +PN+ E+
Sbjct: 157 VDFMDADNENLFGMFSCEEYENVVQMGGDS--STPVPPLVELESPDSLNSPNPNKHEIGC 216
Query: 121 DEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
+ F N +L LE+E E NYM Y NLMN EF N+IE + TGN
Sbjct: 217 N-FENLEFL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 256
BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match:
A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 2.3e-25
Identity = 82/171 (47.95%), Postives = 105/171 (61.40%), Query Frame = 0
Query: 1 MTDFFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGM 60
++D+F DRKRK+ +E CK +KV +M P WDERL+ +SE +LREFM GL+ +IEAA M
Sbjct: 97 LSDYFSDRKRKLVTEMCKHREKVGKIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRM 156
Query: 61 IDLMEADYEDLFGQL-CS--ENSVQMGGDSNP--------------TTPLPNWASPNEEE 120
ID M+AD E+LFG C EN VQMGGDS+ +P PN P+E+E
Sbjct: 157 IDFMDADNENLFGMFSCEEYENVVQMGGDSSTPVLSLVELESTDSLNSPNPN---PDEDE 216
Query: 121 VAMDEFNNSRYLQMGLEEEQEVNYMVHYTNLMNAEFYYYNNIEHLMIPTGN 155
+ + F N YL LE+E E NYM Y NLMN EF N+IE + TGN
Sbjct: 217 IGCN-FENLEYL---LEDEDE-NYMALYANLMNDEFDECNDIEQ-WLRTGN 258
BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match:
A0A6J1CQB5 (uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0
Query: 4 FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
+F DR +KIE+E K +D+ CP WDERLE +S H+LR ME L K E A GMI
Sbjct: 70 YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129
Query: 64 ME 66
ME
Sbjct: 130 ME 131
BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match:
A0A6J1CQB2 (uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0
Query: 4 FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
+F DR +KIE+E K +D+ CP WDERLE +S H+LR ME L K E A GMI
Sbjct: 70 YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129
Query: 64 ME 66
ME
Sbjct: 130 ME 131
BLAST of ClCG10G008160 vs. ExPASy TrEMBL
Match:
A0A6J1CNU9 (uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 0
Query: 4 FFLDRKRKIESETCKLCQKVDDVMCPKWDERLELMSEHELREFMEGLNVKIEAANGMIDL 63
+F DR +KIE+E K +D+ CP WDERLE +S H+LR ME L K E A GMI
Sbjct: 70 YFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKSEVAEGMIGF 129
Query: 64 ME 66
ME
Sbjct: 130 ME 131
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038887059.1 | 1.8e-37 | 64.79 | agamous-like MADS-box protein AGL82, partial [Benincasa hispida] | [more] |
| XP_038887053.1 | 5.9e-28 | 58.65 | agamous-like MADS-box protein AGL82, partial [Benincasa hispida] | [more] |
| XP_022935361.1 | 1.2e-25 | 48.21 | agamous-like MADS-box protein AGL14 [Cucurbita moschata] | [more] |
| XP_023528957.1 | 3.6e-25 | 49.11 | agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022983430.1 | 4.7e-25 | 47.95 | agamous-like MADS-box protein AGL14 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1F4C8 | 5.9e-26 | 48.21 | agamous-like MADS-box protein AGL14 OS=Cucurbita moschata OX=3662 GN=LOC11144227... | [more] |
| A0A6J1J5U6 | 2.3e-25 | 47.95 | agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ... | [more] |
| A0A6J1CQB5 | 4.3e-08 | 51.61 | uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
| A0A6J1CQB2 | 4.3e-08 | 51.61 | uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 G... | [more] |
| A0A6J1CNU9 | 4.3e-08 | 51.61 | uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
