Sed0002749 (gene) Chayote v1

Overview
NameSed0002749
Typegene
OrganismSechium edule (Chayote v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit A-like
LocationLG12: 9283629 .. 9284179 (-)
RNA-Seq ExpressionSed0002749
SyntenySed0002749
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCTGAAGTGTGTCTAAATGATATTATTTTGGGAAAAGTGAAAAAAGAATTTTGCAGTTTCATAGGAAGAATTGTGAGAATTCAAAATAAAAGTTCACTTTGGTTCAAAAAGTGTACATCTTGCAATAGAAGAGTATATCCAATAGGAAATGCTATCACAAGTTCATGTTCAATATGTAATAATGAATCTATTTCATTCGTACGAAGATTCATGTTAAAAGTGATAGTTTCAGATGGGGATTCAGAAGCCTACATTACCATGTTTGATGCTACTGAGCATTTAACAGGTTGTAATGTAGTTGAGTATTTCAATAATCTATCTCAGGTAAGTTTTACATTTTTATTAAGTTTCATAAACATTTAATTTCATAAATGTCGTCCATTCTTTATTTGAATACACAAATATTACATGATATGATTTTTTTTTTGTCTCAGGTTCAAAATAAGGAGAGTAGTGAATATTACCAAAACTTGGTTTTAGCCGAAGACAAGAAATACTACTTTTTAGTTAGATTGAATAAGGATGGAGAAAGAGATAGATAG

mRNA sequence

ATGGAGTCTTCTGAAGTGTGTCTAAATGATATTATTTTGGGAAAAGTGAAAAAAGAATTTTGCAGTTTCATAGGAAGAATTGTGAGAATTCAAAATAAAAGTTCACTTTGGTTCAAAAAGTGTACATCTTGCAATAGAAGAGTATATCCAATAGGAAATGCTATCACAAGTTCATGTTCAATATGTAATAATGAATCTATTTCATTCGTACGAAGATTCATGTTAAAAGTGATAGTTTCAGATGGGGATTCAGAAGCCTACATTACCATGTTTGATGCTACTGAGCATTTAACAGGTTGTAATGTAGTTGAGTATTTCAATAATCTATCTCAGGTTCAAAATAAGGAGAGTAGTGAATATTACCAAAACTTGGTTTTAGCCGAAGACAAGAAATACTACTTTTTAGTTAGATTGAATAAGGATGGAGAAAGAGATAGATAG

Coding sequence (CDS)

ATGGAGTCTTCTGAAGTGTGTCTAAATGATATTATTTTGGGAAAAGTGAAAAAAGAATTTTGCAGTTTCATAGGAAGAATTGTGAGAATTCAAAATAAAAGTTCACTTTGGTTCAAAAAGTGTACATCTTGCAATAGAAGAGTATATCCAATAGGAAATGCTATCACAAGTTCATGTTCAATATGTAATAATGAATCTATTTCATTCGTACGAAGATTCATGTTAAAAGTGATAGTTTCAGATGGGGATTCAGAAGCCTACATTACCATGTTTGATGCTACTGAGCATTTAACAGGTTGTAATGTAGTTGAGTATTTCAATAATCTATCTCAGGTTCAAAATAAGGAGAGTAGTGAATATTACCAAAACTTGGTTTTAGCCGAAGACAAGAAATACTACTTTTTAGTTAGATTGAATAAGGATGGAGAAAGAGATAGATAG

Protein sequence

MESSEVCLNDIILGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDR
Homology
BLAST of Sed0002749 vs. NCBI nr
Match: XP_020242959.1 (replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-15
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 0

Query: 17  KKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLK 76
           K  FCSF+ +I+ I N    +F  CT C + V+ I N  T++C+ C N +  +  R+ L+
Sbjct: 251 KSMFCSFVAKIITIINAEEPFFSACTKCKKAVHEI-NGSTANCTNCKNGNSDWTIRYNLR 310

Query: 77  VIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLV 136
           + V+DG   AY+T+FD  E L GC  + Y     ++   ESSE YQ +    +K+Y FLV
Sbjct: 311 LEVNDGTDTAYVTLFDEAEILIGCTAIAYV----EMFEDESSECYQKMKSCLEKEYVFLV 370

Query: 137 RLNKDGERDR 147
           ++N+  E +R
Sbjct: 371 KINEKEESNR 375

BLAST of Sed0002749 vs. NCBI nr
Match: XP_016476407.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum])

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-15
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 0

Query: 20  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIV 79
           +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  R++LK+ V
Sbjct: 246 YFKFNARIKDIMNKDEPWYSSCKKCYKKVDVINN--ITKCHRCGVENVDYQERYILKLEV 305

Query: 80  SDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLVRLN 139
            D     Y+T+F++T +L GC+V  Y  ++S  QNKE S++Y+ LVL+ +KK+ FLV+++
Sbjct: 306 FDKKERYYVTLFESTRYLLGCDVTTYIQSIS--QNKEESKFYRKLVLSLEKKFTFLVKID 365

Query: 140 KDGERDR 147
                DR
Sbjct: 366 SKNGGDR 368

BLAST of Sed0002749 vs. NCBI nr
Match: KAG5512925.1 (hypothetical protein RHGRI_038656 [Rhododendron griersonianum])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-14
Identity = 40/130 (30.77%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 17  KKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLK 76
           KK +C F G I+ I+N   +W++ C  C+++V+ I     + C  C++ +I    R+M+K
Sbjct: 353 KKMYCYFRGTIISIENMEKIWYEACAKCHKKVHVI--ETKAECHKCHSTNIEISPRYMMK 412

Query: 77  VIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLV 136
           + V DG  +  +T+FDA + L GC + E+   L+  +  E++++Y++L+    ++Y F  
Sbjct: 413 LTVGDGVQQINVTLFDAAKRLVGCTISEFIKVLN--EEGENNKFYKHLINCYGERYVFFT 472

Query: 137 RLNKDGERDR 147
           R N   ++DR
Sbjct: 473 RTNMGNDKDR 478

BLAST of Sed0002749 vs. NCBI nr
Match: XP_016500091.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana tabacum])

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-14
Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 0

Query: 20  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIV 79
           +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  +++LK+ V
Sbjct: 57  YFKFNARIKDIMNKDEPWYSSCKKCYKKVDVINN--IAKCHRCGVENVDYQEKYILKLEV 116

Query: 80  SDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLVRLN 139
            D     Y+T+F++T +L GC+V  Y  ++S  Q KE S++Y+ LVL+ +K++ FLV+++
Sbjct: 117 FDKKERCYVTLFESTRYLLGCDVTTYIQSIS--QKKEESKFYRKLVLSREKEFTFLVKID 176

Query: 140 KDGERDR 147
                DR
Sbjct: 177 SKNGGDR 179

BLAST of Sed0002749 vs. NCBI nr
Match: OIT08014.1 (hypothetical protein A4A49_30234 [Nicotiana attenuata])

HSP 1 Score: 87.8 bits (216), Expect = 8.4e-14
Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 0

Query: 13  LGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRR 72
           +  + + +  F  +I  I NK   W+  C  C ++V  I +  T++C  CN E++ +  R
Sbjct: 130 ISTIPEIYHKFKAKITDIINKDEPWYSSCKKCFKKVDVIKD--TATCGSCNIENVDYESR 189

Query: 73  FMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKY 132
           + L++ VS G+    + +FDA E+L GC+V EY  ++     KE S YY+ LVL++DK++
Sbjct: 190 YCLRIEVSAGERRVRVILFDAAEYLFGCDVKEYIQSI--CTKKEESNYYRKLVLSKDKEF 249

Query: 133 YFLVRLN 140
            FLV+++
Sbjct: 250 IFLVKID 252

BLAST of Sed0002749 vs. ExPASy TrEMBL
Match: A0A1S4AI89 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107797997 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 0

Query: 20  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIV 79
           +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  R++LK+ V
Sbjct: 246 YFKFNARIKDIMNKDEPWYSSCKKCYKKVDVINN--ITKCHRCGVENVDYQERYILKLEV 305

Query: 80  SDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLVRLN 139
            D     Y+T+F++T +L GC+V  Y  ++S  QNKE S++Y+ LVL+ +KK+ FLV+++
Sbjct: 306 FDKKERYYVTLFESTRYLLGCDVTTYIQSIS--QNKEESKFYRKLVLSLEKKFTFLVKID 365

Query: 140 KDGERDR 147
                DR
Sbjct: 366 SKNGGDR 368

BLAST of Sed0002749 vs. ExPASy TrEMBL
Match: A0A1S4CG46 (replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=4097 GN=LOC107818567 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 0

Query: 20  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIV 79
           +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  +++LK+ V
Sbjct: 57  YFKFNARIKDIMNKDEPWYSSCKKCYKKVDVINN--IAKCHRCGVENVDYQEKYILKLEV 116

Query: 80  SDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLVRLN 139
            D     Y+T+F++T +L GC+V  Y  ++S  Q KE S++Y+ LVL+ +K++ FLV+++
Sbjct: 117 FDKKERCYVTLFESTRYLLGCDVTTYIQSIS--QKKEESKFYRKLVLSREKEFTFLVKID 176

Query: 140 KDGERDR 147
                DR
Sbjct: 177 SKNGGDR 179

BLAST of Sed0002749 vs. ExPASy TrEMBL
Match: A0A1J6IT36 (Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_30234 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-14
Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 0

Query: 13  LGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRR 72
           +  + + +  F  +I  I NK   W+  C  C ++V  I +  T++C  CN E++ +  R
Sbjct: 130 ISTIPEIYHKFKAKITDIINKDEPWYSSCKKCFKKVDVIKD--TATCGSCNIENVDYESR 189

Query: 73  FMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKY 132
           + L++ VS G+    + +FDA E+L GC+V EY  ++     KE S YY+ LVL++DK++
Sbjct: 190 YCLRIEVSAGERRVRVILFDAAEYLFGCDVKEYIQSI--CTKKEESNYYRKLVLSKDKEF 249

Query: 133 YFLVRLN 140
            FLV+++
Sbjct: 250 IFLVKID 252

BLAST of Sed0002749 vs. ExPASy TrEMBL
Match: A0A1S4BAI4 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107806315 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.3e-14
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 0

Query: 20  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIV 79
           +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  R++LK+ V
Sbjct: 285 YFKFNARIKDIMNKDEPWYSSCKKCYKKVDVINN--IAKCHHCGVENVDYQERYILKLEV 344

Query: 80  SDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFLVRLN 139
            D     Y+T+F++T +L GC+V  Y  ++S  Q KE  ++Y+ LVL+ +K++ FLV+++
Sbjct: 345 FDKKERCYVTLFESTRYLLGCDVTTYIQSIS--QKKEEFKFYRKLVLSREKEFTFLVKID 404

Query: 140 KDGERDR 147
                DR
Sbjct: 405 SKNGGDR 407

BLAST of Sed0002749 vs. ExPASy TrEMBL
Match: A0A6A4KQR7 (Rep_fac-A_C domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_22861 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 37/131 (28.24%), Postives = 76/131 (58.02%), Query Frame = 0

Query: 16  VKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFML 75
           ++K +C F G I+ I+N   +W++ C  C+++V+ I     + C  C + +I    R+M+
Sbjct: 183 MRKMYCYFRGTIISIENMEKIWYEACAKCHKKVHVI--ETKAECHKCRSTNIEISPRYMM 242

Query: 76  KVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSEYYQNLVLAEDKKYYFL 135
           K+ V DG  +  +T+FDA + L GC + E+   L+  +  E++++Y++L+    ++Y F 
Sbjct: 243 KLTVGDGVQQINVTLFDAAKRLVGCTISEFIKVLN--EEGENNKFYKHLINCYGERYMFF 302

Query: 136 VRLNKDGERDR 147
            + N   ++D+
Sbjct: 303 TKTNMGNDKDQ 309

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_020242959.12.0e-1536.92replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis][more]
XP_016476407.15.8e-1536.22PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana ta... [more]
KAG5512925.12.2e-1430.77hypothetical protein RHGRI_038656 [Rhododendron griersonianum][more]
XP_016500091.14.9e-1433.86PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana ta... [more]
OIT08014.18.4e-1433.86hypothetical protein A4A49_30234 [Nicotiana attenuata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4AI892.8e-1536.22replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=... [more]
A0A1S4CG462.4e-1433.86replication protein A 70 kDa DNA-binding subunit A-like OS=Nicotiana tabacum OX=... [more]
A0A1J6IT364.0e-1433.86Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_3... [more]
A0A1S4BAI45.3e-1433.86replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=... [more]
A0A6A4KQR71.5e-1328.24Rep_fac-A_C domain-containing protein (Fragment) OS=Rhododendron williamsianum O... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 4..145
e-value: 5.0E-18
score: 67.1
NoneNo IPR availablePANTHERPTHR23273:SF46REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKEcoord: 5..140
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 5..140
IPR013955Replication factor A, C-terminalPFAMPF08646Rep_fac-A_Ccoord: 21..141
e-value: 1.6E-10
score: 40.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 15..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002749.1Sed0002749.1mRNA