Tan0008379 (gene) Snake gourd v1

Overview


Name	Tan0008379
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 766975 .. 768285 (+)
RNA-Seq Expression	Tan0008379
Synteny	Tan0008379

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAATCTATACATAAAAATTTAAAAACATTAAAATATGAAACTTAAAAGGGGAAATTGGAGCCCCCACCAAGAAACAGCTCCGAATTCTTGTTCATTCCATCTTCTTCTTTTTCTTATTATTATTGTAATCTCACAGTGATGGCACTGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCAATTTTTCTCTTTTGAAATCTGGTGTTTCAGTTTCAGTTAAGCCTTTAAGCAGAATTTGGATGCTCAAACCTTCAAAGTTTCCTCTCAACAAGTCTCTTTTCCCACTGCAGATCAGATCTTCCATTAAGAACAAGGTCAACTTCTTCTCTCACATATTCTCTTTTCATTTTCTGTCATGTTTCTTCATCATCTTTTCTTTCTCACCTTCTTCTTCTTTCATACTCTTGTCTGCAACTGCATCAGTTTCTTTTACAACAAACAACTTTATAGAAGTAAATAATTGTACTAAGGGAATCTTATCCTCTCCCTCTACTAACCGTTGATACACGATCCAAGTCATTAATTTTGTTCTATTTGTTATTATCTTTATTCTTACCGAATCAATGTAGATAGTTGATAGGATGACTCTGTTTTTATGAATCATTCAATCCTAGAATGCTAGTGATTAGTACCTGATTATCAAGTTTGACGAAGAACAAATAGGTTTTCGAGGATCAATCGGAGGGAGTGATTTGCTACGCAGACGAGAACGGGGAGATCATCTGCGAAGGATACGATGAGGGTCCTCGCTTTCACCAAAACCTTTCCGAAAAAGGCAACCATCAAAGGTAAATGAATCACTGTTCTTAACCTACAAAAAGTTCTGAAAAGAAATTTTGTGAGAGCTGTTGGATTGATACATGTTTTTTCTTTTTGTTTCATCTTTTGGCCACAATTAGAGAGACAGAGATTATTGATCTCCTACTAAAACAGAGTTGGATTCATCTAGGAAAAGGTGGTGGAGGAGATCTCAGGCATGCTGAAAAGGGTGTTGCTGTTAAAAAAGACTTGAACATTAATGGCTTCAACTCGTTCTACTAATCCAAATATGGTCTAACTCTTTCGGGTCATACTCAAACGTCGAATGTATGTACTTCCTATGTCGAATGTATACAGACATTGTTTTAATTCGAGTAGTTTTGAGTAAATGTACTTTCTTCTGTATCTGAATCACATAATCAAATTCACTGCTCAAAATTTCATAGTAATTTCCTCATGGTAGTGAAATTCAAACCCAAAATTGCATAGCTTACACCCTCCAATTCATAAACTTCTTGATCAATGGGGTAGTTCTATCATATTTCAAC

mRNA sequence

TTTTAATCTATACATAAAAATTTAAAAACATTAAAATATGAAACTTAAAAGGGGAAATTGGAGCCCCCACCAAGAAACAGCTCCGAATTCTTGTTCATTCCATCTTCTTCTTTTTCTTATTATTATTGTAATCTCACAGTGATGGCACTGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCAATTTTTCTCTTTTGAAATCTGGTGTTTCAGTTTCAGTTAAGCCTTTAAGCAGAATTTGGATGCTCAAACCTTCAAAGTTTCCTCTCAACAAGTCTCTTTTCCCACTGCAGATCAGATCTTCCATTAAGAACAAGGTTTTCGAGGATCAATCGGAGGGAGTGATTTGCTACGCAGACGAGAACGGGGAGATCATCTGCGAAGGATACGATGAGGGTCCTCGCTTTCACCAAAACCTTTCCGAAAAAGGCAACCATCAAAGGAAAAGGTGGTGGAGGAGATCTCAGGCATGCTGAAAAGGGTGTTGCTGTTAAAAAAGACTTGAACATTAATGGCTTCAACTCGTTCTACTAATCCAAATATGGTCTAACTCTTTCGGGTCATACTCAAACGTCGAATGTATGTACTTCCTATGTCGAATGTATACAGACATTGTTTTAATTCGAGTAGTTTTGAGTAAATGTACTTTCTTCTGTATCTGAATCACATAATCAAATTCACTGCTCAAAATTTCATAGTAATTTCCTCATGGTAGTGAAATTCAAACCCAAAATTGCATAGCTTACACCCTCCAATTCATAAACTTCTTGATCAATGGGGTAGTTCTATCATATTTCAAC

Coding sequence (CDS)

ATGGCACTGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCAATTTTTCTCTTTTGAAATCTGGTGTTTCAGTTTCAGTTAAGCCTTTAAGCAGAATTTGGATGCTCAAACCTTCAAAGTTTCCTCTCAACAAGTCTCTTTTCCCACTGCAGATCAGATCTTCCATTAAGAACAAGGTTTTCGAGGATCAATCGGAGGGAGTGATTTGCTACGCAGACGAGAACGGGGAGATCATCTGCGAAGGATACGATGAGGGTCCTCGCTTTCACCAAAACCTTTCCGAAAAAGGCAACCATCAAAGGAAAAGGTGGTGGAGGAGATCTCAGGCATGCTGA

Protein sequence

MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKVFEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWRRSQAC

Homology

[Close]

BLAST of Tan0008379 vs. NCBI nr
Match: XP_031744837.1 (uncharacterized protein LOC101211901 isoform X2 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-39
Identity = 88/111 (79.28%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALTSSSSSSSSSLNFSLLK+G+SVS KP++RIWM+KP++ PL K+ F L+IRSS+KNKV
Sbjct: 1   MALTSSSSSSSSSLNFSLLKTGLSVSFKPITRIWMVKPTRLPL-KNSFSLRIRSSMKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWRRSQAC 112
           FEDQSEGVICYADENGEIICEGYDEGPRFHQN+SEKGN+QR+R W R++ C
Sbjct: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNVSEKGNNQRERCWGRAEPC 110

[Close]

BLAST of Tan0008379 vs. NCBI nr
Match: XP_008462240.1 (PREDICTED: uncharacterized protein LOC103500644 [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALTSSSSSSSS LNFS LK+G+SVS KP++RIWMLKP++FPL  SL PL+IRSSIKNKV
Sbjct: 1   MALTSSSSSSSSPLNFSHLKTGLSVSFKPVTRIWMLKPTRFPLKNSL-PLRIRSSIKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRK 103
           FEDQSEGVICYADENGEIICEGYDEGPRFHQN+SEKGNHQR+
Sbjct: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNVSEKGNHQRE 101

[Close]

BLAST of Tan0008379 vs. NCBI nr
Match: XP_022149736.1 (uncharacterized protein LOC111018083 isoform X2 [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 5.3e-37
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MALT-SSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSK-FPLNKSLFPLQIRSSIKN 60
           MALT SSSSSSSSS N  LLKSG  +S+KP+SR+WML+P+K FPL KSL PLQIRSSIKN
Sbjct: 1   MALTSSSSSSSSSSFNVCLLKSG--LSIKPMSRVWMLRPTKFFPLKKSL-PLQIRSSIKN 60

Query: 61  KVFEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWR 107
           KVFEDQSEGVICYADENGEIICEGYDEGPRFHQN SEK NHQRKRWWR
Sbjct: 61  KVFEDQSEGVICYADENGEIICEGYDEGPRFHQNPSEKANHQRKRWWR 105

[Close]

BLAST of Tan0008379 vs. NCBI nr
Match: XP_023548904.1 (uncharacterized protein LOC111807416 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-37
Identity = 88/106 (83.02%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALT     SSSS N SLLKSG+SVS KP+SRIWMLKP+KFPL KSL PLQIRSSIKNKV
Sbjct: 1   MALT-CCCCSSSSFNVSLLKSGLSVSAKPISRIWMLKPAKFPLKKSL-PLQIRSSIKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWR 107
           FEDQSEGVICY DENGEI+CEGYDEGPRFH NL EKGNHQRKRW R
Sbjct: 61  FEDQSEGVICYTDENGEIVCEGYDEGPRFHPNLPEKGNHQRKRWRR 104

[Close]

BLAST of Tan0008379 vs. NCBI nr
Match: XP_022953823.1 (uncharacterized protein LOC111456239 isoform X2 [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALT      SSS N SLLKSG+SVS KP+SRIWMLKP+KFPL KSL PLQIRSSIKNKV
Sbjct: 1   MALT-CCCCCSSSFNVSLLKSGLSVSAKPISRIWMLKPTKFPLKKSL-PLQIRSSIKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWR 107
           FEDQSEGVICY DENGEI+CEGYDEGPRFH NL EKGNHQRKRW R
Sbjct: 61  FEDQSEGVICYTDENGEIVCEGYDEGPRFHPNLPEKGNHQRKRWRR 104

[Close]

BLAST of Tan0008379 vs. ExPASy TrEMBL
Match: A0A1S3CGF5 (uncharacterized protein LOC103500644 OS=Cucumis melo OX=3656 GN=LOC103500644 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.2e-38
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALTSSSSSSSS LNFS LK+G+SVS KP++RIWMLKP++FPL  SL PL+IRSSIKNKV
Sbjct: 1   MALTSSSSSSSSPLNFSHLKTGLSVSFKPVTRIWMLKPTRFPLKNSL-PLRIRSSIKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRK 103
           FEDQSEGVICYADENGEIICEGYDEGPRFHQN+SEKGNHQR+
Sbjct: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNVSEKGNHQRE 101

[Close]

BLAST of Tan0008379 vs. ExPASy TrEMBL
Match: A0A6J1D9A7 (uncharacterized protein LOC111018083 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018083 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.6e-37
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MALT-SSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSK-FPLNKSLFPLQIRSSIKN 60
           MALT SSSSSSSSS N  LLKSG  +S+KP+SR+WML+P+K FPL KSL PLQIRSSIKN
Sbjct: 1   MALTSSSSSSSSSSFNVCLLKSG--LSIKPMSRVWMLRPTKFFPLKKSL-PLQIRSSIKN 60

Query: 61  KVFEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWR 107
           KVFEDQSEGVICYADENGEIICEGYDEGPRFHQN SEK NHQRKRWWR
Sbjct: 61  KVFEDQSEGVICYADENGEIICEGYDEGPRFHQNPSEKANHQRKRWWR 105

[Close]

BLAST of Tan0008379 vs. ExPASy TrEMBL
Match: A0A6J1GPD7 (uncharacterized protein LOC111456239 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456239 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALT      SSS N SLLKSG+SVS KP+SRIWMLKP+KFPL KSL PLQIRSSIKNKV
Sbjct: 1   MALT-CCCCCSSSFNVSLLKSGLSVSAKPISRIWMLKPTKFPLKKSL-PLQIRSSIKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWR 107
           FEDQSEGVICY DENGEI+CEGYDEGPRFH NL EKGNHQRKRW R
Sbjct: 61  FEDQSEGVICYTDENGEIVCEGYDEGPRFHPNLPEKGNHQRKRWRR 104

[Close]

BLAST of Tan0008379 vs. ExPASy TrEMBL
Match: A0A6J1JXJ2 (uncharacterized protein LOC111488739 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488739 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.9e-36
Identity = 86/106 (81.13%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALT      SSS N SLLKSG+SVS KP+SRIWMLKP+KFPL KSL PLQIRSSIKNKV
Sbjct: 1   MALT----CCSSSFNVSLLKSGLSVSAKPISRIWMLKPTKFPLKKSL-PLQIRSSIKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRKRWWR 107
           FEDQSEGVICY DENGEI+CEGYDEGPRF  NL EKGNHQRKRW R
Sbjct: 61  FEDQSEGVICYTDENGEIVCEGYDEGPRFQPNLPEKGNHQRKRWRR 101

[Close]

BLAST of Tan0008379 vs. ExPASy TrEMBL
Match: A0A0A0K9A8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448010 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 82/102 (80.39%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MALTSSSSSSSSSLNFSLLKSGVSVSVKPLSRIWMLKPSKFPLNKSLFPLQIRSSIKNKV 60
           MALT  SSSSSSSLNFSLLK+G+SVS KP++RIWM+KP++ PL K+ F L+IRSS+KNKV
Sbjct: 1   MALT--SSSSSSSLNFSLLKTGLSVSFKPITRIWMVKPTRLPL-KNSFSLRIRSSMKNKV 60

Query: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNLSEKGNHQRK 103
           FEDQSEGVICYADENGEIICEGYDEGPRFHQN+SEKGN+QR+
Sbjct: 61  FEDQSEGVICYADENGEIICEGYDEGPRFHQNVSEKGNNQRE 99

[Close]

BLAST of Tan0008379 vs. TAIR 10
Match: AT3G14280.1 (unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 49 PLQIRSSIKNKVFEDQSEGVICYADENGEIICEGYDEGPR 89
          P  IR S KN VFED  +G+ICY D+NGE+ICEGYDEGPR
Sbjct: 45 PQPIRYSTKNIVFEDPIQGIICYTDDNGEVICEGYDEGPR 84

The following BLAST results are available for this feature:

BLAST of Tan0008379 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008379 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744837.1	3.3e-39	79.28	uncharacterized protein LOC101211901 isoform X2 [Cucumis sativus]	[more]
XP_008462240.1	1.1e-37	85.29	PREDICTED: uncharacterized protein LOC103500644 [Cucumis melo]	[more]
XP_022149736.1	5.3e-37	84.26	uncharacterized protein LOC111018083 isoform X2 [Momordica charantia]	[more]
XP_023548904.1	7.0e-37	83.02	uncharacterized protein LOC111807416 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022953823.1	2.7e-36	82.08	uncharacterized protein LOC111456239 isoform X2 [Cucurbita moschata]	[more]

BLAST of Tan0008379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGF5	5.2e-38	85.29	uncharacterized protein LOC103500644 OS=Cucumis melo OX=3656 GN=LOC103500644 PE=...	[more]
A0A6J1D9A7	2.6e-37	84.26	uncharacterized protein LOC111018083 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1GPD7	1.3e-36	82.08	uncharacterized protein LOC111456239 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JXJ2	2.9e-36	81.13	uncharacterized protein LOC111488739 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0K9A8	1.6e-34	80.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448010 PE=4 SV=1	[more]

BLAST of Tan0008379 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14280.1	2.4e-11	70.00	unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34206:SF1	OS06G0193300 PROTEIN	coord: 1..141
None	No IPR available	PANTHER	PTHR34206	OS06G0193300 PROTEIN	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008379.1	Tan0008379.1	mRNA
Tan0008379.2	Tan0008379.2	mRNA