Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGTTTCAACCAAAGAGAAGAGGTCCAGAGTGGAAACAAGGATGGACAGGCCAAACCCTAGGCTCTGTTTCTTCTCCACCACCTCAATTTCTCACCATTTTTGGTATTGTCATTGTCTTGCTTTGGTTTTCTCAGTTCAACACGGGCTATGAAGCTCAAATGAACAAAAATTTTCAGCTGGTTCTTTTCTTGTTGCCCATCTTGGTCATTTTCTTCATGTCTTCATATTCAATTGGTGGACTGATCAACTTCCGACTTCGCCGACCGGCAACCGGGTCAACTCAACGAGGTGCCTCTCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGATTTTGCTTTATTACCAACCCTCATTCCGTTGA
mRNA sequence
ATGGATTGGTTTCAACCAAAGAGAAGAGGTCCAGAGTGGAAACAAGGATGGACAGGCCAAACCCTAGGCTCTGTTTCTTCTCCACCACCTCAATTTCTCACCATTTTTGGTATTGTCATTGTCTTGCTTTGGTTTTCTCAGTTCAACACGGGCTATGAAGCTCAAATGAACAAAAATTTTCAGCTGGTTCTTTTCTTGTTGCCCATCTTGGTCATTTTCTTCATGTCTTCATATTCAATTGGTGGACTGATCAACTTCCGACTTCGCCGACCGGCAACCGGGTCAACTCAACGAGGTGCCTCTCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGATTTTGCTTTATTACCAACCCTCATTCCGTTGA
Coding sequence (CDS)
ATGGATTGGTTTCAACCAAAGAGAAGAGGTCCAGAGTGGAAACAAGGATGGACAGGCCAAACCCTAGGCTCTGTTTCTTCTCCACCACCTCAATTTCTCACCATTTTTGGTATTGTCATTGTCTTGCTTTGGTTTTCTCAGTTCAACACGGGCTATGAAGCTCAAATGAACAAAAATTTTCAGCTGGTTCTTTTCTTGTTGCCCATCTTGGTCATTTTCTTCATGTCTTCATATTCAATTGGTGGACTGATCAACTTCCGACTTCGCCGACCGGCAACCGGGTCAACTCAACGAGGTGCCTCTCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGATTTTGCTTTATTACCAACCCTCATTCCGTTGA
Protein sequence
MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNKNFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILLYYQPSFR
Homology
BLAST of CcUC02G028280 vs. NCBI nr
Match:
KAG7010871.1 (hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 187.2 bits (474), Expect = 8.5e-44
Identity = 96/126 (76.19%), Postives = 107/126 (84.92%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTL-GSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK- 60
M+W +PKRRGPEWKQ WTGQTL GSVSSPPPQ LTIFGIVIVLLWFSQ TGY+ QM++
Sbjct: 1 MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60
Query: 61 --NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILL 120
NFQL+LFLLPILVIFFMSSYS+ GLIN R R ATGS +RGASP TI ILV LIL+LL
Sbjct: 61 ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL 120
Query: 121 YYQPSF 123
Y++PSF
Sbjct: 121 YFRPSF 126
BLAST of CcUC02G028280 vs. NCBI nr
Match:
KGN61894.1 (hypothetical protein Csa_005908 [Cucumis sativus])
HSP 1 Score: 178.3 bits (451), Expect = 4.0e-41
Identity = 93/124 (75.00%), Postives = 99/124 (79.84%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQG--WTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK 60
MD F PKRRGPEWK+G TGQTL SVS PP Q L IFGIVIVLLWFSQFN G+EAQ+N+
Sbjct: 1 MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
Query: 61 NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILLYY 120
+FQL LFLLPI VIFFM SYS LINF RR TG QRGASPWTIAILV LIL+LLYY
Sbjct: 61 SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120
Query: 121 QPSF 123
Q SF
Sbjct: 121 QSSF 124
BLAST of CcUC02G028280 vs. NCBI nr
Match:
KAF3434655.1 (hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis])
HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
M+WF PKRRGPEWKQGWTGQTL S+S+PP LTIFGIVIVLLWFSQ+ TGY+AQ+ +
Sbjct: 1 MEWFYPKRRGPEWKQGWTGQTLTSISAPPLHLLTIFGIVIVLLWFSQY-TGYKAQLQQTT 60
Query: 61 -NFQLVLFLLPILVIFFMSSY-SIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILL 120
NFQL L +LPIL+IFFM+ Y S GG NF+LRRP + G SPW +AIL+ L+L+LL
Sbjct: 61 VNFQLFLMVLPILLIFFMALYSSSGGWFNFQLRRP-EAFHRAGGSPWGVAILLVLLLVLL 120
Query: 121 YYQPSF 123
YQ SF
Sbjct: 121 SYQSSF 124
BLAST of CcUC02G028280 vs. NCBI nr
Match:
PON83413.1 (Transmembrane protein [Trema orientale])
HSP 1 Score: 147.5 bits (371), Expect = 7.5e-32
Identity = 73/127 (57.48%), Postives = 93/127 (73.23%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
M+WF PKRRGP+WKQGWT QT+ S+S+P L IF IV+VLLW SQ+ TGY+AQ+ +
Sbjct: 1 MEWFYPKRRGPQWKQGWTSQTVASISAPSFHLLAIFSIVMVLLWLSQY-TGYKAQLQQTA 60
Query: 61 -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR--GASPWTIAILVPLILIL 120
NFQL +FLLP+L+I FM+SYS GL NFR RRP + + G+SPW +A V L+L+L
Sbjct: 61 VNFQLFMFLLPVLLIVFMASYSSSGLFNFRFRRPRPDTPMQLAGSSPWGVAFFVALLLVL 120
Query: 121 LYYQPSF 123
L YQ SF
Sbjct: 121 LSYQSSF 126
BLAST of CcUC02G028280 vs. NCBI nr
Match:
KAE8008693.1 (hypothetical protein FH972_005182 [Carpinus fangiana])
HSP 1 Score: 147.1 bits (370), Expect = 9.8e-32
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQM---N 60
M+WF KRRGPEWKQGWTGQTLGS+S+PP LTIFGIVIVLLW SQ +T Y+AQ+
Sbjct: 1 MEWFYTKRRGPEWKQGWTGQTLGSISTPPLHLLTIFGIVIVLLWLSQ-STDYKAQLKYTT 60
Query: 61 KNFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR-GASPWTIAILVPLILILL 120
NFQL +FLLPIL+I FM++YS GG + L R S QR G PW +AILV ++L+LL
Sbjct: 61 VNFQLFIFLLPILLILFMAAYSTGGRFHSPLLRSEYESVQRAGGLPWGMAILVVVLLVLL 120
Query: 121 YYQPSF 123
YQ SF
Sbjct: 121 SYQSSF 125
BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match:
A0A0A0LLH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 93/124 (75.00%), Postives = 99/124 (79.84%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQG--WTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK 60
MD F PKRRGPEWK+G TGQTL SVS PP Q L IFGIVIVLLWFSQFN G+EAQ+N+
Sbjct: 1 MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
Query: 61 NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILLYY 120
+FQL LFLLPI VIFFM SYS LINF RR TG QRGASPWTIAILV LIL+LLYY
Sbjct: 61 SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120
Query: 121 QPSF 123
Q SF
Sbjct: 121 QSSF 124
BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match:
A0A2P5ED06 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1)
HSP 1 Score: 147.5 bits (371), Expect = 3.6e-32
Identity = 73/127 (57.48%), Postives = 93/127 (73.23%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
M+WF PKRRGP+WKQGWT QT+ S+S+P L IF IV+VLLW SQ+ TGY+AQ+ +
Sbjct: 1 MEWFYPKRRGPQWKQGWTSQTVASISAPSFHLLAIFSIVMVLLWLSQY-TGYKAQLQQTA 60
Query: 61 -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR--GASPWTIAILVPLILIL 120
NFQL +FLLP+L+I FM+SYS GL NFR RRP + + G+SPW +A V L+L+L
Sbjct: 61 VNFQLFMFLLPVLLIVFMASYSSSGLFNFRFRRPRPDTPMQLAGSSPWGVAFFVALLLVL 120
Query: 121 LYYQPSF 123
L YQ SF
Sbjct: 121 LSYQSSF 126
BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match:
A0A5N6QRB9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005182 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 4.7e-32
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQM---N 60
M+WF KRRGPEWKQGWTGQTLGS+S+PP LTIFGIVIVLLW SQ +T Y+AQ+
Sbjct: 1 MEWFYTKRRGPEWKQGWTGQTLGSISTPPLHLLTIFGIVIVLLWLSQ-STDYKAQLKYTT 60
Query: 61 KNFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR-GASPWTIAILVPLILILL 120
NFQL +FLLPIL+I FM++YS GG + L R S QR G PW +AILV ++L+LL
Sbjct: 61 VNFQLFIFLLPILLILFMAAYSTGGRFHSPLLRSEYESVQRAGGLPWGMAILVVVLLVLL 120
Query: 121 YYQPSF 123
YQ SF
Sbjct: 121 SYQSSF 125
BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match:
B9STD1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0660950 PE=4 SV=1)
HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 74/130 (56.92%), Postives = 94/130 (72.31%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
M+WF P+RRGPEWKQGWTGQTLGS+S PPP L IFGIVI+LLW SQ+ T Y+AQ++
Sbjct: 1 MEWFYPRRRGPEWKQGWTGQTLGSISIPPPPLLVIFGIVILLLWLSQY-TDYKAQLHHSA 60
Query: 61 -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATG-----STQRGASPWTIAILVPLI 120
NFQL LFLLP+L+I ++SYS + FRLR+P +G S + + PW IA V ++
Sbjct: 61 INFQLFLFLLPVLLILLIASYSTNWMPYFRLRQPRSGRESVRSAEGSSQPWGIAAFVAVL 120
Query: 121 LILLYYQPSF 123
L+LL YQ SF
Sbjct: 121 LVLLSYQSSF 129
BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match:
A0A2P5C233 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 3.1e-31
Identity = 74/127 (58.27%), Postives = 92/127 (72.44%), Query Frame = 0
Query: 1 MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
M WF PKRRGP+WKQGWT QT+ SVS+P L IF IV+VLLW SQ+ TG++AQ+ +
Sbjct: 1 MGWFYPKRRGPQWKQGWTSQTVASVSAPSFHLLAIFSIVMVLLWLSQY-TGHKAQLQQTA 60
Query: 61 -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPA--TGSTQRGASPWTIAILVPLILIL 120
NFQL +FLLP+L+I FM+SYS GL NFR RRP T G+SPW +A+ V L+L+L
Sbjct: 61 VNFQLFVFLLPVLLIVFMASYSSCGLFNFRFRRPRPDTPMQPAGSSPWGVAVFVALLLVL 120
Query: 121 LYYQPSF 123
L YQ SF
Sbjct: 121 LSYQSSF 126
BLAST of CcUC02G028280 vs. TAIR 10
Match:
AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 32/106 (30.19%), Postives = 56/106 (52.83%), Query Frame = 0
Query: 22 LGSVSSPPPQFLTIFGIVIVLL---WFSQFNTGYEAQMNKNFQLVLFLLPILVIFFMSSY 81
L +S P P +F +V +L W+ F + E ++ + +LV P+ ++ + +
Sbjct: 12 LDYLSLPNPHLCFLFIVVFFVLSFTWYLNFESIIEDTLD-HLKLVFIFTPLFLLLLVHFF 71
Query: 82 SIGGLINFRLRRPATGSTQR-GASPWTIAILVPLILILLYYQPSFR 124
S GGL +F + P S R G+SPW +A ++ LIL ++ YQ F+
Sbjct: 72 S-GGL-SFYVPWPEQDSIHRAGSSPWGVAAVLVLILFMVSYQSDFQ 114
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7010871.1 | 8.5e-44 | 76.19 | hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KGN61894.1 | 4.0e-41 | 75.00 | hypothetical protein Csa_005908 [Cucumis sativus] | [more] |
KAF3434655.1 | 1.6e-34 | 65.08 | hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis] | [more] |
PON83413.1 | 7.5e-32 | 57.48 | Transmembrane protein [Trema orientale] | [more] |
KAE8008693.1 | 9.8e-32 | 61.90 | hypothetical protein FH972_005182 [Carpinus fangiana] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LLH8 | 1.9e-41 | 75.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1 | [more] |
A0A2P5ED06 | 3.6e-32 | 57.48 | Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1 | [more] |
A0A5N6QRB9 | 4.7e-32 | 61.90 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005182 PE=4 SV=1 | [more] |
B9STD1 | 8.1e-32 | 56.92 | Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0660950 PE=4 SV=1 | [more] |
A0A2P5C233 | 3.1e-31 | 58.27 | Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4... | [more] |
Match Name | E-value | Identity | Description | |
AT5G19875.1 | 8.3e-05 | 30.19 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... | [more] |