Clc04G09050 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G09050
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA topoisomerase 6 subunit A
Location	ClcChr04: 22699596 .. 22700858 (+)
RNA-Seq Expression	Clc04G09050
Synteny	Clc04G09050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACAAGAGAAAGCGCCGGCGATCTCAACTTAATCCCGATGGTGAAGCTCAACTTCCCTTCAAGAGCAGCCTCAAACCTGATTCCGTCATTCTTCAGATTCTCCAAGAGTTCAGTGACTGCTCCACCGCCTCATCTTCCTCTTCATCTAAAACCCTCGACGACCTCGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCTCTTTCGTCCGTGCAGTCCACAATTGAATCTCTGATCCTCAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTTGACGTTCCTTCTCGATCGGCGGCCAACCAATTATACGTTCCGGAGCTCGATCGCATCGTCTTGAAAGACAAAACTGCCCTCCGACCCTACGCCAATATTTCCACTGTCCGGAAAACCACCATTACTACTCGTATTCTTCAGCTTGTCCACCAACTTTGCTTAAAAAACATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACCCAGTCTGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCTAGTCTTAATGTGATTGCTGCAGAGAAGGGGGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGTATGGGAGGAAAAGCAATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCGTACATTAGGTTAGCTGAGGACAGATTTTACAATCGCTTTCCATGCATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACGAGATTGTTCTTGAAGAAGATGAAGATGGAGCTGAAGCTCCCAGTTCTTGCACTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGAATAAGGCCGAGTGATTTGGATAAATATAAGATACCTGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAGAAGAATCCTGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACAAAGCAAAAGGCTGAAATTCAGGCATTGAGCTCATTTGGGTTTCAGTATCTGTCAGAGGTTTATTTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

mRNA sequence

ATGGCCGACAAGAGAAAGCGCCGGCGATCTCAACTTAATCCCGATGGTGAAGCTCAACTTCCCTTCAAGAGCAGCCTCAAACCTGATTCCGTCATTCTTCAGATTCTCCAAGAGTTCAGTGACTGCTCCACCGCCTCATCTTCCTCTTCATCTAAAACCCTCGACGACCTCGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCTCTTTCGTCCGTGCAGTCCACAATTGAATCTCTGATCCTCAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTTGACGTTCCTTCTCGATCGGCGGCCAACCAATTATACGTTCCGGAGCTCGATCGCATCGTCTTGAAAGACAAAACTGCCCTCCGACCCTACGCCAATATTTCCACTGTCCGGAAAACCACCATTACTACTCGTATTCTTCAGCTTGTCCACCAACTTTGCTTAAAAAACATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACCCAGTCTGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCTAGTCTTAATGTGATTGCTGCAGAGAAGGGGGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGTATGGGAGGAAAAGCAATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCGTACATTAGGTTAGCTGAGGACAGATTTTACAATCGCTTTCCATGCATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACGAGATTGTTCTTGAAGAAGATGAAGATGGAGCTGAAGCTCCCAGTTCTTGCACTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGAATAAGGCCGAGTGATTTGGATAAATATAAGATACCTGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAGAAGAATCCTGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACAAAGCAAAAGGCTGAAATTCAGGCATTGAGCTCATTTGGGTTTCAGTATCTGTCAGAGGTTTATTTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

Coding sequence (CDS)

ATGGCCGACAAGAGAAAGCGCCGGCGATCTCAACTTAATCCCGATGGTGAAGCTCAACTTCCCTTCAAGAGCAGCCTCAAACCTGATTCCGTCATTCTTCAGATTCTCCAAGAGTTCAGTGACTGCTCCACCGCCTCATCTTCCTCTTCATCTAAAACCCTCGACGACCTCGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCTCTTTCGTCCGTGCAGTCCACAATTGAATCTCTGATCCTCAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCCTTTGACGTTCCTTCTCGATCGGCGGCCAACCAATTATACGTTCCGGAGCTCGATCGCATCGTCTTGAAAGACAAAACTGCCCTCCGACCCTACGCCAATATTTCCACTGTCCGGAAAACCACCATTACTACTCGTATTCTTCAGCTTGTCCACCAACTTTGCTTAAAAAACATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACCCAGTCTGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCTAGTCTTAATGTGATTGCTGCAGAGAAGGGGGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGTATGGGAGGAAAAGCAATTCCACCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATACTCTTAGTTGAGAAAGATGCTGCGTACATTAGGTTAGCTGAGGACAGATTTTACAATCGCTTTCCATGCATAATTGTGACGGCTAAGGGACAGCCAGATGTGGCCACGAGATTGTTCTTGAAGAAGATGAAGATGGAGCTGAAGCTCCCAGTTCTTGCACTTGTGGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTGGGAATAAGGCCGAGTGATTTGGATAAATATAAGATACCTGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTCAAGAAGAATCCTGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACAAAGCAAAAGGCTGAAATTCAGGCATTGAGCTCATTTGGGTTTCAGTATCTGTCAGAGGTTTATTTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

Protein sequence

MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLSSSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL

Homology

[Close]

BLAST of Clc04G09050 vs. NCBI nr
Match: XP_038881252.1 (DNA topoisomerase 6 subunit A [Benincasa hispida])

HSP 1 Score: 797.7 bits (2059), Expect = 4.7e-227
Identity = 410/420 (97.62%), Postives = 416/420 (99.05%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+ NPDGEAQLPFK SLKPDS ILQIL+EFSD STASSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSEPNPDGEAQLPFKKSLKPDSFILQILKEFSDSSTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIES+ILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. NCBI nr
Match: XP_023544835.1 (DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544836.1 DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544837.1 DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544838.1 DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 796.6 bits (2056), Expect = 1.0e-226
Identity = 407/420 (96.90%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNPDGE QLPFK+SLK DS+ILQIL+EFSDCSTA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPDGEVQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. NCBI nr
Match: XP_022950775.1 (DNA topoisomerase 6 subunit A [Cucurbita moschata] >KAG6603699.1 DNA topoisomerase 6 subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033876.1 DNA topoisomerase 6 subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 796.6 bits (2056), Expect = 1.0e-226
Identity = 407/420 (96.90%), Postives = 416/420 (99.05%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNPDGEAQLPFK+SLK DS+ILQIL+EFSDCSTA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPDGEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. NCBI nr
Match: XP_022143741.1 (DNA topoisomerase 6 subunit A [Momordica charantia])

HSP 1 Score: 794.7 bits (2051), Expect = 4.0e-226
Identity = 406/420 (96.67%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNPD EAQLPFK+ LKPDS ILQI++EF DCSTA SSSSSKTL+DLGLS
Sbjct: 1   MADKRKRRRSELNPDDEAQLPFKNRLKPDSAILQIIKEFGDCSTAPSSSSSKTLEDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           S+CREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  STCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCMKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. NCBI nr
Match: XP_022977345.1 (DNA topoisomerase 6 subunit A [Cucurbita maxima])

HSP 1 Score: 794.7 bits (2051), Expect = 4.0e-226
Identity = 407/420 (96.90%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNPD EAQLPFK+SLK DS+ILQIL+EFSDCSTA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. ExPASy Swiss-Prot
Match: Q9LZ03 (DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1)

HSP 1 Score: 701.8 bits (1810), Expect = 4.6e-201
Identity = 360/429 (83.92%), Postives = 394/429 (91.84%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCS---------TASSSSSS 60
           MADK+KR+RS+   D   +LPFKS L+ D VI ++L+ +   S          +SSSS  
Sbjct: 1   MADKKKRKRSK--DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSKP 60

Query: 61  KTLDDLGLSSSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVP 120
            TL DL LSSSCREV DLSLSSVQ+ IE++I++IARSIL+G+GF+F VPSR+A+NQLYVP
Sbjct: 61  LTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVP 120

Query: 121 ELDRIVLKDKTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQD 180
           ELDRIVLKDK+ LRP+A++S+VRKTTITTRIL L+HQLCL+NIHVTKRDLFYTDVKLFQD
Sbjct: 121 ELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQD 180

Query: 181 QTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240
           QTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN
Sbjct: 181 QTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240

Query: 241 IDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKME 300
           IDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKME
Sbjct: 241 IDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300

Query: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360
           LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC
Sbjct: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360

Query: 361 RLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLP 420
           RLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLP
Sbjct: 361 RLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLP 420

[Close]

BLAST of Clc04G09050 vs. ExPASy Swiss-Prot
Match: A2XFC1 (DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2)

HSP 1 Score: 568.9 bits (1465), Expect = 4.7e-161
Identity = 290/409 (70.90%), Postives = 347/409 (84.84%), Query Frame = 0


Query: 23  KSSLKPDSVILQILQEFSDC--------STASSSSSSKTL---DDLGLSSSCREVTDLSL 82
           +S L+PD+ IL  L+  +          S++SSSS+SK L   DD   ++S   V D   
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDD--PAASYIVVADQDS 95

Query: 83  SSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYANIS 142
           +SV S I  L+L  ARSILSG GF+F VPSR+A+NQ+Y+P+LDRIVL  + + RP+AN++
Sbjct: 96  ASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVA 155

Query: 143 TVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRS 202
           T RK TIT R+L LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRS
Sbjct: 156 TARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRS 215

Query: 203 SLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKD 262
           SL+V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKD
Sbjct: 216 SLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKD 275

Query: 263 AAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALVDSDPYGLKILS 322
           AA++RLAEDRFYNRFPCII+TAKGQPDVATRLFL+++K+ELKLPVLALVDSDPYGLKILS
Sbjct: 276 AAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILS 335

Query: 323 VYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDF 382
           VY CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY++PEQCRLPMT+ DIK GK+LLEEDF
Sbjct: 336 VYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDF 395

Query: 383 VKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           VK+N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 VKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]

BLAST of Clc04G09050 vs. ExPASy Swiss-Prot
Match: Q0DSV9 (Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 PE=2 SV=2)

HSP 1 Score: 568.9 bits (1465), Expect = 4.7e-161
Identity = 290/409 (70.90%), Postives = 347/409 (84.84%), Query Frame = 0


Query: 23  KSSLKPDSVILQILQEFSDC--------STASSSSSSKTL---DDLGLSSSCREVTDLSL 82
           +S L+PD+ IL  L+  +          S++SSSS+SK L   DD   ++S   V D   
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDD--PAASYIVVADQDS 95

Query: 83  SSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYANIS 142
           +SV S I  L+L  ARSILSG GF+F VPSR+A+NQ+Y+P+LDRIVL  + + RP+AN++
Sbjct: 96  ASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVA 155

Query: 143 TVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRS 202
           T RK TIT R+L LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRS
Sbjct: 156 TARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRS 215

Query: 203 SLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKD 262
           SL+V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKD
Sbjct: 216 SLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKD 275

Query: 263 AAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALVDSDPYGLKILS 322
           AA++RLAEDRFYNRFPCII+TAKGQPDVATRLFL+++K+ELKLPVLALVDSDPYGLKILS
Sbjct: 276 AAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILS 335

Query: 323 VYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDF 382
           VY CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY++PEQCRLPMT+ DIK GK+LLEEDF
Sbjct: 336 VYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDF 395

Query: 383 VKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           VK+N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 VKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]

BLAST of Clc04G09050 vs. ExPASy Swiss-Prot
Match: Q9Y5K1 (Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.3e-65
Identity = 130/355 (36.62%), Postives = 220/355 (61.97%), Query Frame = 0


Query: 70  SLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYAN 129
           S S V ++IE++I  I  S+      AF + +RS+   +   +   + +      R   +
Sbjct: 43  SSSEVLASIENIIQDIITSLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKS 102

Query: 130 IS--TVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILG 189
            S  + +K ++  +IL ++++L   N + TKRD++YTD +LF +QT  D++++D+SC+L 
Sbjct: 103 DSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLK 162

Query: 190 CTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFIL 249
            +R SL++++  KG++ G L +  ++G  ++CT  G    A+P NI  + ++ +DA F+L
Sbjct: 163 VSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCT-CGATAVAVPSNIQGIRNLVTDAKFVL 222

Query: 250 LVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLKKMKMELKLPVLALVDSDPY 309
           +VEKDA + RL +D F N+  PCI++T KG PD+ TRL +KK+     +PV  LVD+DP+
Sbjct: 223 IVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPH 282

Query: 310 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKD 369
           G++I+ +Y  GS +MS+++ +LT P I+WLG+ PSDL +  +P+   +P+T++D      
Sbjct: 283 GIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDS 342

Query: 370 LLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +L   +V   P W +E+ +M  +K KAEIQAL+     YLS VYLP KL+   W+
Sbjct: 343 ILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 396

[Close]

BLAST of Clc04G09050 vs. ExPASy Swiss-Prot
Match: Q9WTK8 (Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-64
Identity = 136/363 (37.47%), Postives = 214/363 (58.95%), Query Frame = 0


Query: 70  SLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTALRPYAN 129
           S S V + IE++I  I +S+      AF + +RS+         + I+  D   LR    
Sbjct: 43  SSSEVLTAIENIIQDIIKSLARNEVPAFTIDNRSS--------WENIMFDDSVGLRMIPQ 102

Query: 130 IST----------VRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVL 189
            +T          V+K  +  ++L ++++L   + + TKRD++YTD +LF +Q   DS +
Sbjct: 103 CTTRKIRSDSPKSVKKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAI 162

Query: 190 DDVSCILGCTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDM 249
           DD+SC+L   R SL+V++  KG++ G L +  ++G  + CT       A+P NI  +  +
Sbjct: 163 DDISCMLKVPRRSLHVLSTSKGLIAGNLRYMEEDGTRVQCT-CSATATAVPTNIQGMQHL 222

Query: 250 QSDALFILLVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLKKMKMELKLPVL 309
            +DA F+L+VEKDA + RL +D F +R  PCI+VT KG PD+ TRL +KK+     +PV 
Sbjct: 223 ITDAKFLLIVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVF 282

Query: 310 ALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTE 369
            LVD+DPYG++I+ +Y  GS +MS+++ NLT P I+WLG+ PSD+ +  IP+   +P+T+
Sbjct: 283 TLVDADPYGIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTK 342

Query: 370 QDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQK 421
            D      +L+  ++   P W +EL +M  +K KAEIQAL+     YLS VYLP KL+  
Sbjct: 343 HDQMKLDSILKRPYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRFG 396

[Close]

BLAST of Clc04G09050 vs. ExPASy TrEMBL
Match: A0A6J1GGP2 (DNA topoisomerase 6 subunit A OS=Cucurbita moschata OX=3662 GN=LOC111453780 PE=3 SV=1)

HSP 1 Score: 796.6 bits (2056), Expect = 5.1e-227
Identity = 407/420 (96.90%), Postives = 416/420 (99.05%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNPDGEAQLPFK+SLK DS+ILQIL+EFSDCSTA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPDGEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. ExPASy TrEMBL
Match: A0A6J1IM23 (DNA topoisomerase 6 subunit A OS=Cucurbita maxima OX=3661 GN=LOC111477696 PE=3 SV=1)

HSP 1 Score: 794.7 bits (2051), Expect = 1.9e-226
Identity = 407/420 (96.90%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNPD EAQLPFK+SLK DS+ILQIL+EFSDCSTA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQSTIE LILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. ExPASy TrEMBL
Match: A0A6J1CR74 (DNA topoisomerase 6 subunit A OS=Momordica charantia OX=3673 GN=LOC111013584 PE=3 SV=1)

HSP 1 Score: 794.7 bits (2051), Expect = 1.9e-226
Identity = 406/420 (96.67%), Postives = 415/420 (98.81%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNPD EAQLPFK+ LKPDS ILQI++EF DCSTA SSSSSKTL+DLGLS
Sbjct: 1   MADKRKRRRSELNPDDEAQLPFKNRLKPDSAILQIIKEFGDCSTAPSSSSSKTLEDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           S+CREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  STCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCMKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. ExPASy TrEMBL
Match: A0A0A0L216 (DNA topoisomerase 6 subunit A OS=Cucumis sativus OX=3659 GN=TOP6A PE=3 SV=1)

HSP 1 Score: 785.8 bits (2028), Expect = 9.0e-224
Identity = 403/420 (95.95%), Postives = 413/420 (98.33%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LN + EAQLPFK+ LKPDS ILQIL+E SD STASSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIES+ILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. ExPASy TrEMBL
Match: A0A5A7TWM5 (DNA topoisomerase 6 subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=TOP6A PE=3 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 1.5e-223
Identity = 403/420 (95.95%), Postives = 412/420 (98.10%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCSTASSSSSSKTLDDLGLS 60
           MADKRKRRRS+LNP+ EAQLPFK+ LK DS ILQIL+E SD S  SSSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPEDEAQLPFKNKLKADSFILQILKELSDSSAVSSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIES+ILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTALRPYANISTVRK+TITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]

BLAST of Clc04G09050 vs. TAIR 10
Match: AT5G02820.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 701.8 bits (1810), Expect = 3.3e-202
Identity = 360/429 (83.92%), Postives = 394/429 (91.84%), Query Frame = 0


Query: 1   MADKRKRRRSQLNPDGEAQLPFKSSLKPDSVILQILQEFSDCS---------TASSSSSS 60
           MADK+KR+RS+   D   +LPFKS L+ D VI ++L+ +   S          +SSSS  
Sbjct: 1   MADKKKRKRSK--DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSKP 60

Query: 61  KTLDDLGLSSSCREVTDLSLSSVQSTIESLILKIARSILSGNGFAFDVPSRSAANQLYVP 120
            TL DL LSSSCREV DLSLSSVQ+ IE++I++IARSIL+G+GF+F VPSR+A+NQLYVP
Sbjct: 61  LTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVP 120

Query: 121 ELDRIVLKDKTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQD 180
           ELDRIVLKDK+ LRP+A++S+VRKTTITTRIL L+HQLCL+NIHVTKRDLFYTDVKLFQD
Sbjct: 121 ELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQD 180

Query: 181 QTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240
           QTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN
Sbjct: 181 QTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240

Query: 241 IDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKKMKME 300
           IDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFL+KMKME
Sbjct: 241 IDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300

Query: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360
           LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC
Sbjct: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360

Query: 361 RLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLP 420
           RLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLP
Sbjct: 361 RLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLP 420

[Close]

BLAST of Clc04G09050 vs. TAIR 10
Match: AT3G13170.1 (Spo11/DNA topoisomerase VI, subunit A protein )

HSP 1 Score: 219.2 bits (557), Expect = 6.4e-57
Identity = 120/311 (38.59%), Postives = 181/311 (58.20%), Query Frame = 0


Query: 111 PELDRIVLKDKTALRPYANISTVRKT---TITTRILQLVHQLCLKNIHVTKRDLFYTDVK 170
           PE D +   DK   +    +    +T    +  R+L +V QL  +N H +KRD++Y    
Sbjct: 48  PEADCLCSSDKPKGQEIFTLKKEPQTYRIDMLLRVLLIVQQLLQENRHASKRDIYYMHPS 107

Query: 171 LFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKA 230
            F+ Q+  D  + D+  +  C+R +LNV++   G+V+G L F + G   DC         
Sbjct: 108 AFKAQSIVDRAIGDICILFQCSRYNLNVVSVGNGLVMGWLKFREAGRKFDCLNSLNTAYP 167

Query: 231 IPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLKK 290
           +P  ++ V D+ S A +IL+VEK+  + RLA D F     CI++T +G PDV+TR FL+ 
Sbjct: 168 VPVLVEEVEDIVSLAEYILVVEKETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRFLRL 227

Query: 291 MKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKI 350
           +  +L LPV  LVD DPYG +IL+ Y  GS  M+YD  +L  PD+KWLG  PSD + Y +
Sbjct: 228 LMEKLHLPVHCLVDCDPYGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEVYSV 287

Query: 351 PEQCRLPMTEQDIKTGKDLLEEDFVKKN-PGWVEELTLMVKTKQKAEIQALSSFGFQYLS 410
           P+QC LP+TE+D K  + +L   ++K+  P W  EL  M+K   K EI+ALS     +LS
Sbjct: 288 PKQCLLPLTEEDKKRTEAMLLRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLS 347

Query: 411 EVYLPLKLQQK 418
           EVY+P K++++
Sbjct: 348 EVYIPSKIRRE 358

[Close]

BLAST of Clc04G09050 vs. TAIR 10
Match: AT1G63990.1 (sporulation 11-2 )

HSP 1 Score: 186.4 bits (472), Expect = 4.6e-47
Identity = 127/391 (32.48%), Postives = 211/391 (53.96%), Query Frame = 0


Query: 45  ASSSSSSKTLDDLGLSSSCREVTDLSL-SSVQSTIESLILKIARSILSGNGFAFDVP--- 104
           +S  SS K   D  LS       D+ L    ++ IE  +L + R + S +    D+    
Sbjct: 4   SSGLSSMKFFSDQHLS-----YADILLPHEARARIEVSVLNLLRILNSPDPAISDLSLIN 63

Query: 105 ---SRSAANQLYVPELDRIVLKDKTALRPYANISTVRKTTITTRILQLVHQLCLKNIHVT 164
              S S  N+  + ++  I L          N  T +      +++++  Q+ L+   VT
Sbjct: 64  RKRSNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVT 123

Query: 165 KRDLFY----TDVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNG 224
           +R+LFY         F  Q + +  + DV  +L C+R SL ++A+ +G+V GRL   + G
Sbjct: 124 QRELFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQEPG 183

Query: 225 -DMIDCTKMGMGGKAIPPNIDRVGD--MQSDALFILLVEKDAAYIRLAEDRFYNRFPCII 284
            + +DC+  G  G AI  +++ + +  M++DA +I++VEK A + RL EDR +N  PC+ 
Sbjct: 184 KEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCVF 243

Query: 285 VTAKGQPDVATRLFLKKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTT 344
           +TAKG PD+ATR FL +M      LP+L LVD +P GL IL  +  GS  M  ++     
Sbjct: 244 ITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRYAC 303

Query: 345 PDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTK 404
            ++KW+G+R  DL+   IPE+  +P+  +D +  K LL    +++N  ++EEL+LMV+T 
Sbjct: 304 -NVKWIGLRGDDLN--LIPEESLVPLKPKDSQIAKSLLSSKILQEN--YIEELSLMVQTG 363

Query: 405 QKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           ++AEI+AL   G+ YL + Y+  K+ Q  ++
Sbjct: 364 KRAEIEALYCHGYNYLGK-YIATKIVQGKYI 383

The following BLAST results are available for this feature:

BLAST of Clc04G09050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881252.1	4.7e-227	97.62	DNA topoisomerase 6 subunit A [Benincasa hispida]	[more]
XP_023544835.1	1.0e-226	96.90	DNA topoisomerase 6 subunit A [Cucurbita pepo subsp. pepo] >XP_023544836.1 DNA t...	[more]
XP_022950775.1	1.0e-226	96.90	DNA topoisomerase 6 subunit A [Cucurbita moschata] >KAG6603699.1 DNA topoisomera...	[more]
XP_022143741.1	4.0e-226	96.67	DNA topoisomerase 6 subunit A [Momordica charantia]	[more]
XP_022977345.1	4.0e-226	96.90	DNA topoisomerase 6 subunit A [Cucurbita maxima]	[more]

BLAST of Clc04G09050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ03	4.6e-201	83.92	DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana OX=3702 GN=TOP6A PE=1 SV=1	[more]
A2XFC1	4.7e-161	70.90	DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 ...	[more]
Q0DSV9	4.7e-161	70.90	Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 P...	[more]
Q9Y5K1	6.3e-65	36.62	Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1	[more]
Q9WTK8	1.4e-64	37.47	Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2	[more]

BLAST of Clc04G09050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGP2	5.1e-227	96.90	DNA topoisomerase 6 subunit A OS=Cucurbita moschata OX=3662 GN=LOC111453780 PE=3...	[more]
A0A6J1IM23	1.9e-226	96.90	DNA topoisomerase 6 subunit A OS=Cucurbita maxima OX=3661 GN=LOC111477696 PE=3 S...	[more]
A0A6J1CR74	1.9e-226	96.67	DNA topoisomerase 6 subunit A OS=Momordica charantia OX=3673 GN=LOC111013584 PE=...	[more]
A0A0A0L216	9.0e-224	95.95	DNA topoisomerase 6 subunit A OS=Cucumis sativus OX=3659 GN=TOP6A PE=3 SV=1	[more]
A0A5A7TWM5	1.5e-223	95.95	DNA topoisomerase 6 subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=TOP6A PE...	[more]

BLAST of Clc04G09050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02820.1	3.3e-202	83.92	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT3G13170.1	6.4e-57	38.59	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT1G63990.1	4.6e-47	32.48	sporulation 11-2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002815	Spo11/DNA topoisomerase VI subunit A	PRINTS	PR01550	TOP6AFAMILY	coord: 158..169 score: 53.65 coord: 172..189 score: 39.24 coord: 269..290 score: 50.85 coord: 301..317 score: 55.15 coord: 190..205 score: 44.92 coord: 245..262 score: 51.04
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 46..420
IPR004085	DNA topoisomerase VI, subunit A	PRINTS	PR01552	TPISMRASE6A	coord: 275..295 score: 47.62 coord: 391..414 score: 42.19 coord: 166..183 score: 32.64 coord: 100..120 score: 30.95 coord: 219..237 score: 34.87
IPR004085	DNA topoisomerase VI, subunit A	HAMAP	MF_00132	Top6A	coord: 68..420 score: 36.519512
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal	PFAM	PF04406	TP6A_N	coord: 134..195 e-value: 6.5E-21 score: 74.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 60..198 e-value: 2.6E-39 score: 136.4
None	No IPR available	GENE3D	3.40.1360.10		coord: 199..420 e-value: 3.8E-78 score: 264.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR10848:SF4	DNA TOPOISOMERASE 6 SUBUNIT A	coord: 46..420
IPR034136	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	CDD	cd00223	TOPRIM_TopoIIB_SPO	coord: 244..404 e-value: 2.7396E-72 score: 222.13
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	56726	DNA topoisomerase IV, alpha subunit	coord: 133..420

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G09050.1	Clc04G09050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006265	DNA topological change
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0000706	meiotic DNA double-strand break processing
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0009330	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
cellular_component	GO:0000228	nuclear chromosome
cellular_component	GO:0005694	chromosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003824	catalytic activity