Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGGTATGTTGGAAATGATGATAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA
mRNA sequence
GATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA
Coding sequence (CDS)
ATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA
Protein sequence
MKEYHKYKILIWLFFKPFEKNRKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKFCPFMERRTQRHIWNGKET
Homology
BLAST of CcUC03G052200 vs. NCBI nr
Match:
XP_038902315.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida])
HSP 1 Score: 60.5 bits (145), Expect = 9.7e-06
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 20 KNRKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKL 79
+ R+ + +++E L+EQERQ+ G+GNMRG+GRN + RRGERIHED+DS VKL
Sbjct: 33 QERRAQQQRVSQEDEGVIDLVEQERQLRGKGNMRGKGRN-NMHPRRGERIHEDRDSGVKL 92
Query: 80 KFCPF 85
K PF
Sbjct: 93 KIPPF 96
BLAST of CcUC03G052200 vs. NCBI nr
Match:
KAA0042451.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 58.2 bits (139), Expect = 4.8e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
++NE L ERQ+GGRGN+RGRGRN +Q RR ER+HED+D VKLK PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVIQPRRMERVHEDRDGGVKLKIPPF 80
BLAST of CcUC03G052200 vs. NCBI nr
Match:
TYK08101.1 (uncharacterized protein E5676_scaffold265G002620 [Cucumis melo var. makuwa])
HSP 1 Score: 57.4 bits (137), Expect = 8.2e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
++NE L ERQ+GGRGN+RGRGRN +Q RR ER+HED+D VKLK PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPF 80
BLAST of CcUC03G052200 vs. NCBI nr
Match:
TYK21797.1 (uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIFV---QARRGERIHEDKDSRVKLKFCPF 85
+++E L ERQ+GGRGNMRGRGRN V Q RR E++HED+D VKLK PF
Sbjct: 48 QEDEGMFDLNAHERQLGGRGNMRGRGRNNLVNVMQPRRMEKVHEDRDGGVKLKIPPF 104
BLAST of CcUC03G052200 vs. NCBI nr
Match:
KAA0047357.1 (uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa] >TYK14035.1 uncharacterized protein E5676_scaffold363G00030 [Cucumis melo var. makuwa])
HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0
Query: 22 RKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKF 81
+++ E +++E L+EQERQVGGR NMRG+GRN +Q RR ER ED+ + +KLK
Sbjct: 24 QQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKI 83
Query: 82 CPF 85
PF
Sbjct: 84 PPF 86
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match:
A0A5A7TLJ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8446G00010 PE=4 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
++NE L ERQ+GGRGN+RGRGRN +Q RR ER+HED+D VKLK PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVIQPRRMERVHEDRDGGVKLKIPPF 80
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match:
A0A5D3C8C6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002620 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 4.0e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
++NE L ERQ+GGRGN+RGRGRN +Q RR ER+HED+D VKLK PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPF 80
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match:
A0A5D3DDM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00010 PE=4 SV=1)
HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIFV---QARRGERIHEDKDSRVKLKFCPF 85
+++E L ERQ+GGRGNMRGRGRN V Q RR E++HED+D VKLK PF
Sbjct: 48 QEDEGMFDLNAHERQLGGRGNMRGRGRNNLVNVMQPRRMEKVHEDRDGGVKLKIPPF 104
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match:
A0A5A7TZH9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00030 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0
Query: 22 RKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKF 81
+++ E +++E L+EQERQVGGR NMRG+GRN +Q RR ER ED+ + +KLK
Sbjct: 24 QQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKI 83
Query: 82 CPF 85
PF
Sbjct: 84 PPF 86
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match:
A0A1S4E1G3 (uncharacterized protein LOC107991521 OS=Cucumis melo OX=3656 GN=LOC107991521 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0
Query: 22 RKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKF 81
+++ E +++E L+EQERQVGGR NMRG+GRN +Q RR ER ED+ + +KLK
Sbjct: 24 QQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKI 83
Query: 82 CPF 85
PF
Sbjct: 84 PPF 86
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038902315.1 | 9.7e-06 | 52.31 | LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida] | [more] |
KAA0042451.1 | 4.8e-05 | 56.14 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
TYK08101.1 | 8.2e-05 | 56.14 | uncharacterized protein E5676_scaffold265G002620 [Cucumis melo var. makuwa] | [more] |
TYK21797.1 | 1.1e-04 | 56.14 | uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa] | [more] |
KAA0047357.1 | 1.8e-04 | 49.21 | uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa] >TYK1... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TLJ3 | 2.3e-05 | 56.14 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... | [more] |
A0A5D3C8C6 | 4.0e-05 | 56.14 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A5D3DDM5 | 5.2e-05 | 56.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TZH9 | 8.8e-05 | 49.21 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A1S4E1G3 | 8.8e-05 | 49.21 | uncharacterized protein LOC107991521 OS=Cucumis melo OX=3656 GN=LOC107991521 PE=... | [more] |
Match Name | E-value | Identity | Description | |