Sed0006109.2 (mRNA) Chayote v1

Overview


Name	Sed0006109.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	LG03: 5783555 .. 5788957 (+)
Sequence length	1519
RNA-Seq Expression	Sed0006109.2
Synteny	Sed0006109.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCAACGCCCGCTCACTCAGAAGTCTCCGTGCTTCCCCATCTTCGTTTTCACGCCGTCTCCTCCACCTTCCGCCAAGCTCAGTGTCGCCACCGCCGGCGCCGACGCCGACGCCGGCTTATTCCGACTCCGTTCTCATCATAGCAGCTTGCACTGATTTTATACTTTTTTGTTACTGGTATTCTCTTAATCTTCATCTATGTCTTCTCACTTCAAACACACACAAATTAGGGTTTATCTCATGAAAGTATGTGGAGTTGTCTTGATTATTAGTACTATCCTATAATTTTAATTTTTCAACTTTTGATTAACAATAGCCGAGTTGCAAGGGGAAAAAGAAAAGAAAACAGCCTTGCGGCAAATTAGGACTCTTCGAACTGTCGTGTTATCTGTGGCATATCTCTGTCAAGTAAAGCTTTGATCATAATTATTTCTCTTTGTTCTCTGCCGAAATTGCCTTTGTTTCTCTGATCATCAAATTTTGCGCATCTCCATTCTTTATTTATCCAGTATCTGTCGAATTAATTTTGTAGGAATTATTCTGATTGAACTAGCAACTCTGACCATATTTAATTTCGTAGATTGTAGTTGGGAAGTACCCAATGAGTTTTCCTTTATGAATTTATGTTCCTTAGATTGACTGATTGCAGCCATACTTCGAATTTCTTGAAATAAGTGCTGTGCTTCATGTACTTAATTCCATTTATTTCAAGGGCTCAAAGGGACCTAAAACTTCTCTCTTTCAGTCCCTTTTATGCTTAGTATATATAGTAATAGGATATAGTTTATATTTAAGTTCTCTCCTCGCATGCTACTTGAATTTATTGGAGCAGTCTGTAATTGAGGGGGAAAATAGTGCTAAATATGAAAAATTGAATCAACCAATTTAGTTCGAAAGCTGGTTTTGTTTTATACCATAGATTGGGGTGCCATTCCTGGCCACAAACCTACCAAAACATCGTTTCTGTTCTTTTTCTTGGATGATCTCATGTTAAGTAGATGAAACCCTGCACTACTATGCAATTCCTATTTGTTGTTAATTGTTATACAGATCAGGCTTTTTGTTGCTTTAACTTCTCCTTTTCAGATTCTTGATTATACTTTTTTTGTGGGTTTTTCCTATCTCTTCTCTTTCCTCTTGAGTAGTATCTTACCCTAATTTTTCAATTGAGATTTTCTTTCGCCATAGAAGTTGCATTCACTGATGGGCTGATATGCATCTCTCTTCAGGTAGAGAGAGCCACTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGACGAAACCTCCGTGAGAATTTGGTAACGAAACTCATGAAAGATGTCGAGGGCACTTGTAGGTTTGTTATCTTTCCCCTTTTTTGTTTTATGGAACAATACTGTTGATGTTCTATTTTTTGTTAACTTTAAAGAAAAAAGGCCTAAGATAAAATGAATAGCTATTTGATAATGGGTGTTGAGGTTGTAGGGTGGTATCCCTTGCCTGAGATAAAATGAACAACTCAAGTATCCCAAAGTCATCCACATTCCACTCTCTCAACCCAACTTTGAATATCTTCAATTTTTTAAAAATAAACTTAAAGACCTCTCATCTTTCATTGGATTCAATCATGGTAACAGATAGGTCTTTTAAATAATGGTGTTGAAGCCACATAGTCCCCAGCTTAAAAAGATCATAGATCTCGATTAACTGTCATTTATGGTGCAAAGAGTCGTGATCTAAGTATCAAGTTTAAGTCTAGGACACAATTTTTGCCCATTCCTTGTGGAGAGTGAGGATGTGTGCTATTTTGTGGTGTATAATTTTTAAATGAGTTAGAGAGATCTTCTGATGATAATGGGAATGTTCTAGTTAGATTTTGTTGACTGAATCAGGAAGATTTAATTTTTATTTTTCAATTATTTTTTAAAATAAAGTTTTCTAGAAAGCCTAGTGGACTTTGTAACTCTGCCAACATTAGATTTTTTGCAGGTGATTTTGTTACACTAAAATCACCTGCAAAACACCAGACTTTCTCAGAATGGCCGTACAGATTACCCAACTTGTCTCAAAAGTTTAATTTACCCTTGAAGGGGCATAAATACTTGAAGTGGACCGATAGTTGAAAATAATAAAATCTCGTAGATATAGCGGAGTCGTGGATCACTTCCATCGAGAGCATAATAATAGTAACACTTTCAGATCCCCATATTTCTGTCTTCTTCCATGCCCCCACAGCTTCTCAATATGCTTTAAACTAATTTAGTAGGACAAGATTGAGGAGGATCTCGACATTTACCCCTTCTGTTCAAACCAGGGGAAGACATTCTGCTTTAGCCCAAAGGCTCAAAATTATTAATCATCTTCTCTTGTTGCATTAATGGGATAAAGGGAGAAAAATTGATGGTGGTTCTAGCATTTTTCCCCTGAGCTACATAGTTGCAACTTGCATATAGTTCTACTTAGACAGACTGATCCTTTTGCTGAATATGCATGTCAGTTATAAACGGATGAAAACAAATCTAAACTTTTTGATCGGAGCCCCTACTATGTTAGTTTGTTTTCCTTTGGAGGTTCAATTTTTTGTATTCCCCTTGTATTCTTTCATTTATTTTTGACGAAAGTTTGAATAGTTCGACGGATGTCGGATGGTATTTCTTTTGAAAGTTTGATACCTATGTCATCTCGTGAGCAACTAGAGGGATTTGGTTATTGAAAAAAACTTATCTACTTTGGCACAGCGGCCGGCATGGTTTTGTAGTGGCGATTACGGGAATCGAGAATGTTGGGAAAGGACTGATTCGTGATGGGACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCATTCAAGGGAGAAATATTAGAAGCAGTCGTTACTATGGTCAACAAGGTTGGTATATGCCACAATTTTTTGCTATCTAGCTAGTAATTAATAAATGTTTTTTATGATAAGTATGAATATGACTGCAACTTGCAACTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAATCACGTAAGTATATATTTATGAGCTATTTCAATTATCTTCCTTTTCCTTCTAATGTTTCAAACCACCAAATTTCTTGTGGGGCTTGGACCTTTTTAATAATTAAAAGAAAAGATAGATCCCAGATCTATTACGATATAGAAATAATCGAAAATACAAGACAAAGCAAGTTTAAATTACATGAACCCTTCTATTCTTGAGTTCACTCAAGGCCCAATAGTAGAATGGTCAAAATATTTCATACCTTTCTCCTTCCTCTCTACTTTATATAACTAATGATTTTGTTATTTCATGGACTAAAAGTAAGCATTATTGTAATGTTAGGGCTAAAAGTGCTCAATTTTGAAACTTCGGGATTAAATTATTGAAACTAGACCCCAAATTTAAGGACTGAAAATTTACTTTTCCCAAAAAAACTATTTACCCCCCATAAATGTGCTTAATTAAAAATAAATGTGATTAATTAAAGAACTTGTCTCACATCTTATGTTTCAGTTGATTCCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACTACTTCGGATGGATCAGTATATTTCTATTTTGAATGCCTTCTATAACATCTACTGCTAATGCCCTCTCGTCGTGTTAAATTTACCAAATTACCTCCTCTTCTACTGTAGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTTGATGCAACTGAAATCGTAAGCGTTTTCCTTATATTAGTATTGTTGTAGATATCTCCATTGGTTGTTCAATTGCGATCATGAATCATGATTTTCTGTGTGCTTTGCCTTTATTCTTGCCAAACTCGGATGAACTCTTGGCTTAGGGATGAGCGTTGTTACCCCGGGTAAAGTGGAGCGAAGCTCCGGTTTCCCAATTTCTTAGGAAAAAAAAATTCAGAGGAACTCTCCAAGGATATATGGGCTTGAGACGTTCCTAAGCTCTTTAAATCAAGAGTAGTATACTGAATTATTTTAGACTTCTGTCGTATAAGTTGATATCAAGCCCGATCTGTGACCATTTTGTTTTTGGTTTTCCATTATTAAAGGAAGTAATGGTCCCCTAGGAGTGGCACAAGTGGTTGAAAGTTTGGGTTTTGAAGGTGTGCTCCCCTCAAAGTCTCAGGTTCAAAATTTACCTGTGACACGACATTAATTTGTAGACACCTCACATGTCTCCATTCTTTCGATGTCTTCCAATGCCTGACCTAGGGACGGGCGTAGTTATCTCAGGTATAGTGAAGCGAAGCTCTGATTTTCCAATTTTTTAAAAAAAATTATTAAAGGAAGTAATGCTTATAAGTTTACTTTTCAAAAGCATAAAACAATAAAACAAGATTGCTATCAAATGGAGGCCTTAGTTATAAAAAAAAACACTTTGGGATGTAAGAAGTCTAGTTCTGAGAAGTGTGAATATTGTTCCTTTTTACTTGAAAGTTCAGTAGTTGTGTCCACTAGTACAATTTATCTATTTTGCATATTCTTCTCTGAAGTGGTGAAAATATTCTAAACTTGATAACTCCATGTTCACGCTTGTGACTTCGATAGAATCTGTCCGTGTGTTCTTTAAAGTTTCTTTCTTGTCTAAGAAGAAAAATAATCTGTCTCTCTGTGGCACTAGCAAATTCTGAGATCTAGCTGATAATTCGAGTATTAGCTAGTAGATAAGATTCATGTGAGGTGTTTCGATGAGGAATTAGTTTGAAGAATTATTTTGAATAGTTAGAAATTGAGAGTTACAGTAAAAAAACTTGTTTGGATGTGGTTTTTTTGTAAAGGAGTTTGGAGACAATATGTGAATTTGAAATGAGTACTTAAAAGAGAGCGATTAAAAATGAGTTATTTTAAGTGGTTATAGTAAATCTTCCATGAATTTAACAAACAAACACCCCAAGGATCGCTGCTAAAGTAAGAAAAACCTATGGAACTAGCATTTGTGTGGGTGTGTTTTCTTAATTTATATATTGACTTTACTGCCCCCATTGAAGTATTTGTTTGGTTTGCAGTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGATCCTTCGGCGGCTTAAGTGTGCAATAATCTTGTTCAAGCAATTCTTCCTTGCATTGGAGTATTGTATTACCAGTTTGTATACTGTTGTTATCGCCTAACCCTATCATATACTTTTTTCTCTTACCTAATTTTATTGTATAGTTTTTCCATCTTCTAAACTGCTTTTGTATTTCATTATACAGATCCTCTTGTTAATTACTTTTTATTTCAGTGAGTGACATTAGAATGATAAACATTTTAATCTTATCAGGAATCATGGTACCCCTTTCTATATCCC

mRNA sequence

GTTTCAACGCCCGCTCACTCAGAAGTCTCCGTGCTTCCCCATCTTCGTTTTCACGCCGTCTCCTCCACCTTCCGCCAAGCTCAGTGTCGCCACCGCCGGCGCCGACGCCGACGCCGGCTTATTCCGACTCCGTTCTCATCATAGCAGCTTGCACTGATTTTATACTTTTTTGTTACTGGTAGAGAGAGCCACTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGACGAAACCTCCGTGAGAATTTGGTAACGAAACTCATGAAAGATGTCGAGGGCACTTGTAGCGGCCGGCATGGTTTTGTAGTGGCGATTACGGGAATCGAGAATGTTGGGAAAGGACTGATTCGTGATGGGACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCATTCAAGGGAGAAATATTAGAAGCAGTCGTTACTATGGTCAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAATCACTTGATTCCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACTACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTTGATGCAACTGAAATCGTAAGCGTTTTCCTTATATTAGTATTGTTGTAGATATCTCCATTGGTTGTTCAATTGCGATCATGAATCATGATTTTCTGTGTGCTTTGCCTTTATTCTTGCCAAACTCGGATGAACTCTTGGCTTAGGGATGAGCGTTGTTACCCCGGGTAAAGTGGAGCGAAGCTCCGGTTTCCCAATTTCTTAGGAAAAAAAAATTCAGAGGAACTCTCCAAGGATATATGGGCTTGAGACGTTCCTAAGCTCTTTAAATCAAGAGTAGTATACTGAATTATTTTAGACTTCTGTCGTATAAGTTGATATCAAGCCCGATCTGTGACCATTTTGTTTTTGGTTTTCCATTATTAAAGGAAGTAATGGTCCCCTAGGAGTGGCACAAGTGGTTGAAAGTTTGGGTTTTGAAGGTGTGCTCCCCTCAAAGTCTCAGGTTCAAAATTTACCTGTGACACGACATTAATTTGTAGACACCTCACATGTCTCCATTCTTTCGATGTCTTCCAATGCCTGACCTAGGGACGGGCGTAGTTATCTCAGTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGATCCTTCGGCGGCTTAAGTGTGCAATAATCTTGTTCAAGCAATTCTTCCTTGCATTGGAGTATTGTATTACCAGTTTGTATACTGTTGTTATCGCCTAACCCTATCATATACTTTTTTCTCTTACCTAATTTTATTGTATAGTTTTTCCATCTTCTAAACTGCTTTTGTATTTCATTATACAGATCCTCTTGTTAATTACTTTTTATTTCAGTGAGTGACATTAGAATGATAAACATTTTAATCTTATCAGGAATCATGGTACCCCTTTCTATATCCC

Coding sequence (CDS)

ATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGACGAAACCTCCGTGAGAATTTGGTAACGAAACTCATGAAAGATGTCGAGGGCACTTGTAGCGGCCGGCATGGTTTTGTAGTGGCGATTACGGGAATCGAGAATGTTGGGAAAGGACTGATTCGTGATGGGACAGGTTTTGTCACTTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCATTCAAGGGAGAAATATTAGAAGCAGTCGTTACTATGGTCAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAATCACTTGATTCCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACTACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTTGATGCAACTGAAATCGTAAGCGTTTTCCTTATATTAGTATTGTTGTAG

Protein sequence

MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSVFLILVLL

Homology

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BLAST of Sed0006109.2 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.0 bits (811), Expect = 9.6e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 6   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 65

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 66  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 125

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 126 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 164

[Close]

BLAST of Sed0006109.2 vs. NCBI nr
Match: XP_022923594.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022990163.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_022990164.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_023525602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita pepo subsp. pepo] >KAG6601991.1 hypothetical protein SDJN03_07224, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.0 bits (811), Expect = 9.6e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

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BLAST of Sed0006109.2 vs. NCBI nr
Match: XP_021894560.1 (DNA-directed RNA polymerase II subunit RPB7 [Carica papaya] >XP_021894561.1 DNA-directed RNA polymerase II subunit RPB7 [Carica papaya])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

[Close]

BLAST of Sed0006109.2 vs. NCBI nr
Match: EOY33919.1 (DNA-directed RNA polymerase II isoform 4 [Theobroma cacao])

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 154/157 (98.09%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGE+LEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIV 158
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIV
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIV 157

[Close]

BLAST of Sed0006109.2 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

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BLAST of Sed0006109.2 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.2e-83
Identity = 150/159 (94.34%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPR+FGRNLR+NLV+KLMKDVEGTCSGRHGFVVA+TGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

[Close]

BLAST of Sed0006109.2 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.3e-79
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPR FGRNL+ENLV+KLMKDVEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT I  V
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCV 159

[Close]

BLAST of Sed0006109.2 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-47
Identity = 86/160 (53.75%), Postives = 119/160 (74.38%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +I ++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAI 160

[Close]

BLAST of Sed0006109.2 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-47
Identity = 87/160 (54.37%), Postives = 119/160 (74.38%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +I ++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAI 160

[Close]

BLAST of Sed0006109.2 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-47
Identity = 86/160 (53.75%), Postives = 119/160 (74.38%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +I ++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAI 160

[Close]

BLAST of Sed0006109.2 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.7e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

[Close]

BLAST of Sed0006109.2 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.7e-83
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

[Close]

BLAST of Sed0006109.2 vs. ExPASy TrEMBL
Match: A0A061H000 (DNA-directed RNA polymerase II isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_041752 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 154/157 (98.09%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGE+LEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIV 158
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIV
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIV 157

[Close]

BLAST of Sed0006109.2 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

[Close]

BLAST of Sed0006109.2 vs. ExPASy TrEMBL
Match: A0A6J0ZV58 (DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=LOC110412415 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI  +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCI 159

[Close]

BLAST of Sed0006109.2 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-80
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
           MFFHIVLERNMQLHPR FGRNL+ENLV+KLMKDVEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIVSV 160
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT I  V
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCV 159

[Close]

BLAST of Sed0006109.2 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-13
Identity = 45/154 (29.22%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHF---GRNLRENLVTKLMKDVEGTCSGRH-GFVVAITGIENVGK 60
           MF  + L  N+ +   +    G  L+  ++ +L++      + +  G+ VA+T ++ +G+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 120
           G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   GP++    ++    D
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 MEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR 151
            ++  G+ P +     S +IQ ++ VR+ +IG +
Sbjct: 121 YKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIK 153

[Close]

BLAST of Sed0006109.2 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-13
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 43  GFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+++  T +EN+G+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 103 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGT 150
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDT 151

[Close]

BLAST of Sed0006109.2 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
          MF+   LE ++++ P      L + + + L            G  V+I  I++V  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of Sed0006109.2 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
          MF+   LE ++++ P      L + + + L            G  V+I  I++V  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of Sed0006109.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032688.1	9.6e-83	97.48	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022923594.1	9.6e-83	97.48	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923...	[more]
XP_021894560.1	2.1e-82	96.86	DNA-directed RNA polymerase II subunit RPB7 [Carica papaya] >XP_021894561.1 DNA-...	[more]
EOY33919.1	2.8e-82	98.09	DNA-directed RNA polymerase II isoform 4 [Theobroma cacao]	[more]
XP_004150740.1	2.8e-82	96.86	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011...	[more]

BLAST of Sed0006109.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	1.2e-83	94.34	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	2.3e-79	90.57	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	3.0e-47	53.75	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	3.0e-47	54.38	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	3.0e-47	53.75	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of Sed0006109.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSG6	4.7e-83	97.48	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E6V3	4.7e-83	97.48	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A061H000	1.4e-82	98.09	DNA-directed RNA polymerase II isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_04175...	[more]
A0A0A0KPS4	1.4e-82	96.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1	[more]
A0A6J0ZV58	2.3e-82	96.86	DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=L...	[more]

BLAST of Sed0006109.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	1.6e-80	90.57	DNA-directed RNA polymerase II	[more]
AT4G14660.1	2.9e-13	29.22	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	3.8e-13	35.51	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	2.5e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	2.5e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 78..157 e-value: 1.2E-16 score: 60.8
None	No IPR available	GENE3D	2.40.50.140		coord: 82..163 e-value: 4.7E-29 score: 102.2
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 1..160
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 81..159 e-value: 3.43727E-36 score: 118.903
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 2..81 e-value: 1.68506E-39 score: 126.913
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..81 e-value: 5.6E-28 score: 99.1
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 8..64 e-value: 1.0E-12 score: 48.1
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..160
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 78..157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0006109	Sed0006109	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006109.2-five_prime_utr	Sed0006109.2-five_prime_utr-LG03:5783555..5783732	five_prime_UTR
Sed0006109.2-five_prime_utr	Sed0006109.2-five_prime_utr-LG03:5784785..5784799	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006109.2-exon	Sed0006109.2-exon-LG03:5783555..5783732	exon
Sed0006109.2-exon	Sed0006109.2-exon-LG03:5784785..5784915	exon
Sed0006109.2-exon	Sed0006109.2-exon-LG03:5786297..5786462	exon
Sed0006109.2-exon	Sed0006109.2-exon-LG03:5786559..5786609	exon
Sed0006109.2-exon	Sed0006109.2-exon-LG03:5787099..5787164	exon
Sed0006109.2-exon	Sed0006109.2-exon-LG03:5787258..5787860	exon
Sed0006109.2-exon	Sed0006109.2-exon-LG03:5788634..5788957	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006109.2-cds	Sed0006109.2-cds-LG03:5784800..5784915	CDS
Sed0006109.2-cds	Sed0006109.2-cds-LG03:5786297..5786462	CDS
Sed0006109.2-cds	Sed0006109.2-cds-LG03:5786559..5786609	CDS
Sed0006109.2-cds	Sed0006109.2-cds-LG03:5787099..5787164	CDS
Sed0006109.2-cds	Sed0006109.2-cds-LG03:5787258..5787359	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006109.2-three_prime_utr	Sed0006109.2-three_prime_utr-LG03:5787360..5787860	three_prime_UTR
Sed0006109.2-three_prime_utr	Sed0006109.2-three_prime_utr-LG03:5788634..5788957	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0006109.2	Sed0006109.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding