Cla97C04G074070 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C04G074070
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	signal recognition particle 19 kDa protein
Location	Cla97Chr04: 21806004 .. 21808098 (-)
RNA-Seq Expression	Cla97C04G074070
Synteny	Cla97C04G074070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAGAGATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGGATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGGTTTTCTAGCAATGATTTGTCACTGTCATTGATAAAGATCTTCCCTTCATATTAGCTTTTGTTTTCCCTGCTGCCTATTTTTCATGGAAGTTAGCTGCACTACATTGAGTTTATATGAACCTATGATAATTGATAGAATGCGTTAATTTATATTAACAGCGTTCCCGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTGTGTTTGTGATTTTGTCTCTTTGGACCCTTTTCATCCCTTGGAAAAAGACTTCTATTTATAACTGAAGTCCAGGGTAATAGTGTACTATCCCATAGTATATTGGTCAAAGCATAAAGGTTAGTGAGTTCTTGCATGCATGAAATTAATTTAACCGCATGGTTTTTATATCAAGTAGATTTATAAACATGAAACTAGTCCATAAAGAAACAGTGGAGACTAGCCAAAAAGGAGAGAAGCTCTCTGAATCCTTCTACCCATTAATGTTGAAATAGTTGTCCACTTTTCATTAGCAAAGTTATAATAAACTATTAATCAAACATGTAAAAATTATTGCTTCTAAATAGTTTCTTTGATAAAGAGCTAAGAAGTCATGGGTTCATTCCATGGTGGTCACTTATCTAAGATTTAATATTCTACAAGTTTCCTTGACCCAAATGTTGTAGGGTCGAGTAGGTTGTTCCGTGAGATTAGTCGAGGTGCGTGCAAACTGGCTCGGACACTAACGGATATTAAAAAAAAAAAAAGTTTCTTTCAACATTCATCCCATTTATGAAAACGAAAACCTGACCCCCAGTTTGATCGAAACACTCTTACGTCTTTTAGAAGTATACAGTGAAATTGAAAATTCTGTTCGAAGCTCATTTCAAATCCAAAGTGGTAACAAAGCTCTCTTTAGAAATGAAACAATTCCCACCCTTTTTTTTTACCTTACCCCTTTGATTTTGAGCCTTTCCATCCTAACTTTCAGCAGATCTAATCAACCGACTTTATAGTGATGATTTGTGGATGTGGGATTCTTCTAAAATTATATTTAACTATACTGCTTGATTAACCAAACAACTACTCCCTACTATTGCGCGAGTTCAAGTAGTTGGGATAATTGTATCTATCTAATAGATGCAACAGTTTGTCCAACCTTCTAACGAAATTATCTTTTTTGTAATAGTTTTGTTACGAGTTTAATCAATAAACTTTTAGACTTGTGTTTGTTAGGTCCTTGAACGCAAAAATTATTTAATAGGTTTTTAAACTTTCTAACTTTGTGTTTAGTAGGTCTTTGAACTTTCAATTTCGTGTATAACAAGTTCTTAATTTTTTTTTTATCCTGTATCTAATAGATAATTTACCTATTAGATATTTTCTAAAATTTTAGCATCTATAAGACACAAAATTGAAATTTTAGAGCCATATTAGAAATGTAATTTTGATTTTATATTTTGTAGGTCCTCTAATTTGCTTTTTCTTTTTTAAATGTCAAACATGTTAAAATCTTGTCCTACGCAAATTTGAAAGTTCATGAATCTATTAACACACAAACTTGGAAGTTCAAGAAACTATTGGACACTTCTTAAAGTTTAGGAACCCAGGAGTATACAAAAACTTCAAACTTCAAAAGGCCAAACTTGTAATTTGACCTAAAAGGTTCTTATTCCCCTTTGAGTTCTTATTATCAGTGGAAATACCCTAGATTACAATTTTACATATGAGGTATCTGGCTATATTGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAG

mRNA sequence

ATGGATGGAGAGATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGGATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAG

Coding sequence (CDS)

ATGGATGGAGAGATTCCCAACATAAAGAGATGGGTAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGGATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAG

Protein sequence

MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

Homology

[Close]

BLAST of Cla97C04G074070 vs. NCBI nr
Match: XP_004147903.1 (signal recognition particle 19 kDa protein [Cucumis sativus] >XP_004147904.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011653673.1 signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTCVEIGDCC HLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 135

[Close]

BLAST of Cla97C04G074070 vs. NCBI nr
Match: KGN54616.2 (hypothetical protein Csa_018066 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTCVEIGDCC HLKLPF IEI
Sbjct: 84  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 143

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 144 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 203

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 204 STAGPSKGKGGRKKK 218

[Close]

BLAST of Cla97C04G074070 vs. NCBI nr
Match: XP_038879562.1 (signal recognition particle 19 kDa protein [Benincasa hispida])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]

BLAST of Cla97C04G074070 vs. NCBI nr
Match: XP_008438988.1 (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_008438989.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 7.4e-65
Identity = 128/135 (94.81%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]

BLAST of Cla97C04G074070 vs. NCBI nr
Match: XP_004147628.1 (signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011651094.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_031737658.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_031737659.1 signal recognition particle 19 kDa protein [Cucumis sativus] >KAE8650411.1 hypothetical protein Csa_009637 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 2.1e-64
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]

BLAST of Cla97C04G074070 vs. ExPASy Swiss-Prot
Match: Q943Z6 (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-49
Identity = 99/145 (68.28%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK CENP C+EI DCC HLKLP  +EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGR--------TK 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK LM +IAELVPRHP R         K
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 KQEPASSSSTAGPS--KGKSGRKKK 136
           KQEP +++ST+G S   GK G+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

[Close]

BLAST of Cla97C04G074070 vs. ExPASy Swiss-Prot
Match: P49964 (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.5e-48
Identity = 92/129 (71.32%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 7   NIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPR 66
           +IK+W V+YP+Y+NSKKT+AEGRRI   K C +PTCVEI DCCSHLK+P  IE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGPS 126
           DF Q GRVRV LKK+DG+  NPAI ++KQLM++IAELVP+H GRTKKQEPA +SSTAG S
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPA-ASSTAGTS 128

Query: 127 KGKSGRKKK 136
           KGK G+KKK
Sbjct: 129 KGKGGKKKK 136

[Close]

BLAST of Cla97C04G074070 vs. ExPASy Swiss-Prot
Match: P09132 (Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1 SV=3)

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-22
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGP 129
           RD   RGRVRV LK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 -SKGKSGRKKK 136
            SK   G+KKK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cla97C04G074070 vs. ExPASy Swiss-Prot
Match: Q5RBR1 (Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-22
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSSTAGP 129
           RD   RGRVRV LK+EDG+L      SRK +ML  AE++P+   RT+K   A  S   G 
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 -SKGKSGRKKK 136
            SK   G+KKK
Sbjct: 134 GSKKGKGKKKK 144

[Close]

BLAST of Cla97C04G074070 vs. ExPASy Swiss-Prot
Match: Q9D7A6 (Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-21
Identity = 64/132 (48.48%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASS--SSTA 129
           RD   RGRVRV LK+EDG+L      SRK +ML +AE++P+   RT+K   A        
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKSGRKKK 136
           G  KGK G+KKK
Sbjct: 134 GSKKGK-GKKKK 144

[Close]

BLAST of Cla97C04G074070 vs. ExPASy TrEMBL
Match: A0A1S3AYC2 (signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483920 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 128/135 (94.81%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]

BLAST of Cla97C04G074070 vs. ExPASy TrEMBL
Match: A0A0A0L5F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.0e-64
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 187

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 188 STAGPSKGKGGRKKK 201

[Close]

BLAST of Cla97C04G074070 vs. ExPASy TrEMBL
Match: A0A6J1IY39 (signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111479513 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 128/135 (94.81%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]

BLAST of Cla97C04G074070 vs. ExPASy TrEMBL
Match: A0A6J1GUF8 (signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111457558 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.8e-64
Identity = 127/135 (94.07%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPA-SS 120

Query: 121 STAGPSKGKSGRKKK 136
           STAGPSKGK GRKKK
Sbjct: 121 STAGPSKGKGGRKKK 134

[Close]

BLAST of Cla97C04G074070 vs. ExPASy TrEMBL
Match: A0A6J1CAM2 (signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC111009488 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 128/136 (94.12%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEI
Sbjct: 1   MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ+MLRIAELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVPRHPGRTKKQEPA-SS 120

Query: 121 STAGPSK-GKSGRKKK 136
           STAGPSK GK GRKKK
Sbjct: 121 STAGPSKSGKGGRKKK 135

[Close]

BLAST of Cla97C04G074070 vs. TAIR 10
Match: AT1G48160.1 (signal recognition particle 19 kDa protein, putative / SRP19, putative )

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 99/145 (68.28%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK CENP C+EI DCC HLKLP  +EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGR--------TK 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK LM +IAELVPRHP R         K
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 KQEPASSSSTAGPS--KGKSGRKKK 136
           KQEP +++ST+G S   GK G+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

The following BLAST results are available for this feature:

BLAST of Cla97C04G074070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147903.1	2.1e-67	97.04	signal recognition particle 19 kDa protein [Cucumis sativus] >XP_004147904.1 sig...	[more]
KGN54616.2	2.1e-67	97.04	hypothetical protein Csa_018066 [Cucumis sativus]	[more]
XP_038879562.1	1.1e-65	96.30	signal recognition particle 19 kDa protein [Benincasa hispida]	[more]
XP_008438988.1	7.4e-65	94.81	PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_0084389...	[more]
XP_004147628.1	2.1e-64	94.81	signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011651094.1 sig...	[more]

BLAST of Cla97C04G074070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q943Z6	2.0e-49	68.28	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
P49964	8.5e-48	71.32	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39...	[more]
P09132	4.7e-22	48.85	Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1...	[more]
Q5RBR1	4.7e-22	48.85	Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1...	[more]
Q9D7A6	1.0e-21	48.48	Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=...	[more]

BLAST of Cla97C04G074070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYC2	3.6e-65	94.81	signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC1034839...	[more]
A0A0A0L5F9	1.0e-64	94.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1	[more]
A0A6J1IY39	1.4e-64	94.81	signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GUF8	1.8e-64	94.07	signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CAM2	3.0e-64	94.12	signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Cla97C04G074070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48160.1	1.4e-50	68.28	signal recognition particle 19 kDa protein, putative / SRP19, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 13..106 e-value: 5.4E-29 score: 101.0
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 8..134
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	GENE3D	3.30.56.30		coord: 2..119 e-value: 3.1E-43 score: 149.0
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	SUPERFAMILY	69695	SRP19	coord: 6..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G074070.1	Cla97C04G074070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006617	SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0004386	helicase activity