Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCATCATCTCTATCTTCAATACGAGCACAACAGAAACGATAACCATCTTCATCTTAAATGTGGTCATCATCCTTATCTTCAATGTGACACAGTAGAAATGATCATCATCTTCATCTTTAATACGACGAAACAAAGGCGGTCATCATCTTCATCTTCAATGCGGCGCAGTCTAGGCGATCATCATCTTCAATGTGGCACAGACGATCATTCTCTTCAATGCGGCACACACGATAATGAACAAACTCCAAACGTTGATGAAGCAGCAGGGCGTCATGATAGAGTTGCATAG
mRNA sequence
ATGGACCATCATCTCTATCTTCAATACGAGCACAACAGAAACGATAACCATCTTCATCTTAAATGTGGTCATCATCCTTATCTTCAATGTGACACAGTAGAAATGATCATCATCTTCATCTTTAATACGACGAAACAAAGGCGGTCATCATCTTCATCTTCAATGCGGCGCAGTCTAGGCGATCATCATCTTCAATGTGGCACAGACGATCATTCTCTTCAATGCGGCACACACGATAATGAACAAACTCCAAACGTTGATGAAGCAGCAGGGCGTCATGATAGAGTTGCATAG
Coding sequence (CDS)
ATGGACCATCATCTCTATCTTCAATACGAGCACAACAGAAACGATAACCATCTTCATCTTAAATGTGGTCATCATCCTTATCTTCAATGTGACACAGTAGAAATGATCATCATCTTCATCTTTAATACGACGAAACAAAGGCGGTCATCATCTTCATCTTCAATGCGGCGCAGTCTAGGCGATCATCATCTTCAATGTGGCACAGACGATCATTCTCTTCAATGCGGCACACACGATAATGAACAAACTCCAAACGTTGATGAAGCAGCAGGGCGTCATGATAGAGTTGCATAG
Protein sequence
MDHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGDHHLQCGTDDHSLQCGTHDNEQTPNVDEAAGRHDRVA
Homology
BLAST of IVF0008614 vs. ExPASy TrEMBL
Match:
A0A5A7UC34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001950 PE=4 SV=1)
HSP 1 Score: 125.9 bits (315), Expect = 8.9e-26
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0
Query: 13 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGDHHLQCGTDDHS 72
RNDNHLHLKCGHHPYLQCDTVEMIIIFIFN TKQRR SSSSSM RS DHHLQCG DDHS
Sbjct: 273 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSSMWRSPSDHHLQCGIDDHS 332
Query: 73 LQCGTHDNEQT 84
LQ GTH N+QT
Sbjct: 333 LQWGTH-NDQT 342
BLAST of IVF0008614 vs. ExPASy TrEMBL
Match:
A0A5A7UDW0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00100 PE=4 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 9.9e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0
Query: 1 MDHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSS 54
MDHH+YLQY HN+NDNHLHLKCG H +LQC+TVEMIIIFIFNT +QRRSSSSS
Sbjct: 197 MDHHIYLQYGHNKNDNHLHLKCGRHLHLQCNTVEMIIIFIFNTAQQRRSSSSS 249
BLAST of IVF0008614 vs. ExPASy TrEMBL
Match:
A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 40/68 (58.82%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 2 DHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGD 61
DHHL LQ N D HLHL+ LQ DT E II+FIFN +Q+RSSSSSSM RS D
Sbjct: 211 DHHLRLQCCRNGED-HLHLR------LQHDTTERIILFIFNVAQQKRSSSSSSMWRSRND 270
Query: 62 H--HLQCG 68
HLQCG
Sbjct: 271 RHLHLQCG 271
BLAST of IVF0008614 vs. ExPASy TrEMBL
Match:
A0A5A7V172 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00360 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 6.0e-06
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0
Query: 12 NRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRS 50
+R+D+HLHLK G H +LQC+TVEMIIIFIFNT +QR+S
Sbjct: 938 SRDDHHLHLKYGRHLHLQCNTVEMIIIFIFNTVQQRQS 975
BLAST of IVF0008614 vs. ExPASy TrEMBL
Match:
A0A5D3BML3 (Hemolysin expression modulating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00080 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0
Query: 12 NRNDNHLHLKCGHHPYLQCDTVEMIIIFIFN-------TTKQRRSSSSSSMRRSLGDHHL 71
+R D+HLHL L +E III+IF+ + Q+R SSSSM+ +GDHHL
Sbjct: 101 SREDHHLHL-------LTFVVIERIIIYIFSHVCRWSLSQMQQRRRSSSSMQHGVGDHHL 160
Query: 72 QCGTDDHSLQCGTHDN 81
+CGT +H L+CG +D+
Sbjct: 161 KCGTGNHHLECGAYDH 169
BLAST of IVF0008614 vs. NCBI nr
Match:
KAA0051997.1 (hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK04562.1 hypothetical protein E5676_scaffold409G001950 [Cucumis melo var. makuwa])
HSP 1 Score: 126 bits (317), Expect = 1.53e-32
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0
Query: 13 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGDHHLQCGTDDHS 72
RNDNHLHLKCGHHPYLQCDTVEMIIIFIFN TKQRR SSSSSM RS DHHLQCG DDHS
Sbjct: 273 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSSMWRSPSDHHLQCGIDDHS 332
Query: 73 LQCGTHDNEQT 83
LQ GTH N+QT
Sbjct: 333 LQWGTH-NDQT 342
BLAST of IVF0008614 vs. NCBI nr
Match:
KAA0051895.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ99890.1 gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 96.7 bits (239), Expect = 1.04e-21
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0
Query: 1 MDHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSS 53
MDHH+YLQY HN+NDNHLHLKCG H +LQC+TVEMIIIFIFNT +QRRSSSSS
Sbjct: 197 MDHHIYLQYGHNKNDNHLHLKCGRHLHLQCNTVEMIIIFIFNTAQQRRSSSSS 249
BLAST of IVF0008614 vs. NCBI nr
Match:
KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])
HSP 1 Score: 61.2 bits (147), Expect = 2.03e-08
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query: 2 DHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGD 61
DHHL LQ N D HLHL+ LQ DT E II+FIFN +Q+RSSSSSSM RS D
Sbjct: 211 DHHLRLQCCRNGED-HLHLR------LQHDTTERIILFIFNVAQQKRSSSSSSMWRSRND 270
Query: 62 HHLQCGTDDHSLQCG 76
HL LQCG
Sbjct: 271 RHLH-------LQCG 271
BLAST of IVF0008614 vs. NCBI nr
Match:
KAA0059585.1 (uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa] >TYK25791.1 uncharacterized protein E5676_scaffold640G00360 [Cucumis melo var. makuwa])
HSP 1 Score: 60.1 bits (144), Expect = 6.14e-08
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 13 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRS 49
R+D+HLHLK G H +LQC+TVEMIIIFIFNT +QR+S
Sbjct: 939 RDDHHLHLKYGRHLHLQCNTVEMIIIFIFNTVQQRQS 975
BLAST of IVF0008614 vs. NCBI nr
Match:
TYK00348.1 (hemolysin expression modulating protein [Cucumis melo var. makuwa])
HSP 1 Score: 59.3 bits (142), Expect = 6.68e-08
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0
Query: 13 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFN-------TTKQRRSSSSSSMRRSLGDHHLQ 72
R D+HLHL L +E III+IF+ + Q+R SSSSM+ +GDHHL+
Sbjct: 102 REDHHLHL-------LTFVVIERIIIYIFSHVCRWSLSQMQQRRRSSSSMQHGVGDHHLK 161
Query: 73 CGTDDHSLQCGTHD 79
CGT +H L+CG +D
Sbjct: 162 CGTGNHHLECGAYD 168
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UC34 | 8.9e-26 | 87.32 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UDW0 | 9.9e-17 | 83.02 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7U1J1 | 4.6e-06 | 58.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7V172 | 6.0e-06 | 71.05 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BML3 | 1.0e-05 | 43.42 | Hemolysin expression modulating protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051997.1 | 1.53e-32 | 87.32 | hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK0456... | [more] |
| KAA0051895.1 | 1.04e-21 | 83.02 | gag protease polyprotein [Cucumis melo var. makuwa] >TYJ99890.1 gag protease pol... | [more] |
| KAA0047505.1 | 2.03e-08 | 54.67 | hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa] | [more] |
| KAA0059585.1 | 6.14e-08 | 72.97 | uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa] >TYK25... | [more] |
| TYK00348.1 | 6.68e-08 | 44.59 | hemolysin expression modulating protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
