CcUC07G128770 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC07G128770
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr07: 341490 .. 341831 (+)
RNA-Seq ExpressionCcUC07G128770
SyntenyCcUC07G128770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTCGTGCACCTACGTCACTCGGCTCGCGCGCAACCTTGCCCCGTTATGTTATGGAAAAATTGAACTTCACAAAGTTCGAAAGAAAGGAATAAAAAAAAGTTTCTCTATGGCCTCCTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGGTAACAAAGAAGAAATCCATAAAAACTGTAGGGGCGGACTGCTCTACATTCAGCCATGCCACTGTGACCCCCAAAGCGATCTTCTTCTAGTTGCAGGACGAAATCCGGCAGCCAGTTGTTGGCTCTAA

mRNA sequence

ATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAAAAGGAATAAAAAAAAGTTTCTCTATGGCCTCCTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGGTAACAAAGAAGAAATCCATAAAAACTGTAGGGGCGGACTGCTCTACATTCAGCCATGCCACTGTGACCCCCAAAGCGATCTTCTTCTAGTTGCAGGACGAAATCCGGCAGCCAGTTGTTGGCTCTAA

Coding sequence (CDS)

ATGAAGCAGCAGGCATCGGTCCGTAGAACCTATAAAAAAGAGATGGTTGTGGCGCGAAAAAGGAATAAAAAAAAGTTTCTCTATGGCCTCCTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGGTAACAAAGAAGAAATCCATAAAAACTGTAGGGGCGGACTGCTCTACATTCAGCCATGCCACTGTGACCCCCAAAGCGATCTTCTTCTAGTTGCAGGACGAAATCCGGCAGCCAGTTGTTGGCTCTAA

Protein sequence

MKQQASVRRTYKKEMVVARKRNKKKFLYGLLVLRHYGFGVDPGNKEEIHKNCRGGLLYIQPCHCDPQSDLLLVAGRNPAASCWL
Homology
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BLAST of CcUC07G128770 vs. NCBI nr
Match: KAG2660525.1 (hypothetical protein PVAP13_1KG446905 [Panicum virgatum])

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-06
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 18  ARKRNKKKFLYGLLVLRHYGFGVDPGNKEEIHKN 52
           +R+R K+KF+Y L VLRHYGFGVDPGNK+ IHKN
Sbjct: 102 SRQRKKEKFIYSLCVLRHYGFGVDPGNKKRIHKN 135

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BLAST of CcUC07G128770 vs. NCBI nr
Match: XP_038981953.1 (uncharacterized protein LOC120110592 [Phoenix dactylifera])

HSP 1 Score: 60.5 bits (145), Expect = 8.2e-06
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 18  ARKRNKKKFLYGLLVLRHYGFGVDPGNKEEIHK 51
           +R+R K+KFLY L VLRHYGFGVDPGNKE IHK
Sbjct: 133 SRQRKKEKFLYSLFVLRHYGFGVDPGNKEGIHK 165

[Close]
BLAST of CcUC07G128770 vs. NCBI nr
Match: GAU19220.1 (hypothetical protein TSUD_199020 [Trifolium subterraneum])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 31  LVLRHYGFGVDPGNKEEIHKNCRGGLLYIQPCHCDPQSDLLLVAGRNPAAS 82
           L L   G  ++P N   + K  RGGLLYIQP H DP+SDLLLVAGRNPAA+
Sbjct: 263 LFLPARGHEMNPENL--LIKRSRGGLLYIQPRHSDPRSDLLLVAGRNPAAA 311

[Close]
BLAST of CcUC07G128770 vs. NCBI nr
Match: XP_040259771.1 (uncharacterized protein LOC109769357 [Aegilops tauschii subsp. strangulata])

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 20  KRNKKKFLYGLLVLRHYGFGVDPGNKEEIHKN 52
           K  K KFLY L VLRHYGFGVDPGNK+ IHKN
Sbjct: 153 KEKKSKFLYSLFVLRHYGFGVDPGNKKGIHKN 184

[Close]
BLAST of CcUC07G128770 vs. ExPASy TrEMBL
Match: A0A2Z6M2V0 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_199020 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.8e-06
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 31  LVLRHYGFGVDPGNKEEIHKNCRGGLLYIQPCHCDPQSDLLLVAGRNPAAS 82
           L L   G  ++P N   + K  RGGLLYIQP H DP+SDLLLVAGRNPAA+
Sbjct: 263 LFLPARGHEMNPENL--LIKRSRGGLLYIQPRHSDPRSDLLLVAGRNPAAA 311

The following BLAST results are available for this feature:
BLAST of CcUC07G128770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG2660525.14.8e-0673.53hypothetical protein PVAP13_1KG446905 [Panicum virgatum][more]
XP_038981953.18.2e-0678.79uncharacterized protein LOC120110592 [Phoenix dactylifera][more]
GAU19220.11.4e-0560.78hypothetical protein TSUD_199020 [Trifolium subterraneum][more]
XP_040259771.13.1e-0578.13uncharacterized protein LOC109769357 [Aegilops tauschii subsp. strangulata][more]
BLAST of CcUC07G128770 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC07G128770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2Z6M2V06.8e-0660.78Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_199020 PE=4 SV... [more]
BLAST of CcUC07G128770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC07G128770.1CcUC07G128770.1mRNA