Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGCCCCATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCGTAACACACGCATCCCCATTCCACTTGTGTCCTTTTAATTACATGCCTATTTTCTTAAAACTTACATTTTGTAATTACTTCAGTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATATATGATCTTAATCTAATACTGTATGTGTATCTCGCTTTTCCAAATTATATATCAACAAACTACATGACTCTGTGTATTTTATATAATCAACGCCTTTTCGATTACTTC
mRNA sequence
TCGCCCCATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATATATGATCTTAATCTAATACTGTATGTGTATCTCGCTTTTCCAAATTATATATCAACAAACTACATGACTCTGTGTATTTTATATAATCAACGCCTTTTCGATTACTTC
Coding sequence (CDS)
ATGGATTTGAATCCCCCACCCCCACTCTGTTGCTTGTGCGGCGACGTTGGTTTTCCAGCCAAACTCTTCCGCTGCGTTAGCTGCTCCACTCGATTCCAGCACTCTTACTGCAGCAACTTCTACTGTGGGGATCAATCGGGGGATCCCATACTTCAAATATGCGATTGGTGTCGAAGCCAACAGATAACCCGCCGCCCTGCCTCTACAACTGCGACTAATAATACCGGTACTACCTCCCACAAGGATCAGATCACGCAAAGAAGAAGCTCCGGCCCCGGATTCCCCTCCCCTCGCCCTGCTCCACGCCGCTACAAGCTCCTCAAGGATGTCTTGTGCTGA
Protein sequence
MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRYKLLKDVLC
Homology
BLAST of CmUC05G080590 vs. NCBI nr
Match:
XP_022924678.1 (uncharacterized protein LOC111432109 [Cucurbita moschata])
HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++
Sbjct: 1 MDLN--RPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCG-ESADPITRLCDWCRTE 60
Query: 61 QITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
TRRP+ A N G TS K DQIT+ +SS G PSPRPAPRRYKLLKDV+C
Sbjct: 61 HTTRRPSPAAA--NNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112
BLAST of CmUC05G080590 vs. NCBI nr
Match:
XP_023526855.1 (uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 164.5 bits (415), Expect = 5.4e-37
Identity = 80/117 (68.38%), Postives = 89/117 (76.07%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++
Sbjct: 1 MDLN--RPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCG-ESADPITRLCDWCRTE 60
Query: 61 QITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
TRRP A N G TS K DQIT+ +SS G PSPRPAPRRYKLLKDV+C
Sbjct: 61 HTTRRPGPAAA--NNGATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112
BLAST of CmUC05G080590 vs. NCBI nr
Match:
XP_004134287.1 (uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical protein Csa_010459 [Cucumis sativus])
HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PPLCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD +++CDWCRS+
Sbjct: 1 MDLN--PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCG-ESGDATIRVCDWCRSE 60
Query: 61 QITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
Q T RPA + TTS K ++IT+RRSS G PSPRPAPRRYKLLKDV+C
Sbjct: 61 QRTCRPAFAS------TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104
BLAST of CmUC05G080590 vs. NCBI nr
Match:
XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])
HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 41 MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 100
Query: 61 QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
Q TRRPA+ TTS KD +IT+ RSS G PSPRPAPRRYKLLKDV+C
Sbjct: 101 QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145
BLAST of CmUC05G080590 vs. NCBI nr
Match:
KAA0048831.1 (uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK20783.1 uncharacterized protein E5676_scaffold291G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 1 MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 60
Query: 61 QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
Q TRRPA+ TTS KD +IT+ RSS G PSPRPAPRRYKLLKDV+C
Sbjct: 61 QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105
BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match:
A0A6J1ED69 (uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC111432109 PE=4 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PLCCLCGDVGFPAKLFRC +CS RFQHSYCSNFYCG +S DPI ++CDWCR++
Sbjct: 1 MDLN--RPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCG-ESADPITRLCDWCRTE 60
Query: 61 QITRRPASTTATNNTGTTSHK-----DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
TRRP+ A N G TS K DQIT+ +SS G PSPRPAPRRYKLLKDV+C
Sbjct: 61 HTTRRPSPAAA--NNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112
BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match:
A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 9.9e-37
Identity = 79/113 (69.91%), Postives = 91/113 (80.53%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PPLCCLCGDVGFPAKLFRC +CS RFQHSYCSN+YCG +SGD +++CDWCRS+
Sbjct: 1 MDLN--PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCG-ESGDATIRVCDWCRSE 60
Query: 61 QITRRPASTTATNNTGTTSHK-DQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
Q T RPA + TTS K ++IT+RRSS G PSPRPAPRRYKLLKDV+C
Sbjct: 61 QRTCRPAFAS------TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104
BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match:
A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 1 MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 60
Query: 61 QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
Q TRRPA+ TTS KD +IT+ RSS G PSPRPAPRRYKLLKDV+C
Sbjct: 61 QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105
BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match:
A0A1S3AVF1 (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0
Query: 1 MDLNPPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ 60
MDLN PPLCCLCGDVGFPA LFRC +CS RFQHSYCSN+Y G +SGD I+++CDWCRS+
Sbjct: 41 MDLN--PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSG-ESGDAIIRVCDWCRSE 100
Query: 61 QITRRPASTTATNNTGTTSHKD-QITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
Q TRRPA+ TTS KD +IT+ RSS G PSPRPAPRRYKLLKDV+C
Sbjct: 101 QRTRRPAAFAT-----TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145
BLAST of CmUC05G080590 vs. ExPASy TrEMBL
Match:
A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 3.3e-24
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 0
Query: 5 PPPPLCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITR 64
P PP+CCLCGDVGFPA LFRC CS RFQHSYCSN+Y +S + I ++CDWCR ++
Sbjct: 14 PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY--GESAEAI-EVCDWCRCERRCG 73
Query: 65 RPASTTATNNTGTTSHKDQITQRRSSGPGFPSPRPAPRRYKLLKDVLC 113
R S + Q + R+SG G PSPR APRRYKLLKDV+C
Sbjct: 74 RRGSAARKFGVASQKSSGQDKRERNSG-GMPSPRVAPRRYKLLKDVMC 117
BLAST of CmUC05G080590 vs. TAIR 10
Match:
AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 97.1 bits (240), Expect = 9.8e-21
Identity = 54/125 (43.20%), Postives = 68/125 (54.40%), Query Frame = 0
Query: 9 LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQQITRRPAS 68
+CC+CGDVGF KLF C C RFQHSYCS++Y + DPI +ICDWC+ + +R A
Sbjct: 8 VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY--KEQADPI-KICDWCQCEAKSRTGAK 67
Query: 69 TTATNNTGTTSHK------------DQITQRRSSG---------PGFPSPRPAPRRYKLL 113
+ S++ +I Q SS G PSPRPA RRYKLL
Sbjct: 68 HGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLL 127
BLAST of CmUC05G080590 vs. TAIR 10
Match:
AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 89.0 bits (219), Expect = 2.7e-18
Identity = 52/131 (39.69%), Postives = 67/131 (51.15%), Query Frame = 0
Query: 9 LCCLCGDVGFPAKLFRCVSCSTRFQHSYCSNFYCGDQSGDPILQICDWCRSQ-------- 68
+CC+CGDVGF KLF C C RFQHSYCSN+Y Q +P +ICDWCRS
Sbjct: 4 VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY--GQFAEP-TEICDWCRSDDRKLSNVA 63
Query: 69 ----QITRRPASTTATNN--------------TGTTSHKDQITQR-RSSGPGFPSPRPAP 113
+++P+S+ N + DQ+ + G G SP+ A
Sbjct: 64 RHGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTAT 123
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022924678.1 | 4.1e-37 | 68.38 | uncharacterized protein LOC111432109 [Cucurbita moschata] | [more] |
XP_023526855.1 | 5.4e-37 | 68.38 | uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo] | [more] |
XP_004134287.1 | 2.0e-36 | 69.91 | uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical ... | [more] |
XP_008437789.1 | 4.6e-36 | 69.91 | PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo] | [more] |
KAA0048831.1 | 4.6e-36 | 69.91 | uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK2... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1ED69 | 2.0e-37 | 68.38 | uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC1114321... | [more] |
A0A0A0L5P1 | 9.9e-37 | 69.91 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1 | [more] |
A0A5D3DB67 | 2.2e-36 | 69.91 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3AVF1 | 2.2e-36 | 69.91 | uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=... | [more] |
A0A6J1IAU2 | 3.3e-24 | 55.56 | uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
Match Name | E-value | Identity | Description | |
AT3G60520.1 | 9.8e-21 | 43.20 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT1G02070.1 | 2.7e-18 | 39.69 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |