Homology
BLAST of Cla97C07G141370 vs. NCBI nr
Match:
XP_023527037.1 (sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 172.2 bits (435), Expect = 3.0e-39
Identity = 85/128 (66.41%), Postives = 102/128 (79.69%), Query Frame = 0
Query: 1 MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVEN 60
M+ P + + IF +G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V EN
Sbjct: 1 MMVPSVPEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQHGNFVVESAFERIVAEN 60
Query: 61 QYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 120
QYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES LKRTLK
Sbjct: 61 QYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLK 120
Query: 121 KWMEDLLE 126
KWME+LL+
Sbjct: 121 KWMEELLD 128
BLAST of Cla97C07G141370 vs. NCBI nr
Match:
XP_022980750.1 (sm-like protein LSM1B [Cucurbita maxima])
HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0
Query: 1 MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVEN 60
M+ P + + IF +G YLDRKLL+L LD RC IGT C+FD YG++V+ESAFER EN
Sbjct: 15 MMVPSVLEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQYGNVVVESAFERIFAEN 74
Query: 61 QYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 120
QYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL ARKAE +S V KRTLK
Sbjct: 75 QYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELQSSVFKRTLK 134
Query: 121 KWMEDLLE 126
KWME+L +
Sbjct: 135 KWMEELFD 142
BLAST of Cla97C07G141370 vs. NCBI nr
Match:
XP_022955856.1 (sm-like protein LSM1B [Cucurbita moschata])
HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 80/113 (70.80%), Postives = 95/113 (84.07%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
+G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V ENQYCD P+GLLVVR +
Sbjct: 15 IGSYLDRKLLILLLDGRCIIGTMCAFDQHGNFVVESAFERIVAENQYCDKPMGLLVVRGD 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLE 126
N + IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES LKRTLKKWME+LL+
Sbjct: 75 NAMFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLKKWMEELLD 127
BLAST of Cla97C07G141370 vs. NCBI nr
Match:
XP_038894529.1 (sm-like protein LSM1B [Benincasa hispida])
HSP 1 Score: 152.1 bits (383), Expect = 3.2e-33
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 0
Query: 37 SFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSL 96
SFD +G+IVLESAFER +VEN+YCDNPIGLLVVRAENIILIGE D SLPQLPPHMT VSL
Sbjct: 3 SFDQFGTIVLESAFERIIVENEYCDNPIGLLVVRAENIILIGEPDPSLPQLPPHMTVVSL 62
Query: 97 PQILTARKAERESLVLKRTLKKWMEDLLEE 127
PQILTARKAERES+ L+RTLKKWME+LLE+
Sbjct: 63 PQILTARKAERESVELQRTLKKWMEELLED 92
BLAST of Cla97C07G141370 vs. NCBI nr
Match:
XP_023527036.1 (sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 128.3 bits (321), Expect = 4.9e-26
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0
Query: 42 GSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILT 101
G+ V+ESAFER V ENQYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL
Sbjct: 46 GNFVVESAFERIVAENQYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILI 105
Query: 102 ARKAERESLVLKRTLKKWMEDLLE 126
ARKAE ES LKRTLKKWME+LL+
Sbjct: 106 ARKAELESSALKRTLKKWMEELLD 129
BLAST of Cla97C07G141370 vs. ExPASy Swiss-Prot
Match:
Q8LFL8 (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 5.6e-25
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLDRKLLVL D R +GT SFD + + VLE A ER +V QYCD P+GL V+R E
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
N++LIGELD +LPPHM VS +I A+K ERE+ L+ T++K ME L
Sbjct: 75 NVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125
BLAST of Cla97C07G141370 vs. ExPASy Swiss-Prot
Match:
Q945P8 (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLD+KLLVL D R +G SFD + + VLE A+ER +V + YCD P+GL ++R E
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
N++LIGELD+ +LP HM V +I A+KAE+E ++LK T++K ME L
Sbjct: 75 NVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKRMEFL 125
BLAST of Cla97C07G141370 vs. ExPASy Swiss-Prot
Match:
Q5E9Z8 (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 0
Query: 17 LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIIL 76
+D+K LVL D R IG S D + ++VL ER V +Y D P G+ VVR EN++L
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 77 IGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 118
+GE+DL P + VS+ +IL ++ E+++ + LK
Sbjct: 74 LGEIDLEKESDTP-LQQVSIEEILEEQRVEQQTKLEAEKLK 113
BLAST of Cla97C07G141370 vs. ExPASy Swiss-Prot
Match:
Q54W83 (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
LGD +D+KL+V+ D R FIG +FD + +IVL+ ER V + Y D +GL +R +
Sbjct: 5 LGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGD 64
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKK 119
N++++GE+D + +S +I A E+ + LK+
Sbjct: 65 NVVILGEIDPDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKR 110
BLAST of Cla97C07G141370 vs. ExPASy Swiss-Prot
Match:
O15116 (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 0
Query: 17 LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIIL 76
+D+K LVL D R IG S D + ++VL ER V +Y D P G+ VVR EN++L
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 77 IGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 118
+GE+DL P + VS+ +IL ++ E+++ + LK
Sbjct: 74 LGEIDLEKESDTP-LQQVSIEEILEEQRVEQQTKLEAEKLK 113
BLAST of Cla97C07G141370 vs. ExPASy TrEMBL
Match:
A0A6J1IXE4 (sm-like protein LSM1B OS=Cucurbita maxima OX=3661 GN=LOC111480024 PE=3 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 5.4e-39
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0
Query: 1 MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVEN 60
M+ P + + IF +G YLDRKLL+L LD RC IGT C+FD YG++V+ESAFER EN
Sbjct: 15 MMVPSVLEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQYGNVVVESAFERIFAEN 74
Query: 61 QYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 120
QYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL ARKAE +S V KRTLK
Sbjct: 75 QYCDKPMGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELQSSVFKRTLK 134
Query: 121 KWMEDLLE 126
KWME+L +
Sbjct: 135 KWMEELFD 142
BLAST of Cla97C07G141370 vs. ExPASy TrEMBL
Match:
A0A6J1GV01 (sm-like protein LSM1B OS=Cucurbita moschata OX=3662 GN=LOC111457720 PE=3 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 7.1e-39
Identity = 80/113 (70.80%), Postives = 95/113 (84.07%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
+G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V ENQYCD P+GLLVVR +
Sbjct: 15 IGSYLDRKLLILLLDGRCIIGTMCAFDQHGNFVVESAFERIVAENQYCDKPMGLLVVRGD 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLE 126
N + IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES LKRTLKKWME+LL+
Sbjct: 75 NAMFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLKKWMEELLD 127
BLAST of Cla97C07G141370 vs. ExPASy TrEMBL
Match:
A0A022Q0J9 (U6 snRNA-associated Sm-like protein LSm1 OS=Erythranthe guttata OX=4155 GN=LSM1 PE=3 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLD+KLLVL D R +G SFD + + VLE A ER +V YCD P+GL V+R E
Sbjct: 15 LASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEED 128
N++LIGELDL +LPPHMT VS +I A+KAERE+ LK T+KKWM D L+ D
Sbjct: 75 NVVLIGELDLEKDELPPHMTRVSAEEIKRAQKAEREASELKGTMKKWM-DFLDMD 128
BLAST of Cla97C07G141370 vs. ExPASy TrEMBL
Match:
V4SS25 (U6 snRNA-associated Sm-like protein LSm1 OS=Citrus clementina OX=85681 GN=LSM1 PE=3 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLD+KLLVL D R +GT CSFD + + VLE A ER +V + YCD P+GL V+R E
Sbjct: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
N++LIGELDL +LPPH+T VS+ +I A+KAERE+ LK +++K ME L
Sbjct: 75 NVVLIGELDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 125
BLAST of Cla97C07G141370 vs. ExPASy TrEMBL
Match:
A0A2H5NE06 (U6 snRNA-associated Sm-like protein LSm1 OS=Citrus unshiu OX=55188 GN=LSM1 PE=3 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLD+KLLVL D R +GT CSFD + + VLE A ER +V + YCD P+GL V+R E
Sbjct: 15 LASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
N++LIGELDL +LPPH+T VS+ +I A+KAERE+ LK +++K ME L
Sbjct: 75 NVVLIGELDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 125
BLAST of Cla97C07G141370 vs. TAIR 10
Match:
AT3G14080.1 (Small nuclear ribonucleoprotein family protein )
HSP 1 Score: 115.2 bits (287), Expect = 4.0e-26
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLDRKLLVL D R +GT SFD + + VLE A ER +V QYCD P+GL V+R E
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
N++LIGELD +LPPHM VS +I A+K ERE+ L+ T++K ME L
Sbjct: 75 NVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125
BLAST of Cla97C07G141370 vs. TAIR 10
Match:
AT3G14080.2 (Small nuclear ribonucleoprotein family protein )
HSP 1 Score: 115.2 bits (287), Expect = 4.0e-26
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLDRKLLVL D R +GT SFD + + VLE A ER +V QYCD P+GL V+R E
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
N++LIGELD +LPPHM VS +I A+K ERE+ L+ T++K ME L
Sbjct: 75 NVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125
BLAST of Cla97C07G141370 vs. TAIR 10
Match:
AT1G19120.1 (Small nuclear ribonucleoprotein family protein )
HSP 1 Score: 110.5 bits (275), Expect = 9.8e-25
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0
Query: 13 LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAE 72
L YLD+KLLVL D R +G SFD + + VLE A+ER +V + YCD P+GL ++R E
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 73 NIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 124
N++LIGELD+ +LP HM V +I A+KAE+E ++LK T++K ME L
Sbjct: 75 NVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKRMEFL 125
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8LFL8 | 5.6e-25 | 54.05 | Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1 | [more] |
Q945P8 | 1.4e-23 | 49.55 | Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1 | [more] |
Q5E9Z8 | 1.8e-10 | 37.62 | U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1 | [more] |
Q54W83 | 1.8e-10 | 33.02 | Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX... | [more] |
O15116 | 1.8e-10 | 37.62 | U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1IXE4 | 5.4e-39 | 64.84 | sm-like protein LSM1B OS=Cucurbita maxima OX=3661 GN=LOC111480024 PE=3 SV=1 | [more] |
A0A6J1GV01 | 7.1e-39 | 70.80 | sm-like protein LSM1B OS=Cucurbita moschata OX=3662 GN=LOC111457720 PE=3 SV=1 | [more] |
A0A022Q0J9 | 1.3e-24 | 55.65 | U6 snRNA-associated Sm-like protein LSm1 OS=Erythranthe guttata OX=4155 GN=LSM1 ... | [more] |
V4SS25 | 2.2e-24 | 54.95 | U6 snRNA-associated Sm-like protein LSm1 OS=Citrus clementina OX=85681 GN=LSM1 P... | [more] |
A0A2H5NE06 | 2.2e-24 | 54.95 | U6 snRNA-associated Sm-like protein LSm1 OS=Citrus unshiu OX=55188 GN=LSM1 PE=3 ... | [more] |
Match Name | E-value | Identity | Description | |
AT3G14080.1 | 4.0e-26 | 54.05 | Small nuclear ribonucleoprotein family protein | [more] |
AT3G14080.2 | 4.0e-26 | 54.05 | Small nuclear ribonucleoprotein family protein | [more] |
AT1G19120.1 | 9.8e-25 | 49.55 | Small nuclear ribonucleoprotein family protein | [more] |