CcUC10G206560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Uroporphyrinogen decarboxylase
Location	CicolChr10: 33559571 .. 33561425 (-)
RNA-Seq Expression	CcUC10G206560
Synteny	CcUC10G206560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAATTTAATTCAACGGGTACGGAGAGAGAAATTAATCTCACCTGGGTTGTCAGCGAAGAAACGGAAGGCGATCCAGCCGGCGGCGGGAACGCCGGCGGTGTTCCTCTCAACAGGGTCAACAAGATTGAAGTTAGCCGGATCTTTATTGGGGTCAAAATTTCCAAAACCTTCTCCAACTATGAAGAAATTATATCCATGAAGATGAAGAGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACCACCTCCACACTCGCATTGAACGGCAACACCACCAAACTCGTACTGTTACTCACAACCGTATTATTCGGCGGCGTTCCGGTATAGTTGAACGGAAACATCGGCCGCGCCGGGAAATCAGTCCGGTAAACCCCATTAGCCCGGCGGGAGTAATAGGCTTGCATAATCGCCGTCGACGGAAGGGCAAAAGAGACATTGTTGATAGAGGCAGCAAATTTTGTGCCATTGGGACCTTGACACGTGGCGTTTTTGGGGCAAGGGGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCTTGTCCACCGTTCGGGGAACGTTAACAGGGAATTTGGCGGTGGCTAGAGACCGTAATTTTCTGGAGAAATTAGCGACGAAATTGGTGTCGTTAATAGCGGGGAGATTGGGAATTAGAGTTGTCGGAATTGGAGTGGGCGGAGAGTGGCCGTAATGGAGGATTCCGACAGTGGTGGAATTGTCGAAAGTGCCCTGGCCGGTGAAGTAAGGGCGAGCGGCCATGAGGAAAGTGGAATTAACGGTGAAATTGGGATTGGTTTTGAGAAGGACGTTGGAGGTCTGGCCAGGGCTGAGCAATACGACGTCGGTTTGGAAGGGCTTGACGTAGGAGGCGTCGACATCGACGACGGTGAGGGAGTGGTTGGCGATGCTGAAGAAAAGTTCATCGTTGAGTGCAGCGTTGATCAATCGGAGTAAGTATGTTTTTCCTGCCTTCACCTTTAATTTGAATGTGTCTGAAATTAACAATGCCAACAATTTAATTCCATTTTACTTAAATAAAATTGTAGTCACAAAAGTATTAAAAAGTTTTCAATAGATGCCTAATCAATATATGGTTCGAATTTCTTAATCCATTATACTCAAAAAGTTGTTAAATAGATGCCTGAACGTCTAATTAATTTTTATATTTCTATTTCAATATTTTTCTGAGAAATTATTTGTCACGATTAGTTATTAGCGTAAACAAAATGTGAAGAACATATTACACACACAATAAAAAGTAAGTTATTAAAGAATGGAGAGTTGGATGAGCTTTTAAAAAGAATGGAATTTCAGGAATAGTGAGAGTACCTTTAGAAGAGCAGTTATAGAGAAGGCCGGGAAGTCCATTAATGGTGTAAGCATCAGAAACGTTAGGCCCTCCTCCCGTCTGCAGAGCTTGTTGAATCACACTCTCTGGGTTCACGTTAAACCACTCTCCTGCACAAAAACCACGTCGCTTCACTCCATATCCAATCTAATCCATTATCCCAAATTCATTAATCAACTCACCCAAAACAATTGGGACTTCTTTGTGGGGCTTCTCAAAAGGGTAAGATTCGTTCCGGCGAGGGAGGATTATAATTGGGCCGTAAATCGTAACCCTGAGCCACGAGATGTGGGCATGCCAAAGCAGACTTCCTCTCTGCCCCTTGAGGGTGAAATTGTAAGTGTACGATTGGCCGGTTTGGATCGGGCATTGGGTCACGTAAGCCGGTCCGTCCGCCCAACCAGTTCGGAGCTGGCGGACGCCGTGCCAGTGGATGGTGACATTCTCGGCCACGTGGTTGGTGACCTTGATCAGGACTCGGTCGCCTTCTCTAGCCACTAA

mRNA sequence

CCAAAATTTAATTCAACGGGTACGGAGAGAGAAATTAATCTCACCTGGGTTGTCAGCGAAGAAACGGAAGGCGATCCAGCCGGCGGCGGGAACGCCGGCGGTGTTCCTCTCAACAGGGTCAACAAGATTGAAGTTAGCCGGATCTTTATTGGGGTCAAAATTTCCAAAACCTTCTCCAACTATGAAGAAATTATATCCATGAAGATGAAGAGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACCACCTCCACACTCGCATTGAACGGCAACACCACCAAACTCGTACTGTTACTCACAACCGTATTATTCGGCGGCGTTCCGGTATAGTTGAACGGAAACATCGGCCGCGCCGGGAAATCAGTCCGGTAAACCCCATTAGCCCGGCGGGAGTAATAGGCTTGCATAATCGCCGTCGACGGAAGGGCAAAAGAGACATTGTTGATAGAGGCAGCAAATTTTGTGCCATTGGGACCTTGACACGTGGCGTTTTTGGGGCAAGGGGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCTTGTCCACCGTTCGGGGAACGTTAACAGGGAATTTGGCGGTGGCTAGAGACCGTAATTTTCTGGAGAAATTAGCGACGAAATTGGTGTCGTTAATAGCGGGGAGATTGGGAATTAGAGTTGTCGGAATTGGAGTGGGCGGAGAGTGGCCGTAATGGAGGATTCCGACAGTGGTGGAATTGTCGAAAGTGCCCTGGCCGGTGAAGTAAGGGCGAGCGGCCATGAGGAAAGTGGAATTAACGGTGAAATTGGGATTGGTTTTGAGAAGGACGTTGGAGGTCTGGCCAGGGCTGAGCAATACGACGTCGGTTTGGAAGGGCTTGACGTAGGAGGCGTCGACATCGACGACGGTGAGGGAGTGGTTGGCGATGCTGAAGAAAAGTTCATCGTTGAGTGCAGCGTTGATCAATCGGAGAATAGTGAGAGTACCTTTAGAAGAGCAGTTATAGAGAAGGCCGGGAAGTCCATTAATGGTGTAAGCATCAGAAACGTTAGGCCCTCCTCCCGTCTGCAGAGCTTGTTGAATCACACTCTCTGGGTTCACGTTAAACCACTCTCCTGCACAAAAACCACGTCGCTTCACTCCATATCCAATCTAATCCATTATCCCAAATTCATTAATCAACTCACCCAAAACAATTGGGACTTCTTTGTGGGGCTTCTCAAAAGGGTAAGATTCGTTCCGGCGAGGGAGGATTATAATTGGGCCGTAAATCGTAACCCTGAGCCACGAGATGTGGGCATGCCAAAGCAGACTTCCTCTCTGCCCCTTGAGGGTGAAATTGTAAGTGTACGATTGGCCGGTTTGGATCGGGCATTGGGTCACGTAAGCCGGTCCGTCCGCCCAACCAGTTCGGAGCTGGCGGACGCCGTGCCAGTGGATGGTGACATTCTCGGCCACGTGGTTGGTGACCTTGATCAGGACTCGGTCGCCTTCTCTAGCCACTAA

Coding sequence (CDS)

ATGGAGGATTCCGACAGTGGTGGAATTGTCGAAAGTGCCCTGGCCGGTGAAGTAAGGGCGAGCGGCCATGAGGAAAGTGGAATTAACGGTGAAATTGGGATTGGTTTTGAGAAGGACGTTGGAGGTCTGGCCAGGGCTGAGCAATACGACGTCGGTTTGGAAGGGCTTGACGTAGGAGGCGTCGACATCGACGACGGTGAGGGAGTGGTTGGCGATGCTGAAGAAAAGTTCATCGTTGAGTGCAGCGTTGATCAATCGGAGAATAGTGAGAGTACCTTTAGAAGAGCAGTTATAGAGAAGGCCGGGAAGTCCATTAATGGTGTAAGCATCAGAAACGTTAGGCCCTCCTCCCGTCTGCAGAGCTTGTTGAATCACACTCTCTGGGTTCACGTTAAACCACTCTCCTGCACAAAAACCACGTCGCTTCACTCCATATCCAATCTAATCCATTATCCCAAATTCATTAATCAACTCACCCAAAACAATTGGGACTTCTTTGTGGGGCTTCTCAAAAGGGTAAGATTCGTTCCGGCGAGGGAGGATTATAATTGGGCCGTAAATCGTAACCCTGAGCCACGAGATGTGGGCATGCCAAAGCAGACTTCCTCTCTGCCCCTTGAGGGTGAAATTGTAAGTGTACGATTGGCCGGTTTGGATCGGGCATTGGGTCACGTAAGCCGGTCCGTCCGCCCAACCAGTTCGGAGCTGGCGGACGCCGTGCCAGTGGATGGTGACATTCTCGGCCACGTGGTTGGTGACCTTGATCAGGACTCGGTCGCCTTCTCTAGCCACTAA

Protein sequence

MEDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGVDIDDGEGVVGDAEEKFIVECSVDQSENSESTFRRAVIEKAGKSINGVSIRNVRPSSRLQSLLNHTLWVHVKPLSCTKTTSLHSISNLIHYPKFINQLTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAGLDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFSSH

Homology

[Close]

BLAST of CcUC10G206560 vs. NCBI nr
Match: GER43513.1 (uroporphyrinogen decarboxylase [Striga asiatica])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
           LT+ N DF VG L+RVR V   ED +  V R PEPRDVG+P++ S+L    EIV++ L  
Sbjct: 2   LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61

Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
           LDRALG+V R + P++++L ++VPV G+I+G ++GD  + +VAFS
Sbjct: 62  LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDIIGDFYKQTVAFS 105

[Close]

BLAST of CcUC10G206560 vs. NCBI nr
Match: GER47234.1 (uroporphyrinogen decarboxylase [Striga asiatica])

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
           LT+ N DF VG L+RVR V   ED +  V R PEPRDVG+P++ S+L    EIV++ L  
Sbjct: 2   LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61

Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
           LDRALG+V R + P++++L ++VPV G+I+G ++GD  + +VAFS
Sbjct: 62  LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDMIGDFYKQTVAFS 105

[Close]

BLAST of CcUC10G206560 vs. NCBI nr
Match: GER35163.1 ((Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB [Striga asiatica])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-09
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 2   EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
           ED++ GG+VE  L GEV +  H   G+ G +G G E+DVGGL   ++ DV +EGL V GV
Sbjct: 122 EDAEDGGVVERTLPGEVGSRCHWVGGVCG-VGFGAEEDVGGLTWRDEEDVRVEGLHVDGV 181

Query: 62  DIDDGEGVVGDAEEKFIVECSVDQSE 88
            + D +GV G+AEE+ +V+ SVDQ+E
Sbjct: 182 GLHDSDGVAGNAEEELVVQGSVDQTE 206

[Close]

BLAST of CcUC10G206560 vs. NCBI nr
Match: GFZ10976.1 (laccase 17 [Actinidia rufa])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-09
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 2   EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
           E S +G IVESALA E+ AS HEE G+  + G+GFEK + GLA ++   V  EG D+ GV
Sbjct: 126 EYSGNGRIVESALASEIWASHHEEGGV-WQGGLGFEKHICGLAWSDYNYVCDEGFDIDGV 185

Query: 62  DIDDGEGVVGDAEEKFIVECSVDQSENSESTFRRAVIEKAGKSI 106
              D  GVVG+AEE+FI++ SVD+ E+  +   +A      K +
Sbjct: 186 GFYDSNGVVGNAEEEFIIQGSVDEPEHPNTALLQAHFSNQSKGV 228

[Close]

BLAST of CcUC10G206560 vs. NCBI nr
Match: RRT60960.1 (hypothetical protein B296_00018371 [Ensete ventricosum])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 150 HYPKFINQL---TQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPL 209
           H    +N+L   TQ+  DFF+   + +  V   +D N A+NR+ EPRDV +P Q +SLP 
Sbjct: 73  HIMCLMNELRATTQDQDDFFMRGGEGIGDVEFGKDDNGAMNRSSEPRDVSVPPQRASLPC 132

Query: 210 EGEIVSVRLAGLDRALGHVSRSVRPTSSELADAVP 242
           EGE+V V LA L+RAL  V RS+ P   +L +++P
Sbjct: 133 EGEVVHVVLAWLNRALRDVRRSISPARPQLPNSMP 167

[Close]

BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match: A0A5A7QDX0 (Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_20370 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
           LT+ N DF VG L+RVR V   ED +  V R PEPRDVG+P++ S+L    EIV++ L  
Sbjct: 2   LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61

Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
           LDRALG+V R + P++++L ++VPV G+I+G ++GD  + +VAFS
Sbjct: 62  LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDIIGDFYKQTVAFS 105

[Close]

BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match: A0A5A7QPR8 (Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_24322 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17
Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 158 LTQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPLEGEIVSVRLAG 217
           LT+ N DF VG L+RVR V   ED +  V R PEPRDVG+P++ S+L    EIV++ L  
Sbjct: 2   LTEYNGDFLVGFLERVRLVFLGEDDDGPVERGPEPRDVGVPEKGSALAHYREIVNIALPS 61

Query: 218 LDRALGHVSRSVRPTSSELADAVPVDGDILGHVVGDLDQDSVAFS 263
           LDRALG+V R + P++++L ++VPV G+I+G ++GD  + +VAFS
Sbjct: 62  LDRALGYVRRPIGPSTAKLPNSVPV-GNIVGDMIGDFYKQTVAFS 105

[Close]

BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match: A0A5A7PQL4 ((Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB OS=Striga asiatica OX=4170 GN=STAS_11425 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.9e-10
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 2   EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
           ED++ GG+VE  L GEV +  H   G+ G +G G E+DVGGL   ++ DV +EGL V GV
Sbjct: 122 EDAEDGGVVERTLPGEVGSRCHWVGGVCG-VGFGAEEDVGGLTWRDEEDVRVEGLHVDGV 181

Query: 62  DIDDGEGVVGDAEEKFIVECSVDQSE 88
            + D +GV G+AEE+ +V+ SVDQ+E
Sbjct: 182 GLHDSDGVAGNAEEELVVQGSVDQTE 206

[Close]

BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match: A0A7J0GJJ4 (Laccase 17 OS=Actinidia rufa OX=165716 GN=Acr_22g0003740 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 2   EDSDSGGIVESALAGEVRASGHEESGINGEIGIGFEKDVGGLARAEQYDVGLEGLDVGGV 61
           E S +G IVESALA E+ AS HEE G+  + G+GFEK + GLA ++   V  EG D+ GV
Sbjct: 126 EYSGNGRIVESALASEIWASHHEEGGV-WQGGLGFEKHICGLAWSDYNYVCDEGFDIDGV 185

Query: 62  DIDDGEGVVGDAEEKFIVECSVDQSENSESTFRRAVIEKAGKSI 106
              D  GVVG+AEE+FI++ SVD+ E+  +   +A      K +
Sbjct: 186 GFYDSNGVVGNAEEEFIIQGSVDEPEHPNTALLQAHFSNQSKGV 228

[Close]

BLAST of CcUC10G206560 vs. ExPASy TrEMBL
Match: A0A426ZAD8 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00018371 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.4e-09
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 150 HYPKFINQL---TQNNWDFFVGLLKRVRFVPAREDYNWAVNRNPEPRDVGMPKQTSSLPL 209
           H    +N+L   TQ+  DFF+   + +  V   +D N A+NR+ EPRDV +P Q +SLP 
Sbjct: 73  HIMCLMNELRATTQDQDDFFMRGGEGIGDVEFGKDDNGAMNRSSEPRDVSVPPQRASLPC 132

Query: 210 EGEIVSVRLAGLDRALGHVSRSVRPTSSELADAVP 242
           EGE+V V LA L+RAL  V RS+ P   +L +++P
Sbjct: 133 EGEVVHVVLAWLNRALRDVRRSISPARPQLPNSMP 167

The following BLAST results are available for this feature:

BLAST of CcUC10G206560 vs. NCBI nr


Match Name	E-value	Identity	Description
GER43513.1	2.3e-17	49.52	uroporphyrinogen decarboxylase [Striga asiatica]	[more]
GER47234.1	3.8e-17	49.52	uroporphyrinogen decarboxylase [Striga asiatica]	[more]
GER35163.1	1.0e-09	48.84	(Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB [Striga asiatica]	[more]
GFZ10976.1	2.9e-09	45.19	laccase 17 [Actinidia rufa]	[more]
RRT60960.1	1.1e-08	43.16	hypothetical protein B296_00018371 [Ensete ventricosum]	[more]

BLAST of CcUC10G206560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G206560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7QDX0	1.1e-17	49.52	Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_20370 PE=4 SV=...	[more]
A0A5A7QPR8	1.9e-17	49.52	Uroporphyrinogen decarboxylase OS=Striga asiatica OX=4170 GN=STAS_24322 PE=4 SV=...	[more]
A0A5A7PQL4	4.9e-10	48.84	(Dimethylallyl)adenosine tRNAmethylthiotransferase MiaB OS=Striga asiatica OX=41...	[more]
A0A7J0GJJ4	1.4e-09	45.19	Laccase 17 OS=Actinidia rufa OX=165716 GN=Acr_22g0003740 PE=4 SV=1	[more]
A0A426ZAD8	5.4e-09	43.16	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00018371 PE=4 SV=1	[more]

BLAST of CcUC10G206560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC10G206560.1	CcUC10G206560.1	mRNA