Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAAATTTAATTCAACGGGTACGGAGAGAGAAATTAATCTCACCTGGGTTGTCAGCGAAGAAACGGAAGGCGATCCAGCCGGCGGCGGGAACGCCGGCGGTGTTCCTCTCAACAGGGTCAACAAGATTGAAGTTAGCCGGATCTTTATTGGGGTCAAAATTTCCAAAACCTTCTCCAACTATGAAGAAATTATATCCATGAAGATGAAGAGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACCACCTCCACACTCGCATTGAACGGCAACACCACCAAACTCGTACTGTTACTCACAACCGTATTATTCGGCGGCGTTCCGGTATAGTTGAACGGAAACATCGGCCGCGCCGGGAAATCAGTCCGGTAAACCCCATTAGCCCGGCGGGAGTAATAGGCTTGCATAATCGCCGTCGACGGAAGGGCAAAAGAGACATTGTTGATAGAGGCAGCAAATTTTGTGCCATTGGGACCTTGACACGTGGCGTTTTTGGGGCAAGGGGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCTTGTCCACCGTTCGGGGAACGTTAACAGGGAATTTGGCGGTGGCTAGAGACCGTAATTTTCTGGAGAAATTAGCGACGAAATTGGTGTCGTTAATAGCGGGGAGATTGGGAATTAGAGTTGTCGGAATTGGAGTGGGCGGAGAGTGGCCGTAATGGAGGATTCCGACAGTGGTGGAATTGTCGAAAGTGCCCTGGCCGGTGAAGTAAGGGCGAGCGGCCATGAGGAAAGTGGAATTAACGGTGAAATTGGGATTGGTTTTGAGAAGGACGTTGGAGGTCTGGCCAGGGCTGAGCAATACGACGTCGGTTTGGAAGGGCTTGACGTAGGAGGCGTCGACATCGACGACGGTGAGGGAGTGGTTGGCGATGCTGAAGAAAAGTTCATCGTTGAGTGCAGCGTTGATCAATCGGAGTAAGTATGTTTTTCCTGCCTTCACCTTTAATTTGAATGTGTCTGAAATTAACAATGCCAACAATTTAATTCCATTTTACTTAAATAAAATTGTAGTCACAAAAGTATTAAAAAGTTTTCAATAGATGCCTAATCAATATATGGTTCGAATTTCTTAATCCATTATACTCAAAAAGTTGTTAAATAGATGCCTGAACGTCTAATTAATTTTTATATTTCTATTTCAATATTTTTCTGAGAAATTATTTGTCACGATTAGTTATTAGCGTAAACAAAATGTGAAGAACATATTACACACACAATAAAAAGTAAGTTATTAAAGAATGGAGAGTTGGATGAGCTTTTAAAAAGAATGGAATTTCAGGAATAGTGAGAGTACCTTTAGAAGAGCAGTTATAGAGAAGGCCGGGAAGTCCATTAATGGTGTAAGCATCAGAAACGTTAGGCCCTCCTCCCGTCTGCAGAGCTTGTTGAATCACACTCTCTGGGTTCACGTTAAACCACTCTCCTGCACAAAAACCACGTCGCTTCACTCCATATCCAATCTAATCCATTATCCCAAATTCATTAATCAACTCACCCAAAACAATTGGGACTTCTTTGTGGGGCTTCTCAAAAGGGTAAGATTCGTTCCGGCGAGGGAGGATTATAATTGGGCCGTAAATCGTAACCCTGAGCCACGAGATGTGGGCATGCCAAAGCAGACTTCCTCTCTGCCCCTTGAGGGTGAAATTGTAAGTGTACGATTGGCCGGTTTGGATCGGGCATTGGGTCACGTAAGCCGGTCCGTCCGCCCAACCAGTTCGGAGCTGGCGGACGCCGTGCCAGTGGATGGTGACATTCTCGGCCACGTGGTTGGTGACCTTGATCAGGACTCGGTCGCCTTCTCTAGCCACTAA
mRNA sequence
CCAAAATTTAATTCAACGGGTACGGAGAGAGAAATTAATCTCACCTGGGTTGTCAGCGAAGAAACGGAAGGCGATCCAGCCGGCGGCGGGAACGCCGGCGGTGTTCCTCTCAACAGGGTCAACAAGATTGAAGTTAGCCGGATCTTTATTGGGGTCAAAATTTCCAAAACCTTCTCCAACTATGAAGAAATTATATCCATGAAGATGAAGAGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACCACCTCCACACTCGCATTGAACGGCAACACCACCAAACTCGTACTGTTACTCACAACCGTATTATTCGGCGGCGTTCCGGTATAGTTGAACGGAAACATCGGCCGCGCCGGGAAATCAGTCCGGTAAACCCCATTAGCCCGGCGGGAGTAATAGGCTTGCATAATCGCCGTCGACGGAAGGGCAAAAGAGACATTGTTGATAGAGGCAGCAAATTTTGTGCCATTGGGACCTTGACACGTGGCGTTTTTGGGGCAAGGGGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCTTGTCCACCGTTCGGGGAACGTTAACAGGGAATTTGGCGGTGGCTAGAGACCGTAATTTTCTGGAGAAATTAGCGACGAAATTGGTGTCGTTAATAGCGGGGAGATTGGGAATTAGAGTTGTCGGAATTGGAGTGGGCGGAGAGTGGCCGTAATGGAGGATTCCGACAGTGGTGGAATTGTCGAAAGTGCCCTGGCCGGTGAAGTAAGGGCGAGCGGCCATGAGGAAAGTGGAATTAACGGTGAAATTGGGATTGGTTTTGAGAAGGACGTTGGAGGTCTGGCCAGGGCTGAGCAATACGACGTCGGTTTGGAAGGGCTTGACGTAGGAGGCGTCGACATCGACGACGGTGAGGGAGTGGTTGGCGATGCTGAAGAAAAGTTCATCGTTGAGTGCAGCGTTGATCAATCGGAGAATAGTGAGAGTACCTTTAGAAGAGCAGTTATAGAGAAGGCCGGGAAGTCCATTAATGGTGTAAGCATCAGAAACGTTAGGCCCTCCTCCCGTCTGCAGAGCTTGTTGAATCACACTCTCTGGGTTCACGTTAAACCACTCTCCTGCACAAAAACCACGTCGCTTCACTCCATATCCAATCTAATCCATTATCCCAAATTCATTAATCAACTCACCCAAAACAATTGGGACTTCTTTGTGGGGCTTCTCAAAAGGGTAAGATTCGTTCCGGCGAGGGAGGATTATAATTGGGCCGTAAATCGTAACCCTGAGCCACGAGATGTGGGCATGCCAAAGCAGACTTCCTCTCTGCCCCTTGAGGGTGAAATTGTAAGTGTACGATTGGCCGGTTTGGATCGGGCATTGGGTCACGTAAGCCGGTCCGTCCGCCCAACCAGTTCGGAGCTGGCGGACGCCGTGCCAGTGGATGGTGACATTCTCGGCCACGTGGTTGGTGACCTTGATCAGGACTCGGTCGCCTTCTCTAGCCACTAA
Coding sequence (CDS)
ATGGAGGATTCCGACAGTGGTGGAATTGTCGAAAGTGCCCTGGCCGGTGAAGTAAGGGCGAGCGGCCATGAGGAAAGTGGAATTAACGGTGAAATTGGGATTGGTTTTGAGAAGGACGTTGGAGGTCTGGCCAGGGCTGAGCAATACGACGTCGGTTTGGAAGGGCTTGACGTAGGAGGCGTCGACATCGACGACGGTGAGGGAGTGGTTGGCGATGCTGAAGAAAAGTTCATCGTTGAGTGCAGCGTTGATCAATCGGAGAATAGTGAGAGTACCTTTAGAAGAGCAGTTATAGAGAAGGCCGGGAAGTCCATTAATGGTGTAAGCATCAGAAACGTTAGGCCCTCCTCCCGTCTGCAGAGCTTGTTGAATCACACTCTCTGGGTTCACGTTAAACCACTCTCCTGCACAAAAACCACGTCGCTTCACTCCATATCCAATCTAATCCATTATCCCAAATTCATTAATCAACTCACCCAAAACAATTGGGACTTCTTTGTGGGGCTTCTCAAAAGGGTAAGATTCGTTCCGGCGAGGGAGGATTATAATTGGGCCGTAAATCGTAACCCTGAGCCACGAGATGTGGGCATGCCAAAGCAGACTTCCTCTCTGCCCCTTGAGGGTGAAATTGTAAGTGTACGATTGGCCGGTTTGGATCGGGCATTGGGTCACGTAAGCCGGTCCGTCCGCCCAACCAGTTCGGAGCTGGCGGACGCCGTGCCAGTGGATGGTGACATTCTCGGCCACGTGGTTGGTGACCTTGATCAGGACTCGGTCGCCTTCTCTAGCCACTAA
Protein sequence
MEDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGVDIDDGEGVVGDAEEKFIVECSVDQSENSESTFRRAVIEKAGKSINGVSIRNVRPSSRLQSLLNHTLWVHVKPLSCTKTTSLHSISNLIHYPKFINQLTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAGLDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFSSH
Homology
BLAST of CcUC10G206560 vs. NCBI nr
Match:
GER43513.1 (uroporphyrinogen decarboxylase [Striga asiatica])
HSP 1 Score: 100.5 bits (249), Expect = 2.3e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0
Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
LT+ N DF VG L+RVR V ED + V R PEPRDVG+P++ S+L EIV++ L
Sbjct: 2 LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61
Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
LDRALG+V R + P++++L ++VPV G+I+G ++GD + +VAFS
Sbjct: 62 LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDIIGDFYKQTVAFS 105
BLAST of CcUC10G206560 vs. NCBI nr
Match:
GER47234.1 (uroporphyrinogen decarboxylase [Striga asiatica])
HSP 1 Score: 99.8 bits (247), Expect = 3.8e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0
Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
LT+ N DF VG L+RVR V ED + V R PEPRDVG+P++ S+L EIV++ L
Sbjct: 2 LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61
Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
LDRALG+V R + P++++L ++VPV G+I+G ++GD + +VAFS
Sbjct: 62 LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDMIGDFYKQTVAFS 105
BLAST of CcUC10G206560 vs. NCBI nr
Match:
GER35163.1 ((Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB [Striga asiatica])
HSP 1 Score: 75.1 bits (183), Expect = 1.0e-09
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0
Query: 2 EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
ED++ GG+VE L GEV + H G+ G +G G E+DVGGL ++ DV +EGL V GV
Sbjct: 122 EDAEDGGVVERTLPGEVGSRCHWVGGVCG-VGFGAEEDVGGLTWRDEEDVRVEGLHVDGV 181
Query: 62 DIDDGEGVVGDAEEKFIVECSVDQSE 88
+ D +GV G+AEE+ +V+ SVDQ+E
Sbjct: 182 GLHDSDGVAGNAEEELVVQGSVDQTE 206
BLAST of CcUC10G206560 vs. NCBI nr
Match:
GFZ10976.1 (laccase 17 [Actinidia rufa])
HSP 1 Score: 73.6 bits (179), Expect = 2.9e-09
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 0
Query: 2 EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
E S +G IVESALA E+ AS HEE G+ + G+GFEK + GLA ++ V EG D+ GV
Sbjct: 126 EYSGNGRIVESALASEIWASHHEEGGV-WQGGLGFEKHICGLAWSDYNYVCDEGFDIDGV 185
Query: 62 DIDDGEGVVGDAEEKFIVECSVDQSENSESTFRRAVIEKAGKSI 106
D GVVG+AEE+FI++ SVD+ E+ + +A K +
Sbjct: 186 GFYDSNGVVGNAEEEFIIQGSVDEPEHPNTALLQAHFSNQSKGV 228
BLAST of CcUC10G206560 vs. NCBI nr
Match:
RRT60960.1 (hypothetical protein B296_00018371 [Ensete ventricosum])
HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 0
Query: 150 HYPKFINQL---TQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPL 209
H +N+L TQ+ DFF+ + + V +D N A+NR+ EPRDV +P Q +SLP
Sbjct: 73 HIMCLMNELRATTQDQDDFFMRGGEGIGDVEFGKDDNGAMNRSSEPRDVSVPPQRASLPC 132
Query: 210 EGEIVSVRLAGLDRALGHVSRSVRPTSSELADAVP 242
EGE+V V LA L+RAL V RS+ P +L +++P
Sbjct: 133 EGEVVHVVLAWLNRALRDVRRSISPARPQLPNSMP 167
BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match:
A0A5A7QDX0 (Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_20370 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 1.1e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0
Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
LT+ N DF VG L+RVR V ED + V R PEPRDVG+P++ S+L EIV++ L
Sbjct: 2 LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61
Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
LDRALG+V R + P++++L ++VPV G+I+G ++GD + +VAFS
Sbjct: 62 LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDIIGDFYKQTVAFS 105
BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match:
A0A5A7QPR8 (Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_24322 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0
Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
LT+ N DF VG L+RVR V ED + V R PEPRDVG+P++ S+L EIV++ L
Sbjct: 2 LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61
Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
LDRALG+V R + P++++L ++VPV G+I+G ++GD + +VAFS
Sbjct: 62 LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDMIGDFYKQTVAFS 105
BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match:
A0A5A7PQL4 ((Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB OS=Striga asiatica OX=4170 GN=STAS_11425 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 4.9e-10
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0
Query: 2 EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
ED++ GG+VE L GEV + H G+ G +G G E+DVGGL ++ DV +EGL V GV
Sbjct: 122 EDAEDGGVVERTLPGEVGSRCHWVGGVCG-VGFGAEEDVGGLTWRDEEDVRVEGLHVDGV 181
Query: 62 DIDDGEGVVGDAEEKFIVECSVDQSE 88
+ D +GV G+AEE+ +V+ SVDQ+E
Sbjct: 182 GLHDSDGVAGNAEEELVVQGSVDQTE 206
BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match:
A0A7J0GJJ4 (Laccase 17 OS=Actinidia rufa OX=165716 GN=Acr_22g0003740 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 0
Query: 2 EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
E S +G IVESALA E+ AS HEE G+ + G+GFEK + GLA ++ V EG D+ GV
Sbjct: 126 EYSGNGRIVESALASEIWASHHEEGGV-WQGGLGFEKHICGLAWSDYNYVCDEGFDIDGV 185
Query: 62 DIDDGEGVVGDAEEKFIVECSVDQSENSESTFRRAVIEKAGKSI 106
D GVVG+AEE+FI++ SVD+ E+ + +A K +
Sbjct: 186 GFYDSNGVVGNAEEEFIIQGSVDEPEHPNTALLQAHFSNQSKGV 228
BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match:
A0A426ZAD8 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00018371 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 5.4e-09
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 0
Query: 150 HYPKFINQL---TQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPL 209
H +N+L TQ+ DFF+ + + V +D N A+NR+ EPRDV +P Q +SLP
Sbjct: 73 HIMCLMNELRATTQDQDDFFMRGGEGIGDVEFGKDDNGAMNRSSEPRDVSVPPQRASLPC 132
Query: 210 EGEIVSVRLAGLDRALGHVSRSVRPTSSELADAVP 242
EGE+V V LA L+RAL V RS+ P +L +++P
Sbjct: 133 EGEVVHVVLAWLNRALRDVRRSISPARPQLPNSMP 167
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| GER43513.1 | 2.3e-17 | 49.52 | uroporphyrinogen decarboxylase [Striga asiatica] | [more] |
| GER47234.1 | 3.8e-17 | 49.52 | uroporphyrinogen decarboxylase [Striga asiatica] | [more] |
| GER35163.1 | 1.0e-09 | 48.84 | (Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB [Striga asiatica] | [more] |
| GFZ10976.1 | 2.9e-09 | 45.19 | laccase 17 [Actinidia rufa] | [more] |
| RRT60960.1 | 1.1e-08 | 43.16 | hypothetical protein B296_00018371 [Ensete ventricosum] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7QDX0 | 1.1e-17 | 49.52 | Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_20370 PE=4 SV=... | [more] |
| A0A5A7QPR8 | 1.9e-17 | 49.52 | Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_24322 PE=4 SV=... | [more] |
| A0A5A7PQL4 | 4.9e-10 | 48.84 | (Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB OS=Striga asiatica OX=41... | [more] |
| A0A7J0GJJ4 | 1.4e-09 | 45.19 | Laccase 17 OS=Actinidia rufa OX=165716 GN=Acr_22g0003740 PE=4 SV=1 | [more] |
| A0A426ZAD8 | 5.4e-09 | 43.16 | Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00018371 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
