Sed0006109 (gene) Chayote v1

Overview


Name	Sed0006109
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	LG03: 5783555 .. 5788957 (+)
RNA-Seq Expression	Sed0006109
Synteny	Sed0006109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCAACGCCCGCTCACTCAGAAGTCTCCGTGCTTCCCCATCTTCGTTTTCACGCCGTCTCCTCCACCTTCCGCCAAGCTCAGTGTCGCCACCGCCGGCGCCGACGCCGACGCCGGCTTATTCCGACTCCGTTCTCATCATAGCAGCTTGCACTGATTTTATACTTTTTTGTTACTGGTATTCTCTTAATCTTCATCTATGTCTTCTCACTTCAAACACACACAAATTAGGGTTTATCTCATGAAAGTATGTGGAGTTGTCTTGATTATTAGTACTATCCTATAATTTTAATTTTTCAACTTTTGATTAACAATAGCCGAGTTGCAAGGGGAAAAAGAAAAGAAAACAGCCTTGCGGCAAATTAGGACTCTTCGAACTGTCGTGTTATCTGTGGCATATCTCTGTCAAGTAAAGCTTTGATCATAATTATTTCTCTTTGTTCTCTGCCGAAATTGCCTTTGTTTCTCTGATCATCAAATTTTGCGCATCTCCATTCTTTATTTATCCAGTATCTGTCGAATTAATTTTGTAGGAATTATTCTGATTGAACTAGCAACTCTGACCATATTTAATTTCGTAGATTGTAGTTGGGAAGTACCCAATGAGTTTTCCTTTATGAATTTATGTTCCTTAGATTGACTGATTGCAGCCATACTTCGAATTTCTTGAAATAAGTGCTGTGCTTCATGTACTTAATTCCATTTATTTCAAGGGCTCAAAGGGACCTAAAACTTCTCTCTTTCAGTCCCTTTTATGCTTAGTATATATAGTAATAGGATATAGTTTATATTTAAGTTCTCTCCTCGCATGCTACTTGAATTTATTGGAGCAGTCTGTAATTGAGGGGGAAAATAGTGCTAAATATGAAAAATTGAATCAACCAATTTAGTTCGAAAGCTGGTTTTGTTTTATACCATAGATTGGGGTGCCATTCCTGGCCACAAACCTACCAAAACATCGTTTCTGTTCTTTTTCTTGGATGATCTCATGTTAAGTAGATGAAACCCTGCACTACTATGCAATTCCTATTTGTTGTTAATTGTTATACAGATCAGGCTTTTTGTTGCTTTAACTTCTCCTTTTCAGATTCTTGATTATACTTTTTTTGTGGGTTTTTCCTATCTCTTCTCTTTCCTCTTGAGTAGTATCTTACCCTAATTTTTCAATTGAGATTTTCTTTCGCCATAGAAGTTGCATTCACTGATGGGCTGATATGCATCTCTCTTCAGGTAGAGAGAGCCACTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGACGAAACCTCCGTGAGAATTTGGTAACGAAACTCATGAAAGATGTCGAGGGCACTTGTAGGTTTGTTATCTTTCCCCTTTTTTGTTTTATGGAACAATACTGTTGATGTTCTATTTTTTGTTAACTTTAAAGAAAAAAGGCCTAAGATAAAATGAATAGCTATTTGATAATGGGTGTTGAGGTTGTAGGGTGGTATCCCTTGCCTGAGATAAAATGAACAACTCAAGTATCCCAAAGTCATCCACATTCCACTCTCTCAACCCAACTTTGAATATCTTCAATTTTTTAAAAATAAACTTAAAGACCTCTCATCTTTCATTGGATTCAATCATGGTAACAGATAGGTCTTTTAAATAATGGTGTTGAAGCCACATAGTCCCCAGCTTAAAAAGATCATAGATCTCGATTAACTGTCATTTATGGTGCAAAGAGTCGTGATCTAAGTATCAAGTTTAAGTCTAGGACACAATTTTTGCCCATTCCTTGTGGAGAGTGAGGATGTGTGCTATTTTGTGGTGTATAATTTTTAAATGAGTTAGAGAGATCTTCTGATGATAATGGGAATGTTCTAGTTAGATTTTGTTGACTGAATCAGGAAGATTTAATTTTTATTTTTCAATTATTTTTTAAAATAAAGTTTTCTAGAAAGCCTAGTGGACTTTGTAACTCTGCCAACATTAGATTTTTTGCAGGTGATTTTGTTACACTAAAATCACCTGCAAAACACCAGACTTTCTCAGAATGGCCGTACAGATTACCCAACTTGTCTCAAAAGTTTAATTTACCCTTGAAGGGGCATAAATACTTGAAGTGGACCGATAGTTGAAAATAATAAAATCTCGTAGATATAGCGGAGTCGTGGATCACTTCCATCGAGAGCATAATAATAGTAACACTTTCAGATCCCCATATTTCTGTCTTCTTCCATGCCCCCACAGCTTCTCAATATGCTTTAAACTAATTTAGTAGGACAAGATTGAGGAGGATCTCGACATTTACCCCTTCTGTTCAAACCAGGGGAAGACATTCTGCTTTAGCCCAAAGGCTCAAAATTATTAATCATCTTCTCTTGTTGCATTAATGGGATAAAGGGAGAAAAATTGATGGTGGTTCTAGCATTTTTCCCCTGAGCTACATAGTTGCAACTTGCATATAGTTCTACTTAGACAGACTGATCCTTTTGCTGAATATGCATGTCAGTTATAAACGGATGAAAACAAATCTAAACTTTTTGATCGGAGCCCCTACTATGTTAGTTTGTTTTCCTTTGGAGGTTCAATTTTTTGTATTCCCCTTGTATTCTTTCATTTATTTTTGACGAAAGTTTGAATAGTTCGACGGATGTCGGATGGTATTTCTTTTGAAAGTTTGATACCTATGTCATCTCGTGAGCAACTAGAGGGATTTGGTTATTGAAAAAAACTTATCTACTTTGGCACAGCGGCCGGCATGGTTTTGTAGTGGCGATTACGGGAATCGAGAATGTTGGGAAAGGACTGATTCGTGATGGGACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCATTCAAGGGAGAAATATTAGAAGCAGTCGTTACTATGGTCAACAAGGTTGGTATATGCCACAATTTTTTGCTATCTAGCTAGTAATTAATAAATGTTTTTTATGATAAGTATGAATATGACTGCAACTTGCAACTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAATCACGTAAGTATATATTTATGAGCTATTTCAATTATCTTCCTTTTCCTTCTAATGTTTCAAACCACCAAATTTCTTGTGGGGCTTGGACCTTTTTAATAATTAAAAGAAAAGATAGATCCCAGATCTATTACGATATAGAAATAATCGAAAATACAAGACAAAGCAAGTTTAAATTACATGAACCCTTCTATTCTTGAGTTCACTCAAGGCCCAATAGTAGAATGGTCAAAATATTTCATACCTTTCTCCTTCCTCTCTACTTTATATAACTAATGATTTTGTTATTTCATGGACTAAAAGTAAGCATTATTGTAATGTTAGGGCTAAAAGTGCTCAATTTTGAAACTTCGGGATTAAATTATTGAAACTAGACCCCAAATTTAAGGACTGAAAATTTACTTTTCCCAAAAAAACTATTTACCCCCCATAAATGTGCTTAATTAAAAATAAATGTGATTAATTAAAGAACTTGTCTCACATCTTATGTTTCAGTTGATTCCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACTACTTCGGATGGATCAGTATATTTCTATTTTGAATGCCTTCTATAACATCTACTGCTAATGCCCTCTCGTCGTGTTAAATTTACCAAATTACCTCCTCTTCTACTGTAGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTTGATGCAACTGAAATCGTAAGCGTTTTCCTTATATTAGTATTGTTGTAGATATCTCCATTGGTTGTTCAATTGCGATCATGAATCATGATTTTCTGTGTGCTTTGCCTTTATTCTTGCCAAACTCGGATGAACTCTTGGCTTAGGGATGAGCGTTGTTACCCCGGGTAAAGTGGAGCGAAGCTCCGGTTTCCCAATTTCTTAGGAAAAAAAAATTCAGAGGAACTCTCCAAGGATATATGGGCTTGAGACGTTCCTAAGCTCTTTAAATCAAGAGTAGTATACTGAATTATTTTAGACTTCTGTCGTATAAGTTGATATCAAGCCCGATCTGTGACCATTTTGTTTTTGGTTTTCCATTATTAAAGGAAGTAATGGTCCCCTAGGAGTGGCACAAGTGGTTGAAAGTTTGGGTTTTGAAGGTGTGCTCCCCTCAAAGTCTCAGGTTCAAAATTTACCTGTGACACGACATTAATTTGTAGACACCTCACATGTCTCCATTCTTTCGATGTCTTCCAATGCCTGACCTAGGGACGGGCGTAGTTATCTCAGGTATAGTGAAGCGAAGCTCTGATTTTCCAATTTTTTAAAAAAAATTATTAAAGGAAGTAATGCTTATAAGTTTACTTTTCAAAAGCATAAAACAATAAAACAAGATTGCTATCAAATGGAGGCCTTAGTTATAAAAAAAAACACTTTGGGATGTAAGAAGTCTAGTTCTGAGAAGTGTGAATATTGTTCCTTTTTACTTGAAAGTTCAGTAGTTGTGTCCACTAGTACAATTTATCTATTTTGCATATTCTTCTCTGAAGTGGTGAAAATATTCTAAACTTGATAACTCCATGTTCACGCTTGTGACTTCGATAGAATCTGTCCGTGTGTTCTTTAAAGTTTCTTTCTTGTCTAAGAAGAAAAATAATCTGTCTCTCTGTGGCACTAGCAAATTCTGAGATCTAGCTGATAATTCGAGTATTAGCTAGTAGATAAGATTCATGTGAGGTGTTTCGATGAGGAATTAGTTTGAAGAATTATTTTGAATAGTTAGAAATTGAGAGTTACAGTAAAAAAACTTGTTTGGATGTGGTTTTTTTGTAAAGGAGTTTGGAGACAATATGTGAATTTGAAATGAGTACTTAAAAGAGAGCGATTAAAAATGAGTTATTTTAAGTGGTTATAGTAAATCTTCCATGAATTTAACAAACAAACACCCCAAGGATCGCTGCTAAAGTAAGAAAAACCTATGGAACTAGCATTTGTGTGGGTGTGTTTTCTTAATTTATATATTGACTTTACTGCCCCCATTGAAGTATTTGTTTGGTTTGCAGTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGATCCTTCGGCGGCTTAAGTGTGCAATAATCTTGTTCAAGCAATTCTTCCTTGCATTGGAGTATTGTATTACCAGTTTGTATACTGTTGTTATCGCCTAACCCTATCATATACTTTTTTCTCTTACCTAATTTTATTGTATAGTTTTTCCATCTTCTAAACTGCTTTTGTATTTCATTATACAGATCCTCTTGTTAATTACTTTTTATTTCAGTGAGTGACATTAGAATGATAAACATTTTAATCTTATCAGGAATCATGGTACCCCTTTCTATATCCC

mRNA sequence

GTTTCAACGCCCGCTCACTCAGAAGTCTCCGTGCTTCCCCATCTTCGTTTTCACGCCGTCTCCTCCACCTTCCGCCAAGCTCAGTGTCGCCACCGCCGGCGCCGACGCCGACGCCGGCTTATTCCGACTCCGTTCTCATCATAGCAGCTTGCACTGATTTTATACTTTTTTGTTACTGGTAGAGAGAGCCACTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGACGAAACCTCCGTGAGAATTTGGTAACGAAACTCATGAAAGATGTCGAGGGCACTTGTAGCGGCCGGCATGGTTTTGTAGTGGCGATTACGGGAATCGAGAATGTTGGGAAAGGACTGATTCGTGATGGGACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCATTCAAGGGAGAAATATTAGAAGCAGTCGTTACTATGGTCAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAATCACTTGATTCCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACTACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTTGATGCAACTGAAATCTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGATCCTTCGGCGGCTTAAGTGTGCAATAATCTTGTTCAAGCAATTCTTCCTTGCATTGGAGTATTGTATTACCAGTTTGTATACTGTTGTTATCGCCTAACCCTATCATATACTTTTTTCTCTTACCTAATTTTATTGTATAGTTTTTCCATCTTCTAAACTGCTTTTGTATTTCATTATACAGATCCTCTTGTTAATTACTTTTTATTTCAGTGAGTGACATTAGAATGATAAACATTTTAATCTTATCAGGAATCATGGTACCCCTTTCTATATCCC

Coding sequence (CDS)

ATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGACGAAACCTCCGTGAGAATTTGGTAACGAAACTCATGAAAGATGTCGAGGGCACTTGTAGCGGCCGGCATGGTTTTGTAGTGGCGATTACGGGAATCGAGAATGTTGGGAAAGGACTGATTCGTGATGGGACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCATTCAAGGGAGAAATATTAGAAGCAGTCGTTACTATGGTCAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAATCACTTGATTCCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACTACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTTGATGCAACTGAAATCTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGATCCTTCGGCGGCTTAA

Protein sequence

MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

Homology

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BLAST of Sed0006109 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.8 bits (917), Expect = 5.2e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 6   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 65

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 66  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 125

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 126 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 181

[Close]

BLAST of Sed0006109 vs. NCBI nr
Match: XP_022923594.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022990163.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_022990164.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_023525602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita pepo subsp. pepo] >KAG6601991.1 hypothetical protein SDJN03_07224, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.8 bits (917), Expect = 5.2e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Sed0006109 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 6.8e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Sed0006109 vs. NCBI nr
Match: XP_021894560.1 (DNA-directed RNA polymerase II subunit RPB7 [Carica papaya] >XP_021894561.1 DNA-directed RNA polymerase II subunit RPB7 [Carica papaya])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTAA 176

[Close]

BLAST of Sed0006109 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 356.3 bits (913), Expect = 1.5e-94
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLR+NLV+KLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Sed0006109 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 7.1e-95
Identity = 167/174 (95.98%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPR+FGRNLR+NLV+KLMKDVEGTCSGRHGFVVA+TGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 175
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]

BLAST of Sed0006109 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.1e-91
Identity = 161/176 (91.48%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPR FGRNL+ENLV+KLMKDVEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Sed0006109 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.8e-53
Identity = 93/172 (54.07%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 172
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Sed0006109 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.8e-53
Identity = 94/172 (54.65%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 172
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Sed0006109 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.8e-53
Identity = 93/172 (54.07%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 172
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Sed0006109 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Sed0006109 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Sed0006109 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Sed0006109 vs. ExPASy TrEMBL
Match: A0A2I4HHD1 (DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC109017848 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 173/176 (98.30%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Sed0006109 vs. ExPASy TrEMBL
Match: A0A6J1CIV0 (DNA-directed RNA polymerase II subunit RPB7 OS=Momordica charantia OX=3673 GN=LOC111012000 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.8e-94
Identity = 171/176 (97.16%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVV+MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVSMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDIPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Sed0006109 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 336.3 bits (861), Expect = 1.5e-92
Identity = 161/176 (91.48%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPR FGRNL+ENLV+KLMKDVEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 177
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Sed0006109 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-14
Identity = 49/178 (27.53%), Postives = 94/178 (52.81%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHF---GRNLRENLVTKLMKDVEGTCSGRH-GFVVAITGIENVGK 60
           MF  + L  N+ +   +    G  L+  ++ +L++      + +  G+ VA+T ++ +G+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 120
           G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   GP++    ++    D
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIGTIKDDFLGVIND 173
            ++  G+ P +     S +IQ ++ VR+ +IG +      E   + +++ D+LG +++
Sbjct: 121 YKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSE 177

[Close]

BLAST of Sed0006109 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 43  GFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+++  T +EN+G+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 103 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 162
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 163 TIKDDFLG 169
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of Sed0006109 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.7e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
          MF+   LE ++++ P      L + + + L            G  V+I  I++V  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of Sed0006109 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.7e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
          MF+   LE ++++ P      L + + + L            G  V+I  I++V  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of Sed0006109 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032688.1	5.2e-95	98.86	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022923594.1	5.2e-95	98.86	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923...	[more]
XP_004150740.1	6.8e-95	98.86	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011...	[more]
XP_021894560.1	1.2e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 [Carica papaya] >XP_021894561.1 DNA-...	[more]
XP_038906688.1	1.5e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ...	[more]

BLAST of Sed0006109 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	7.1e-95	95.98	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	2.1e-91	91.48	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	8.8e-53	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	8.8e-53	54.65	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	8.8e-53	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of Sed0006109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSG6	2.5e-95	98.86	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E6V3	2.5e-95	98.86	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0KPS4	3.3e-95	98.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1	[more]
A0A2I4HHD1	1.3e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC1090...	[more]
A0A6J1CIV0	2.8e-94	97.16	DNA-directed RNA polymerase II subunit RPB7 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Sed0006109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	1.5e-92	91.48	DNA-directed RNA polymerase II	[more]
AT4G14660.1	2.2e-14	27.53	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	3.7e-14	33.59	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	2.7e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	2.7e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 78..157 e-value: 1.2E-16 score: 60.8
None	No IPR available	GENE3D	2.40.50.140		coord: 82..163 e-value: 4.7E-29 score: 102.2
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 1..160
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 81..159 e-value: 3.43727E-36 score: 118.903
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 2..81 e-value: 1.68506E-39 score: 126.913
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..81 e-value: 5.6E-28 score: 99.1
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 8..64 e-value: 1.0E-12 score: 48.1
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..160
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 78..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006109.1	Sed0006109.1	mRNA
Sed0006109.2	Sed0006109.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding