Sed0001211 (gene) Chayote v1

Overview


Name	Sed0001211
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Contig00306_ERROPOS2061915: 59586 .. 63522 (+)
RNA-Seq Expression	Sed0001211
Synteny	Sed0001211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTTTTGGGTTCATAGTGAAAGCTCGAAAACTCTGCACCATTCCCACAAGCTTCGCTCGAAAATGGTAGCAGCTTCAGCTTTTCCTGCATCTCTCAGTTTATCCGTAACTTCGCACAATCGAACGTCATCCCTTCCTCAATTTTCTCGCAGGTATATACGTTTTTTTCTTCTTCTGAACCATTTGTCTAATCCCATCAGAACTCTGAACTTATCATCTCTCTTTTCTGCGTCTTTATCGTGTAGAAATTCACTCAGGTCGATAGTTTCTTCCTTGCCGAGGTCCTATGGCGACTCTTCAACTATCGGTAATCTGTTTTGTTCAATTGACGTTTGAATTTCTGCGTATGCTGATTTGAATGCCCTAATTTTGTAGCAGAAGACTTCATTTTTGTATAGACTGACTTATTCGTACTGTTTTAGTGTCTATTGCATCATGTTTACAACTCCGTGTTGATTCTCTGACGATTTTATGAAACTAGTGAATTCCTTTTGAATTATGCAAGGAAATGACTATGTGGAATTTCCCCCTTTTTGAAGGATTATCGAGTAAAACGAATGGGACACCTATAAACCTTGAAGATAGAGATTTTCTTCACACCAGTACAAGGTTTGCGCTGTTCCCAATTTCGTGGTTTTAGCATTTACCGAATGCTTATTTATGATCATAACATTGTTTTGAAAGTTAATATAGTTTGGATTACTTTTTTTCTGAAATTGGGATTGCAACACCATCCTTTTTGTGTAGCATTTCCATATATTTTACAATTCTTTTCCCGCCTAACGATATTCTGTTCTGCCTTTTAATTTTATTCCTTTAACACGATGAAGTAATTAAGCAGATGGGCATTTTATTCTCCTTTGTACAGTTATGGACCTATAGTGGCCAACAAGAAGGGTAATCCACCAATAATGCCTGGAGTAATGACACCGGCAGGGCCTTTGGATCTCTCTTCTGTGTTGTTTAGGAATCGGATCATATTTATTGGTCAACCTATCAACTCCATAGTGGCACAGCGAGTCATATCACAGCTTGTGACTCTAGCAACCATTGATGAGAATGCAGATATCCTGGTCTGCAAAAAAAAAACTCACTATTTTTCTTCTAATTCTGTCAACTAGAGATTGATTCTTTATTTTTTATTTTTTTTAAAGATTAGTTTTTAACCTTATTAGGTATATCTGAACTGCCCTGGTGGAAGTACATACTCTGTATTGGCAATTTATGATTGTATGTCTTGGGTAAGTCTGTAAAGCTCTATCTCTATCTCTATCTCCCCCTCTCCCTTCAATGTTTAGTTCGTTTTAAGTCTTATTATTATTTTGTATAATACTTAAGCATTCGCTTTTTCAGTTATTGATGTTGATATCAATGGTGTTTATGATACTTCCATGTTCACAAAATCTCTTGATTGCCAACAAGAGCATAGCTAGAGTGGCATGATATATGGCCTAGTAACCAAGAGGTTATGACTTATGAGTTCGAATTCCCATCTTATGTTTTTTTTTAAACAAGGGTACATCCTAAGTTGTTGAATTCAAACAAAATGGACAGCTGCTATGGGGCAGCAATATTTGCTATACTACATGCTTCTTTTTGCACTAGATAATAGTTTCAATCATTAGCTAAATAAAATATAGAATTCAAACGTATGATGCCTTGTTATGATTTGGTTTTCTGTTTAGAGCATTCAGTCATCATCACGTCCTATTTGATCTATCCATATTTTGAATATGAAAGGATGAGGACTTATTAGAGATACTTGACTCATGCTTTCAGATAAAGCCCAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGATATGCGATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGTATGGTTAAAATTTTATAACAATCTCAGGCATCTTAAATGAAGAGGAAAAAGGATGGAAAAGAATATACGCTTATCCTTGTTTTATATTGCAAAAATAATGATTAGTATACCAAAAAAAAAAAAAAAAGATTAGTAGTGTGATGCAAGTCTTGATTTAAGTTGTTCCCTTTGTCTCCTTTTTTTTCATACCCAAATGACTAATACTTCAAAATCGCTCGAGCTTGTGTCATATATATATACACACTTTTCCCTAATTTTGGCCGTGACAAGTAATAAGCCAGCAAAAATTCAAATAATTAGTTATGAGGGATAATGTGGGTTTTTGGATGAATGCAGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATGTCAGTATCTCTTTTGTTCATTTTATTATTGCCAGTTGTGACAAAAAATTATAAAAATTAGAGCTATTGAGAAATGGTTTTACCACGTATGAAGAAAGAAGAATATTTCTGCCTGGTGATATTCTTACCTGAATCATTATTGTGCAAGTAGGCGGTGAACCAGTTCAGCTTGTTATATTGGCACAATAGCTGATGCCATAATATTTACAGATGAAATATATATCTGGACTGCCTTTTGGGAAGGATGTGTGGCAATTGCAAATGTAGCTATCTTCTTCATCATCTTTATGAAGTTGAAACCATTGTGGATGGAAAGATAATTCATGAATTAGGAGGGATTATTTTCTTTATATTTAAGCATATTGGAACTTGGAAGTGTAAAATATTGCCAACGAAAGTAAGTAAGTTTAGAAAGTTGCAATCTTTGGCCAACCCCCAAGTAACTGCATCTTGGGAGAACGAGATTAAATTTTATGGTGCCACTTAAGATATAATGACATCTTGGGAAAATGACAGTAAATTTTATGGTGGCCACTTAAGAGTTAGGATATTTAAGATTTTTGTGTCCTTTGAGTTTCCACTCACTGTGTTCTTTGCTTGCACTTTGCAGTCAGATTTGGTCCAGTATTTGGTTTGATTATTCATTTATCAATTGATCATTTCAATTGTTCCCTGGATTTATTGGTGCAGAAAGTGGACATGATGTATGCTGCATTTACTGGCCAACCTGTAGAGAAAGTACAACAATTCACCGAGCGGGATCGATTTTTGTCTGTTTCTGAGGTAACATTTTTCAGTGTCTAGTGAATGAATTGAAATTAAAAAATTATTTGAAGTCCATCTTTATACAAAATGAAAGGATTTTGGACATGAGATAAAGACCGAGGGAGAAAAGTTAGGTAATTAGGCTTAATGGTACAGGTAAAAATAAGTTTTTCAGGATCCTTCCTGGTAAAATCTTTTCCTCTACGCTGAAATTTTGGCTACTTGATTAGAACTCGTGTCAACTACTGCAACAAAGTTTTTTTTGGATAAGAACTACTGCAACGAAGTTAAGGGAACATAATACTGGCTAAAAGTAGTATTCCAGTAACATCATGTATCAAATAGTAACGAGTTGGTTATGGGTTCAAGTCTCAATGTTGTTGATCTCAAAATGTTGTTGATTTAAAAAAAAAGAACATAATACTGAAACTTCAAAACCCTTTGCCTTCTCTTGCAGGCTTTGGAGTTTGGGCTTATCGATGGGGTGCTGGAAACAGAATACTGAGCTTGGTTTTTGACGAAGATCAATAGTTCATCAGCCTTATGTGCCAATTGCCGTGATTTGATTATGTAGAATTTGACTTCTTTATGGGAGACTTGATTTCAGTCTGCCAAATCATCTGTACCAAGCTTCGATACAGACATTCAAGGTTTGAATATAATTTCATGCGCTTCATCCTATCTTTGGTAGCAAATATTTTAAATCAATGCATATGGGCTAGCATTTCAGAACACAATGATATTGTTTGTATGATTTGCATTCGAATCGATATTTAGTCAAAATTCCTGATCTTGAAATTGTGTTCTTGGACTGTCTCCTTGACCATGATCCTGAAAGCATCTTAACAAATACAGGAC

mRNA sequence

TTCCCTTTTGGGTTCATAGTGAAAGCTCGAAAACTCTGCACCATTCCCACAAGCTTCGCTCGAAAATGGTAGCAGCTTCAGCTTTTCCTGCATCTCTCAGTTTATCCGTAACTTCGCACAATCGAACGTCATCCCTTCCTCAATTTTCTCGCAGAAATTCACTCAGGTCGATAGTTTCTTCCTTGCCGAGGTCCTATGGCGACTCTTCAACTATCGGATTATCGAGTAAAACGAATGGGACACCTATAAACCTTGAAGATAGAGATTTTCTTCACACCAGTACAAGTTATGGACCTATAGTGGCCAACAAGAAGGGTAATCCACCAATAATGCCTGGAGTAATGACACCGGCAGGGCCTTTGGATCTCTCTTCTGTGTTGTTTAGGAATCGGATCATATTTATTGGTCAACCTATCAACTCCATAGTGGCACAGCGAGTCATATCACAGCTTGTGACTCTAGCAACCATTGATGAGAATGCAGATATCCTGGTATATCTGAACTGCCCTGGTGGAAGTACATACTCTGTATTGGCAATTTATGATTGTATGTCTTGGATAAAGCCCAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGATATGCGATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTGGACATGATGTATGCTGCATTTACTGGCCAACCTGTAGAGAAAGTACAACAATTCACCGAGCGGGATCGATTTTTGTCTGTTTCTGAGGCTTTGGAGTTTGGGCTTATCGATGGGGTGCTGGAAACAGAATACTGAGCTTGGTTTTTGACGAAGATCAATAGTTCATCAGCCTTATGTGCCAATTGCCGTGATTTGATTATGTAGAATTTGACTTCTTTATGGGAGACTTGATTTCAGTCTGCCAAATCATCTGTACCAAGCTTCGATACAGACATTCAAGGTTTGAATATAATTTCATGCGCTTCATCCTATCTTTGGTAGCAAATATTTTAAATCAATGCATATGGGCTAGCATTTCAGAACACAATGATATTGTTTGTATGATTTGCATTCGAATCGATATTTAGTCAAAATTCCTGATCTTGAAATTGTGTTCTTGGACTGTCTCCTTGACCATGATCCTGAAAGCATCTTAACAAATACAGGAC

Coding sequence (CDS)

ATGGTAGCAGCTTCAGCTTTTCCTGCATCTCTCAGTTTATCCGTAACTTCGCACAATCGAACGTCATCCCTTCCTCAATTTTCTCGCAGAAATTCACTCAGGTCGATAGTTTCTTCCTTGCCGAGGTCCTATGGCGACTCTTCAACTATCGGATTATCGAGTAAAACGAATGGGACACCTATAAACCTTGAAGATAGAGATTTTCTTCACACCAGTACAAGTTATGGACCTATAGTGGCCAACAAGAAGGGTAATCCACCAATAATGCCTGGAGTAATGACACCGGCAGGGCCTTTGGATCTCTCTTCTGTGTTGTTTAGGAATCGGATCATATTTATTGGTCAACCTATCAACTCCATAGTGGCACAGCGAGTCATATCACAGCTTGTGACTCTAGCAACCATTGATGAGAATGCAGATATCCTGGTATATCTGAACTGCCCTGGTGGAAGTACATACTCTGTATTGGCAATTTATGATTGTATGTCTTGGATAAAGCCCAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGATATGCGATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTGGACATGATGTATGCTGCATTTACTGGCCAACCTGTAGAGAAAGTACAACAATTCACCGAGCGGGATCGATTTTTGTCTGTTTCTGAGGCTTTGGAGTTTGGGCTTATCGATGGGGTGCTGGAAACAGAATACTGA

Protein sequence

MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTPINLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSIVAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY

Homology

[Close]

BLAST of Sed0001211 vs. NCBI nr
Match: XP_038902836.1 (ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 483.8 bits (1244), Expect = 9.9e-133
Identity = 246/275 (89.45%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           M  ASAF ASLS SV+SHNRTSS+ Q SRRNS RSIVS+LPR YGDSSTIGLSSKT G P
Sbjct: 1   MAVASAFTASLSFSVSSHNRTSSISQLSRRNSHRSIVSALPRPYGDSSTIGLSSKTMGEP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           ++++D+DFLHTSTSYGPI A +KGNPPIMP VMTP GPLDLSSVLFRNRIIFIGQP+NSI
Sbjct: 61  LHVDDKDFLHTSTSYGPIEA-RKGNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSI 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE+ADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHK+D MYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QP+EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QPIEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274

[Close]

BLAST of Sed0001211 vs. NCBI nr
Match: XP_023007112.1 (ATP-dependent Clp protease proteolytic subunit 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131
Identity = 247/275 (89.82%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           M  ASAF ASL  SV+SHNR SS+PQ SRRNS RSIVS++PR YGDSSTIGLSSKT GTP
Sbjct: 1   MAVASAFTASLCFSVSSHNRASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGTP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL D DFLHTSTSYGPI+A KKGNPPIMP VMTP GPL+LSSVLFRNRIIFIGQPINS 
Sbjct: 61  LNL-DEDFLHTSTSYGPIMA-KKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSA 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE +DILVYLNCPGGSTYS+LAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QP+EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273

[Close]

BLAST of Sed0001211 vs. NCBI nr
Match: XP_022948075.1 (ATP-dependent Clp protease proteolytic subunit 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 478.8 bits (1231), Expect = 3.2e-131
Identity = 247/275 (89.82%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           MV ASAF ASL  SV+SHNR SS+PQ SRRNS RSIVS++PR YGDSSTIGLSSKT G P
Sbjct: 1   MVVASAFTASLCFSVSSHNRASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGAP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL D DFLHTSTSYGPI+A KKGNPPIMP VMTP GPL+LSSVLFRNRIIFIGQPINS 
Sbjct: 61  LNL-DEDFLHTSTSYGPIMA-KKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSN 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE +DILVYLNCPGGSTYS+LAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QP+EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273

[Close]

BLAST of Sed0001211 vs. NCBI nr
Match: XP_008457934.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 477.6 bits (1228), Expect = 7.1e-131
Identity = 246/275 (89.45%), Postives = 257/275 (93.45%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           MV AS F ASL+ SV S NRTSS+PQ SRR S RSIVS+LPR YGDSSTIGLSSKTNG P
Sbjct: 1   MVVASPFTASLTFSVASLNRTSSIPQLSRRYSHRSIVSALPRPYGDSSTIGLSSKTNGAP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL+D+DFL TSTSYGPI A +KGNPPIMP VMTP GPLDLSSVLFRNRIIFIGQP+NS 
Sbjct: 61  LNLDDKDFLLTSTSYGPIEA-RKGNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNST 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE+ADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           Q +EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QSIEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274

[Close]

BLAST of Sed0001211 vs. NCBI nr
Match: KAG6605088.1 (ATP-dependent Clp protease proteolytic subunit 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035095.1 ATP-dependent Clp protease proteolytic subunit 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 476.5 bits (1225), Expect = 1.6e-130
Identity = 246/275 (89.45%), Postives = 257/275 (93.45%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           MV ASAF ASL  SV+SHNR SS+PQ S RNS RSIVS++PR YGDSSTIGLSSKT G P
Sbjct: 1   MVVASAFTASLCFSVSSHNRASSVPQLSSRNSRRSIVSAIPRPYGDSSTIGLSSKTVGAP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL D DFLHTSTSYGPI+A KKGNPPIMP VMTP GPL+LSSVLFRNRIIFIGQPINS 
Sbjct: 61  LNL-DEDFLHTSTSYGPIMA-KKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSN 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE +DILVYLNCPGGSTYS+LAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QP+EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273

[Close]

BLAST of Sed0001211 vs. ExPASy Swiss-Prot
Match: Q9SAA2 (ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP6 PE=1 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.1e-105
Identity = 197/269 (73.23%), Postives = 228/269 (84.76%), Query Frame = 0


Query: 8   PASLSLSVTSHN-RTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTPINLEDR 67
           P  LS S  + N + +S    ++RN +R IVS+L   YGDS   GLSS  +G+PI ++++
Sbjct: 9   PLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNK 68

Query: 68  DFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSIVAQRVI 127
                +  +G I A KKGNPP+MP VMTP GPLDLSSVLFRNRIIFIGQPIN+ VAQRVI
Sbjct: 69  -----APRFGVIEA-KKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVI 128

Query: 128 SQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLA 187
           SQLVTLA+ID+ +DIL+YLNCPGGSTYSVLAIYDCMSWIKPKVGTV FGVAASQGALLLA
Sbjct: 129 SQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLA 188

Query: 188 GGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPVEKV 247
           GGEKGMRYAMPN+R+MIHQPQ+GCGGHVEDVRRQVNEA+++R K+D MYAAFTGQP+EKV
Sbjct: 189 GGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKV 248

Query: 248 QQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QQ+TERDRFLS SEALEFGLIDG+LETEY
Sbjct: 249 QQYTERDRFLSASEALEFGLIDGLLETEY 271

[Close]

BLAST of Sed0001211 vs. ExPASy Swiss-Prot
Match: Q59993 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.3e-42
Identity = 89/188 (47.34%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 88  IMPGVMTPAG----PLDLSSVLFRNRIIFIGQPINSIVAQRVISQLVTLATIDENADILV 147
           ++P V+  +G      D+ S L R RIIF+G P++  VA  +++QL+ L   D   DI +
Sbjct: 23  VVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQL 82

Query: 148 YLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMI 207
           Y+N PGGS Y+ LAIYD M  I+P V T+CFG+AAS GA LL+GG KG R A+P+SRIMI
Sbjct: 83  YINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMI 142

Query: 208 HQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPVEKVQQFTERDRFLSVSEALE 267
           HQP  G  G   ++  Q  E +  + +++ M    TGQP+EK+Q+ TERD F+S  EA E
Sbjct: 143 HQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKE 202

Query: 268 FGLIDGVL 272
           +GLID V+
Sbjct: 203 YGLIDQVI 210

[Close]

BLAST of Sed0001211 vs. ExPASy Swiss-Prot
Match: Q317Y6 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) OX=74546 GN=clpP4 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-41
Identity = 94/213 (44.13%), Postives = 129/213 (60.56%), Query Frame = 0


Query: 61  INLEDRDFLHTS-TSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINS 120
           +N E +  + +S +SY  I       P ++          D+ S L R RIIF+G  IN 
Sbjct: 6   VNSEKKHLIQSSISSYESIHKTIGAVPTVIEQSGRGERAFDIYSRLLRERIIFLGSGIND 65

Query: 121 IVAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAAS 180
            V+  +++QL+ L   D   DI +Y+N PGGS  + +AIYD M  I P V T+CFGVAAS
Sbjct: 66  QVSDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAAS 125

Query: 181 QGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFT 240
            GA LL+GG KG R A+PNSRIMIHQP  G  G   ++  Q  E +  +  ++ + A  T
Sbjct: 126 MGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHT 185

Query: 241 GQPVEKVQQFTERDRFLSVSEALEFGLIDGVLE 273
           GQP+EK+ + TERD FLS SEA+E+GLID V++
Sbjct: 186 GQPLEKINEDTERDYFLSPSEAVEYGLIDKVIK 218

[Close]

BLAST of Sed0001211 vs. ExPASy Swiss-Prot
Match: P54415 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-41
Identity = 83/173 (47.98%), Postives = 117/173 (67.63%), Query Frame = 0


Query: 100 DLSSVLFRNRIIFIGQPINSIVAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIY 159
           D+ S L R RIIF+G+P+ S VA R+++QL+ L   D   DI +Y+N PGGS Y  L I+
Sbjct: 17  DIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIF 76

Query: 160 DCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRR 219
           D M+ I+P V TVC G+AAS GA LLA G KG R ++ +SRIMIHQP  G  G  +D+  
Sbjct: 77  DTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEI 136

Query: 220 QVNEAVQSRHKVDMMYAAFTGQPVEKVQQFTERDRFLSVSEALEFGLIDGVLE 273
           Q NE +  +  ++ + A  TGQP+ +++  T+RD F+S SEA+E+GLID V++
Sbjct: 137 QANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVID 189

[Close]

BLAST of Sed0001211 vs. ExPASy Swiss-Prot
Match: Q5N665 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-41
Identity = 83/173 (47.98%), Postives = 117/173 (67.63%), Query Frame = 0


Query: 100 DLSSVLFRNRIIFIGQPINSIVAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIY 159
           D+ S L R RIIF+G+P+ S VA R+++QL+ L   D   DI +Y+N PGGS Y  L I+
Sbjct: 17  DIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIF 76

Query: 160 DCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRR 219
           D M+ I+P V TVC G+AAS GA LLA G KG R ++ +SRIMIHQP  G  G  +D+  
Sbjct: 77  DTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEI 136

Query: 220 QVNEAVQSRHKVDMMYAAFTGQPVEKVQQFTERDRFLSVSEALEFGLIDGVLE 273
           Q NE +  +  ++ + A  TGQP+ +++  T+RD F+S SEA+E+GLID V++
Sbjct: 137 QANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVID 189

[Close]

BLAST of Sed0001211 vs. ExPASy TrEMBL
Match: A0A6J1KXP8 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111499710 PE=3 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.9e-132
Identity = 247/275 (89.82%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           M  ASAF ASL  SV+SHNR SS+PQ SRRNS RSIVS++PR YGDSSTIGLSSKT GTP
Sbjct: 1   MAVASAFTASLCFSVSSHNRASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGTP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL D DFLHTSTSYGPI+A KKGNPPIMP VMTP GPL+LSSVLFRNRIIFIGQPINS 
Sbjct: 61  LNL-DEDFLHTSTSYGPIMA-KKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSA 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE +DILVYLNCPGGSTYS+LAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QP+EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273

[Close]

BLAST of Sed0001211 vs. ExPASy TrEMBL
Match: A0A6J1G8P9 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111451769 PE=3 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.5e-131
Identity = 247/275 (89.82%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           MV ASAF ASL  SV+SHNR SS+PQ SRRNS RSIVS++PR YGDSSTIGLSSKT G P
Sbjct: 1   MVVASAFTASLCFSVSSHNRASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGLSSKTVGAP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL D DFLHTSTSYGPI+A KKGNPPIMP VMTP GPL+LSSVLFRNRIIFIGQPINS 
Sbjct: 61  LNL-DEDFLHTSTSYGPIMA-KKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSN 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE +DILVYLNCPGGSTYS+LAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QP+EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273

[Close]

BLAST of Sed0001211 vs. ExPASy TrEMBL
Match: A0A1S3C7Y1 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103497498 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.4e-131
Identity = 246/275 (89.45%), Postives = 257/275 (93.45%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           MV AS F ASL+ SV S NRTSS+PQ SRR S RSIVS+LPR YGDSSTIGLSSKTNG P
Sbjct: 1   MVVASPFTASLTFSVASLNRTSSIPQLSRRYSHRSIVSALPRPYGDSSTIGLSSKTNGAP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL+D+DFL TSTSYGPI A +KGNPPIMP VMTP GPLDLSSVLFRNRIIFIGQP+NS 
Sbjct: 61  LNLDDKDFLLTSTSYGPIEA-RKGNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNST 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE+ADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ
Sbjct: 121 VAQRVISQLVTLATIDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           Q +EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 QSIEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274

[Close]

BLAST of Sed0001211 vs. ExPASy TrEMBL
Match: A0A6J1D5M0 (ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN=LOC111017253 PE=3 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.5e-129
Identity = 240/274 (87.59%), Postives = 258/274 (94.16%), Query Frame = 0


Query: 2   VAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTPI 61
           +AASAF ASL+ SV+S+NRTSS+P  SRRNS RS+VS+LPR YGDSSTIGLSSK+   P+
Sbjct: 1   MAASAFTASLTFSVSSNNRTSSIPPLSRRNSQRSVVSTLPRPYGDSSTIGLSSKSIRAPL 60

Query: 62  NLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSIV 121
           +L+D+DFLH STSY PI A KKGNPPIMP VMTP GPLDLSSVLFRNRIIFIGQP+NSIV
Sbjct: 61  SLDDKDFLHASTSYRPIEA-KKGNPPIMPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSIV 120

Query: 122 AQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQG 181
           AQRVISQLVTLATIDE+ADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQG
Sbjct: 121 AQRVISQLVTLATIDEDADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQG 180

Query: 182 ALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQ 241
           ALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVD M++AFTGQ
Sbjct: 181 ALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDKMFSAFTGQ 240

Query: 242 PVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           P+EKVQQ+TERDRFLSVSEALEFGLIDGVLETEY
Sbjct: 241 PLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 273

[Close]

BLAST of Sed0001211 vs. ExPASy TrEMBL
Match: A0A0A0LLX4 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_2G245460 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.9e-124
Identity = 230/275 (83.64%), Postives = 250/275 (90.91%), Query Frame = 0


Query: 1   MVAASAFPASLSLSVTSHNRTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTP 60
           MV AS F ASLS SV S+NR SS+ Q SRRNS RSIVS+ PR YGDSSTIGLSSKTNG P
Sbjct: 1   MVVASPFTASLSFSVASNNRASSISQLSRRNSHRSIVSAFPRPYGDSSTIGLSSKTNGAP 60

Query: 61  INLEDRDFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSI 120
           +NL+D+DFL TSTSY PIVA ++ NPP+MP VMTP GPLDLSSVLFRNRIIFIGQPINS 
Sbjct: 61  LNLDDKDFLRTSTSYEPIVA-RRDNPPVMPAVMTPGGPLDLSSVLFRNRIIFIGQPINST 120

Query: 121 VAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQ 180
           VAQRVISQLVTLATIDE+ADILVYLNCPGGSTYS+LAIYDCMSWIKPKVGTVCFG+ ASQ
Sbjct: 121 VAQRVISQLVTLATIDEDADILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGIVASQ 180

Query: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTG 240
           GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGG VEDVRRQVNEAVQSR+K++ MYAAFTG
Sbjct: 181 GALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGDVEDVRRQVNEAVQSRNKIEKMYAAFTG 240

Query: 241 QPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           Q +E +QQ+ +RDRFLSVSEAL+FGLIDGVLETEY
Sbjct: 241 QSIETIQQYIDRDRFLSVSEALDFGLIDGVLETEY 274

[Close]

BLAST of Sed0001211 vs. TAIR 10
Match: AT1G11750.1 (CLP protease proteolytic subunit 6 )

HSP 1 Score: 384.4 bits (986), Expect = 7.6e-107
Identity = 197/269 (73.23%), Postives = 228/269 (84.76%), Query Frame = 0


Query: 8   PASLSLSVTSHN-RTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTPINLEDR 67
           P  LS S  + N + +S    ++RN +R IVS+L   YGDS   GLSS  +G+PI ++++
Sbjct: 9   PLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNK 68

Query: 68  DFLHTSTSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSIVAQRVI 127
                +  +G I A KKGNPP+MP VMTP GPLDLSSVLFRNRIIFIGQPIN+ VAQRVI
Sbjct: 69  -----APRFGVIEA-KKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVI 128

Query: 128 SQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLA 187
           SQLVTLA+ID+ +DIL+YLNCPGGSTYSVLAIYDCMSWIKPKVGTV FGVAASQGALLLA
Sbjct: 129 SQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQGALLLA 188

Query: 188 GGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPVEKV 247
           GGEKGMRYAMPN+R+MIHQPQ+GCGGHVEDVRRQVNEA+++R K+D MYAAFTGQP+EKV
Sbjct: 189 GGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTGQPLEKV 248

Query: 248 QQFTERDRFLSVSEALEFGLIDGVLETEY 276
           QQ+TERDRFLS SEALEFGLIDG+LETEY
Sbjct: 249 QQYTERDRFLSASEALEFGLIDGLLETEY 271

[Close]

BLAST of Sed0001211 vs. TAIR 10
Match: AT1G11750.2 (CLP protease proteolytic subunit 6 )

HSP 1 Score: 384.0 bits (985), Expect = 9.9e-107
Identity = 198/281 (70.46%), Postives = 231/281 (82.21%), Query Frame = 0


Query: 8   PASLSLSVTSHN-RTSSLPQFSRRNSLRSIVSSLPRSYGDSSTIGLSSKTNGTPINLEDR 67
           P  LS S  + N + +S    ++RN +R IVS+L   YGDS   GLSS  +G+PI ++++
Sbjct: 9   PLGLSFSSRTRNPKPTSFLSHNQRNPIRRIVSALQSPYGDSLKAGLSSNVSGSPIKIDNK 68

Query: 68  ----------DFLHTSTSY--GPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIG 127
                     + L +ST Y    ++  KKGNPP+MP VMTP GPLDLSSVLFRNRIIFIG
Sbjct: 69  APSSLPLPILNILKSSTVYFIFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIG 128

Query: 128 QPINSIVAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCF 187
           QPIN+ VAQRVISQLVTLA+ID+ +DIL+YLNCPGGSTYSVLAIYDCMSWIKPKVGTV F
Sbjct: 129 QPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAF 188

Query: 188 GVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMM 247
           GVAASQGALLLAGGEKGMRYAMPN+R+MIHQPQ+GCGGHVEDVRRQVNEA+++R K+D M
Sbjct: 189 GVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRM 248

Query: 248 YAAFTGQPVEKVQQFTERDRFLSVSEALEFGLIDGVLETEY 276
           YAAFTGQP+EKVQQ+TERDRFLS SEALEFGLIDG+LETEY
Sbjct: 249 YAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLETEY 289

[Close]

BLAST of Sed0001211 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-39
Identity = 88/200 (44.00%), Postives = 122/200 (61.00%), Query Frame = 0


Query: 72  STSYGPIVANKKGNPPIMPGVMTPAGPLDLSSVLFRNRIIFIGQPINSIVAQRVISQLVT 131
           S+ Y P  A  +G PP     M       + S LF+ RII  G  ++  +A  +++QL+ 
Sbjct: 91  SSPYFPAYAQGQGPPP-----MVQERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLY 150

Query: 132 LATIDENADILVYLNCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKG 191
           L  +D   DI++Y+N PGGS  + +AI+D M  I+P V TVC G+AAS GA LL+ G KG
Sbjct: 151 LDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKG 210

Query: 192 MRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPVEKVQQFTE 251
            RY++PNSRIMIHQP  G  G   D+  Q NE +  +  ++   A  TGQ +EK+ Q T+
Sbjct: 211 KRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTD 270

Query: 252 RDRFLSVSEALEFGLIDGVL 272
           RD F+S  EA E+GLIDGV+
Sbjct: 271 RDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Sed0001211 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 )

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-38
Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 99  LDLSSVLFRNRIIFIGQPINSIVAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAI 158
           LD +++L R RI+F+G  ++ + A  VISQL+ L   D   DI +++N PGGS  + + I
Sbjct: 84  LDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGI 143

Query: 159 YDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVR 218
           YD M   K  V TVC G+AAS GA LLA G KG RY MPNS++MIHQP    GG   ++ 
Sbjct: 144 YDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMS 203

Query: 219 RQVNEAVQSRHKVDMMYAAFTGQPVEKVQQFTERDRFLSVSEALEFGLIDGVLE 273
            ++ E +  + K++ +++  TG+P  +++  T+RD FL+  EA E+GLID V++
Sbjct: 204 IRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVID 257

[Close]

BLAST of Sed0001211 vs. TAIR 10
Match: AT5G45390.1 (CLP protease P4 )

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-36
Identity = 72/173 (41.62%), Postives = 110/173 (63.58%), Query Frame = 0


Query: 100 DLSSVLFRNRIIFIGQPINSIVAQRVISQLVTLATIDENADILVYLNCPGGSTYSVLAIY 159
           D+  +L R RI+F+G  I+  VA  ++SQL+ L   D   DI +++N PGGS  + +AIY
Sbjct: 79  DVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMAIY 138

Query: 160 DCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRR 219
           D +  ++  V T+  G+AAS  +++L  G KG R+AMPN+RIMIHQP  G  G   DV  
Sbjct: 139 DVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEI 198

Query: 220 QVNEAVQSRHKVDMMYAAFTGQPVEKVQQFTERDRFLSVSEALEFGLIDGVLE 273
           Q  E + +++ V  + A  T +  E+V +  +RDR++S  EA+E+GLIDGV++
Sbjct: 199 QAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVID 251

The following BLAST results are available for this feature:

BLAST of Sed0001211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902836.1	9.9e-133	89.45	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Beni...	[more]
XP_023007112.1	1.4e-131	89.82	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic [Cucurbita maxim...	[more]
XP_022948075.1	3.2e-131	89.82	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic [Cucurbita mosch...	[more]
XP_008457934.1	7.1e-131	89.45	PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isofo...	[more]
KAG6605088.1	1.6e-130	89.45	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic, partial [Cucurb...	[more]

BLAST of Sed0001211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAA2	1.1e-105	73.23	ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis t...	[more]
Q59993	8.3e-42	47.34	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PC...	[more]
Q317Y6	1.4e-41	44.13	ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (str...	[more]
P54415	4.1e-41	47.98	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (str...	[more]
Q5N665	4.1e-41	47.98	ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain AT...	[more]

BLAST of Sed0001211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXP8	6.9e-132	89.82	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1G8P9	1.5e-131	89.82	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A1S3C7Y1	3.4e-131	89.45	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1D5M0	5.5e-129	87.59	ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0LLX4	6.9e-124	83.64	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of Sed0001211 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11750.1	7.6e-107	73.23	CLP protease proteolytic subunit 6	[more]
AT1G11750.2	9.9e-107	70.46	CLP protease proteolytic subunit 6	[more]
AT1G02560.1	1.0e-39	44.00	nuclear encoded CLP protease 5	[more]
AT1G66670.1	2.6e-38	43.10	CLP protease proteolytic subunit 3	[more]
AT5G45390.1	1.8e-36	41.62	CLP protease P4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 100..115 score: 47.19 coord: 171..188 score: 62.5 coord: 192..211 score: 55.75 coord: 249..268 score: 53.38 coord: 140..160 score: 51.9
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 88..274 score: 32.885345
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 100..270 e-value: 2.19793E-85 score: 250.822
None	No IPR available	GENE3D	3.90.226.10		coord: 83..275 e-value: 1.1E-60 score: 206.7
None	No IPR available	PANTHER	PTHR10381:SF8	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC	coord: 12..275
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 100..273 e-value: 9.4E-65 score: 217.9
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 12..275
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 193..206
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 98..273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0001211.1	Sed0001211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity