IVF0002706.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0002706.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U5 small nuclear ribonucleoprotein 40 kDa protein
Location	chr10: 4056038 .. 4057072 (-)
Sequence length	1035
RNA-Seq Expression	IVF0002706.1
Synteny	IVF0002706.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATACAATCCTCCTCAAGGTCCTGGGCCGAATGGGAAACAGCGAACCTCAAGTCTGGAATCACCGATCATGTTGTTATCAGGCCATCAGAGTGCCATATATACATTAAAGTTCAATCCAGATGGAAACGTGATTGCCTCTGGGTCTCACGACAAGGAAATTTTTCTATGGAATGTACATGGGGATTGCAAGAATTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTTGATCTTCATTGGACTGTTGATGGATCTCAGATAGTTAGTGCCAGTCCTGATAAAACATTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAACATTCCTCATTTGTCAATTCATGTTGTCCCACAAGAAGAGGGCCGCCACTAATTGTCAGTGGATCGGATGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCTATTCAAACATTCCCGGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGACAAGATCTTCACAGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAACGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCGTATGCACCTCAAAACCGATGTGTGAAGATATTTGAAGGGCACCAACATAACTTTGAAAAGAACCTACTGAAATGTAGCTGGTCTGCTGATGGTAGTAAGGTCACTGCAGGCAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATATTGTACAAGCTTCCTGGCCATACTGGATCTGTCAACGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

mRNA sequence

ATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATACAATCCTCCTCAAGGTCCTGGGCCGAATGGGAAACAGCGAACCTCAAGTCTGGAATCACCGATCATGTTGTTATCAGGCCATCAGAGTGCCATATATACATTAAAGTTCAATCCAGATGGAAACGTGATTGCCTCTGGGTCTCACGACAAGGAAATTTTTCTATGGAATGTACATGGGGATTGCAAGAATTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTTGATCTTCATTGGACTGTTGATGGATCTCAGATAGTTAGTGCCAGTCCTGATAAAACATTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAACATTCCTCATTTGTCAATTCATGTTGTCCCACAAGAAGAGGGCCGCCACTAATTGTCAGTGGATCGGATGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCTATTCAAACATTCCCGGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGACAAGATCTTCACAGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAACGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCGTATGCACCTCAAAACCGATGTGTGAAGATATTTGAAGGGCACCAACATAACTTTGAAAAGAACCTACTGAAATGTAGCTGGTCTGCTGATGGTAGTAAGGTCACTGCAGGCAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATATTGTACAAGCTTCCTGGCCATACTGGATCTGTCAACGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

Coding sequence (CDS)

ATGCAAGTCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCTCGGCCAATGGAATGGTCAACTGTTCCATACAATCCTCCTCAAGGTCCTGGGCCGAATGGGAAACAGCGAACCTCAAGTCTGGAATCACCGATCATGTTGTTATCAGGCCATCAGAGTGCCATATATACATTAAAGTTCAATCCAGATGGAAACGTGATTGCCTCTGGGTCTCACGACAAGGAAATTTTTCTATGGAATGTACATGGGGATTGCAAGAATTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTTGATCTTCATTGGACTGTTGATGGATCTCAGATAGTTAGTGCCAGTCCTGATAAAACATTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAACATTCCTCATTTGTCAATTCATGTTGTCCCACAAGAAGAGGGCCGCCACTAATTGTCAGTGGATCGGATGATGGAACTGCAAAACTTTGGGATATGCGTCAAAGGGGCGCTATTCAAACATTCCCGGATAAATATCAGATTACAGCAGTAAGTTTCTCAGATGCATCAGACAAGATCTTCACAGGTGGAATTGACAACGATGTTAAGGTTTGGGATTTGCGCAAAGGTGAAGTTATGATGACACTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCTTATCTCCTCACTAACGGAATGGATTGCAAGCTCTGCATATGGGACATGCGCCCGTATGCACCTCAAAACCGATGTGTGAAGATATTTGAAGGGCACCAACATAACTTTGAAAAGAACCTACTGAAATGTAGCTGGTCTGCTGATGGTAGTAAGGTCACTGCAGGCAGTTCAGATCGGATGGTTTACATATGGGATACAACGTCTCGACGAATATTGTACAAGCTTCCTGGCCATACTGGATCTGTCAACGAGTGTGTCTTCCATCCCAGTGAGCCTATTGTTGCATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

Protein sequence

MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI

Homology

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BLAST of IVF0002706.1 vs. ExPASy Swiss-Prot
Match: Q96DI7 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.4e-123
Identity = 188/309 (60.84%), Postives = 248/309 (80.26%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107

Query: 96  HKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 335
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

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BLAST of IVF0002706.1 vs. ExPASy Swiss-Prot
Match: Q6PE01 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 2.4e-123
Identity = 186/309 (60.19%), Postives = 248/309 (80.26%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 288

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 335
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRR+LYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of IVF0002706.1 vs. ExPASy Swiss-Prot
Match: Q2HJH6 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 3.2e-123
Identity = 187/309 (60.52%), Postives = 248/309 (80.26%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKN 288

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 335
           LL+CSWS DGSK+ AGS+DR VY+WDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of IVF0002706.1 vs. ExPASy Swiss-Prot
Match: Q5RF51 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 1.3e-121
Identity = 186/309 (60.19%), Postives = 247/309 (79.94%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLLSGH+  +Y  KF+P+G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKG 107

Query: 96  HKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           +  AV++LH+  DGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 YSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSS 335
           LL+CSWS DGSK+ AGS+DR V +WDTTSRRILYKLPGH GS+NE  FHP EPI+ S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]

BLAST of IVF0002706.1 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.2e-111
Identity = 179/310 (57.74%), Postives = 230/310 (74.19%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G +RTS LE PIM L GH+  IY+ KFN  G  +ASG  DKEIFLWNV+G+C N+ VL+G
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 96  HKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           HK  +L+LHW+ D ++I +A  DK++  WD   G+ IK++ EHS  VNSCCP RRGPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 215
            SGSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 216 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 275
            + TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283

Query: 276 NLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCS 335
           NL+K SWS DG ++  GSSDR VYIWDT ++++ Y LPGH+G+VNE  FHP+EPI+ASCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343

Query: 336 SDKQIYLGEI 345
           SDK IYLGEI
Sbjct: 344 SDKTIYLGEI 353

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BLAST of IVF0002706.1 vs. ExPASy TrEMBL
Match: A0A5A7SYI1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002400 PE=4 SV=1)

HSP 1 Score: 733.8 bits (1893), Expect = 3.3e-208
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. ExPASy TrEMBL
Match: A0A1S3BDK5 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 733.8 bits (1893), Expect = 3.3e-208
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. ExPASy TrEMBL
Match: A0A0A0KTB1 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 728.4 bits (1879), Expect = 1.4e-206
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPN KQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. ExPASy TrEMBL
Match: A0A6J1HV60 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466479 PE=4 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 1.2e-202
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. ExPASy TrEMBL
Match: A0A6J1G1Q0 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111449859 PE=4 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 1.2e-202
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 345
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA0034179.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa] >TYK15740.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 726 bits (1873), Expect = 1.33e-264
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. NCBI nr
Match: XP_004135336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 hypothetical protein Csa_008253 [Cucumis sativus])

HSP 1 Score: 720 bits (1859), Expect = 1.82e-262
Identity = 341/344 (99.13%), Postives = 342/344 (99.42%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPN KQRTSSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNV+ASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. NCBI nr
Match: XP_038877892.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida])

HSP 1 Score: 712 bits (1837), Expect = 4.11e-259
Identity = 338/344 (98.26%), Postives = 340/344 (98.84%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPSEGENALATVGPRPMEWSTVPYN PQG GPNGKQR SSLESPIMLLSGHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNAPQGHGPNGKQRRSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNPDGNVIASGSHDKEIFLWNV GDCKNFMVLRGHKNAVLDLHWT+DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVRGDCKNFMVLRGHKNAVLDLHWTIDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVE+GKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVESGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG6573599.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012682.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 707 bits (1825), Expect = 2.78e-257
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 707 bits (1825), Expect = 2.78e-257
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60
           MQVPS GENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120
           KFNP G+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344
           DTTSRRILYKLPGHTGSVNECVFHPSEPIV SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of IVF0002706.1 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 651.0 bits (1678), Expect = 5.4e-187
Identity = 296/337 (87.83%), Postives = 316/337 (93.77%), Query Frame = 0


Query: 8   ENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTLKFNPDGN 67
           EN  A  GPRPMEWSTVP++  QGPGPNGK RTSSLE+PIMLLSGH SA+YT+KFNP G 
Sbjct: 7   ENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGT 66

Query: 68  VIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKTLRAWDVE 127
           +IASGSHD+EIFLW VHGDCKNFMVL+GHKNA+LDLHWT DGSQIVSASPDKT+RAWDVE
Sbjct: 67  LIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVE 126

Query: 128 TGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 187
           TGKQIKKMAEHSSFVNSCCPTRRGPPLI+SGSDDGTAKLWDMRQRGAIQTFPDKYQITAV
Sbjct: 127 TGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 186

Query: 188 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKL 247
           SFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTNGMD KL
Sbjct: 187 SFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246

Query: 248 CIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRI 307
           C+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DG+KVTAGSSDRMV+IWDTTSRR 
Sbjct: 247 CVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRT 306

Query: 308 LYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 345
           +YKLPGHTGSVNECVFHP+EPI+ SCSSDK IYLGEI
Sbjct: 307 IYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]

BLAST of IVF0002706.1 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 165.2 bits (417), Expect = 9.0e-41
Identity = 91/296 (30.74%), Postives = 155/296 (52.36%), Query Frame = 0


Query: 50  LSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVH----GDCKNFMVLRGHKNAVLDLHW 109
           L+ H  A+ ++KF+ DG ++AS S DK I  + ++       +      GH+N + D+ +
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 110 TVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 169
           + D   IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 289
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 290 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQI 340
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP+E ++AS S DK +
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309

[Close]

BLAST of IVF0002706.1 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-30
Identity = 82/296 (27.70%), Postives = 129/296 (43.58%), Query Frame = 0


Query: 49  LLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVD 108
           +L GH+ A+   +FN DGN   +   D+ I LWN H         + H   V D+H T D
Sbjct: 13  ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGIL-IKTYKSHGREVRDVHVTSD 72

Query: 109 GSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWD 168
            ++  S   D+ +  WDV TG+ I+K   H   VN+         ++VS   D + ++WD
Sbjct: 73  NAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNA-VKFNDSSSVVVSAGFDRSLRVWD 132

Query: 169 MRQRGA-----IQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 228
            R         I TF D    T +S      +I  G +D  V+ +D+R G  M    G  
Sbjct: 133 CRSHSVEPVQIIDTFLD----TVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSDNLGQP 192

Query: 229 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 288
             +  + +S DG+ +L   +D  L + D          +++++GH     K    C  + 
Sbjct: 193 --VNCISISNDGNCVLAGCLDSTLRLLD----RTTGELLQVYKGHISKSFKT--DCCLTN 252

Query: 289 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQI 340
             + V  GS D +V+ WD    ++L K   H   V    +HP E  + + S D  I
Sbjct: 253 SDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTI 294

[Close]

BLAST of IVF0002706.1 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-28
Identity = 85/301 (28.24%), Postives = 144/301 (47.84%), Query Frame = 0


Query: 50  LSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDG 109
           ++GH  A+  + F+PDG  +ASGS D  + LW+++ +   F   +GHKN VL + W+ DG
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDG 164

Query: 110 SQIVSASPDKTLRAWDVETGK-QIKKMAEHSSFVN--SCCPTRRGPPL--IVSGSDDGTA 169
             +VS S    +  W+ + G+ +   +  H  ++   S  P     P    V+ S DG A
Sbjct: 165 KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDA 224

Query: 170 KLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 229
           ++WD+  ++  I        +T V +      I+TG  D  +K+W+  +G+++  L+GH 
Sbjct: 225 RIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKLIRELKGHG 284

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKIFEGHQHNFEKNLLKCSW 289
             I  + LS +  Y+L  G       +D   R Y P     K  E  ++N  K       
Sbjct: 285 HWINSLALSTE--YVLRTG------AFDHTGRQYPPNEEKQKALE--RYNKTK------- 344

Query: 290 SADGSKVTAGSSDRMVYIWD-TTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIY 342
                ++ +GS D  +++W+ + S++   +L GH   VN   F P    +AS S DK + 
Sbjct: 345 GDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVR 386

[Close]

BLAST of IVF0002706.1 vs. TAIR 10
Match: AT5G08560.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-26
Identity = 74/297 (24.92%), Postives = 148/297 (49.83%), Query Frame = 0


Query: 49  LLSGHQSAIYTLKFNPDGNVIASGSHDKEIFLWNVHGDCKNFM--VLRGHKNAVLDLHWT 108
           +L  H   ++ L+F+ +G  +AS S D+   +W +  D    +   L GH   V+ + W+
Sbjct: 269 ILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWS 328

Query: 109 VDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSC--CPTRRGPPLIVSGSDDGTA 168
            D  Q+++   ++ +R WDV++G  +    +      SC   P  +G   I++G  D + 
Sbjct: 329 PDDRQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPISCGWYPDGQG---IIAGMTDRSI 388

Query: 169 KLWDMRQRGAIQTFPDKYQ-ITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 228
            +WD+  R        + Q ++ ++ +D    + +   D+ + ++D R+  V   ++  +
Sbjct: 389 CMWDLDGREKECWKGQRTQKVSDIAMTDDGKWLVSVCKDSVISLFD-REATVERLIE-EE 448

Query: 229 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSA 288
           DMIT   LS D  Y+L N ++ ++ +W++       + V  ++GH+ +    +  C    
Sbjct: 449 DMITSFSLSNDNKYILVNLLNQEIRLWNIE---GDPKIVSRYKGHKRS-RFIIRSCFGGY 508

Query: 289 DGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSE-PIVASCSSDKQI 340
             + + +GS D  VYIW  ++ +++ +LPGH G+VN   + P+   ++AS S D  I
Sbjct: 509 KQAFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTI 556

The following BLAST results are available for this feature:

BLAST of IVF0002706.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96DI7	1.4e-123	60.84	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR...	[more]
Q6PE01	2.4e-123	60.19	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn...	[more]
Q2HJH6	3.2e-123	60.52	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP...	[more]
Q5RF51	1.3e-121	60.19	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR...	[more]
Q55AR8	1.2e-111	57.74	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX...	[more]

BLAST of IVF0002706.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYI1	3.3e-208	100.00	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BDK5	3.3e-208	100.00	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KTB1	1.4e-206	99.13	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]
A0A6J1HV60	1.2e-202	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1G1Q0	1.2e-202	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of IVF0002706.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446018.1	1.33e-264	100.00	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA...	[more]
XP_004135336.1	1.82e-262	99.13	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 ...	[more]
XP_038877892.1	4.11e-259	98.26	U5 small nuclear ribonucleoprotein 40 kDa protein [Benincasa hispida]	[more]
XP_022945717.1	2.78e-257	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG65735...	[more]
XP_022966914.1	2.78e-257	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima]	[more]

BLAST of IVF0002706.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43770.1	5.4e-187	87.83	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	9.0e-41	30.74	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G64730.1	4.2e-30	27.70	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52820.1	1.0e-28	28.24	WD-40 repeat family protein / notchless protein, putative	[more]
AT5G08560.1	1.3e-26	24.92	transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 155..169 score: 41.82 coord: 112..126 score: 37.9 coord: 69..83 score: 35.64
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 258..301 e-value: 1.3E-5 score: 34.7 coord: 304..343 e-value: 8.1E-5 score: 32.0 coord: 212..251 e-value: 1.6E-8 score: 44.3 coord: 128..168 e-value: 1.6E-7 score: 41.0 coord: 43..82 e-value: 2.4E-9 score: 47.1 coord: 86..125 e-value: 2.0E-7 score: 40.7 coord: 171..209 e-value: 3.2E-4 score: 30.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 307..341 e-value: 9.5E-4 score: 19.9 coord: 260..301 e-value: 1.4E-5 score: 25.7 coord: 130..168 e-value: 4.1E-4 score: 21.1 coord: 88..125 e-value: 4.2E-4 score: 21.1 coord: 214..251 e-value: 7.2E-6 score: 26.6 coord: 46..82 e-value: 2.1E-7 score: 31.5 coord: 184..209 e-value: 0.0089 score: 16.9
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 135..177 score: 10.541869
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 311..344 score: 9.773251
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 93..134 score: 16.022453
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 184..218 score: 12.580379
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 219..253 score: 13.516088
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 50..83 score: 16.189545
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 280..310 score: 10.040596
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 42..344 e-value: 2.9E-122 score: 409.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR44006	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 33..344
None	No IPR available	PANTHER	PTHR44006:SF1	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 33..344
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 311..344 score: 9.572873
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 219..253 score: 11.207411
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 177..214 score: 9.151057
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 50..83 score: 13.31649
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 93..130 score: 12.182859
None	No IPR available	CDD	cd00200	WD40	coord: 50..341 e-value: 1.1274E-74 score: 230.299
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 69..83
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 288..302
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 155..169
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 112..126
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 196..210
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 47..341

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0002706	IVF0002706	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002706.1-exon	IVF0002706.1-exon-chr10:4056038..4057072	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002706.1-cds	IVF0002706.1-cds-chr10:4056038..4057072	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0002706.1	IVF0002706.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005515	protein binding