IVF0025641 (gene) Melon (IVF77) v1

Overview


Name	IVF0025641
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Location	chr10: 14508062 .. 14508307 (+)
RNA-Seq Expression	IVF0025641
Synteny	IVF0025641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAAATTAGAGCACGTATGTATACTGCACAGAGTAGGCAGAAGAGTTATGCGGATATGAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCGCCTATGAGAGGTGTCTTACGATTTGAAAAGAGAGGAAAGCTGAGTCCCCGTTTTGTTAGGCCGTTTGAGATTCTGGAGCGGATTGGCCAGTAG

mRNA sequence

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAAATTAGAGCACGTATGTATACTGCACAGAGTAGGCAGAAGAGTTATGCGGATATGAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCGCCTATGAGAGGTGTCTTACGATTTGAAAAGAGAGGAAAGCTGAGTCCCCGTTTTGTTAGGCCGTTTGAGATTCTGGAGCGGATTGGCCAGTAG

Coding sequence (CDS)

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAAATTAGAGCACGTATGTATACTGCACAGAGTAGGCAGAAGAGTTATGCGGATATGAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCGCCTATGAGAGGTGTCTTACGATTTGAAAAGAGAGGAAAGCTGAGTCCCCGTTTTGTTAGGCCGTTTGAGATTCTGGAGCGGATTGGCCAGTAG

Protein sequence

MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFEKRGKLSPRFVRPFEILERIGQ

Homology

[Close]

BLAST of IVF0025641 vs. ExPASy TrEMBL
Match: A0A5D3DR46 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00420 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.6e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
           MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE
Sbjct: 768 MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 827

Query: 61  KRGKLSPRFVRPFEILERIGQ 82
           KRGKLSPRFVRPFEILERIGQ
Sbjct: 828 KRGKLSPRFVRPFEILERIGQ 848

[Close]

BLAST of IVF0025641 vs. ExPASy TrEMBL
Match: A0A5A7VIZ4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002620 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.6e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
           MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE
Sbjct: 768 MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 827

Query: 61  KRGKLSPRFVRPFEILERIGQ 82
           KRGKLSPRFVRPFEILERIGQ
Sbjct: 828 KRGKLSPRFVRPFEILERIGQ 848

[Close]

BLAST of IVF0025641 vs. ExPASy TrEMBL
Match: A0A5A7TF28 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9211G00010 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 75/80 (93.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
           MGPELVQSTNEAIQKIR+RM+TAQSRQKSYAD+RRKDLEF+VGDKVFLKVAPMRGVLRFE
Sbjct: 167 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFE 226

Query: 61  KRGKLSPRFVRPFEILERIG 81
           +RGKLSPRFVRPFEILERIG
Sbjct: 227 RRGKLSPRFVRPFEILERIG 246

[Close]

BLAST of IVF0025641 vs. ExPASy TrEMBL
Match: A0A5A7T131 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34701G00010 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.7e-33
Identity = 74/80 (92.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
           MGPELVQSTNEAIQKIR+RM+TAQSRQKSYAD+RRKDLEF++GDKVFLKVAPMRGVLRFE
Sbjct: 27  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMRGVLRFE 86

Query: 61  KRGKLSPRFVRPFEILERIG 81
           +RGKLSPRFVRPFEILERIG
Sbjct: 87  RRGKLSPRFVRPFEILERIG 106

[Close]

BLAST of IVF0025641 vs. ExPASy TrEMBL
Match: A0A5A7SNL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002490 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
            MGPELVQSTNEAIQKIR+RM+TAQSRQKSYAD+RRKDL+FDVGDKVFLKVAPMRGVLRFE
Sbjct: 970  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLKFDVGDKVFLKVAPMRGVLRFE 1029

Query: 61   KRGKLSPRFVRPFEILERIG 81
            KRGKLSPRFV PFEILERIG
Sbjct: 1030 KRGKLSPRFVGPFEILERIG 1049

[Close]

BLAST of IVF0025641 vs. NCBI nr
Match: KAA0051723.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 9.75e-43
Identity = 74/80 (92.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
          MGPELVQSTNEAIQKIR+RM+TAQSRQKSYAD+RRKDLEF+VGDKVFLKVAPMRGVLRFE
Sbjct: 1  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFE 60

Query: 61 KRGKLSPRFVRPFEILERIG 80
          +RGKLSPRFV PFEILERIG
Sbjct: 61 RRGKLSPRFVGPFEILERIG 80

[Close]

BLAST of IVF0025641 vs. NCBI nr
Match: KAA0036508.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.32e-42
Identity = 74/80 (92.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
           MGPELVQSTNEAIQKIR+RM+TAQSRQKSYAD+RRKDLEF++GDKVFLKVAPMRGVLRFE
Sbjct: 27  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMRGVLRFE 86

Query: 61  KRGKLSPRFVRPFEILERIG 80
           +RGKLSPRFVRPFEILERIG
Sbjct: 87  RRGKLSPRFVRPFEILERIG 106

[Close]

BLAST of IVF0025641 vs. NCBI nr
Match: KAA0038843.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 1.75e-42
Identity = 73/80 (91.25%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
          MGPELVQSTNEAIQKIR+RM+TA+SRQKSYAD+RRKDLEF++GDKVFLKVAPMRGVLRFE
Sbjct: 1  MGPELVQSTNEAIQKIRSRMHTAESRQKSYADVRRKDLEFEIGDKVFLKVAPMRGVLRFE 60

Query: 61 KRGKLSPRFVRPFEILERIG 80
          +RGKLSPRFVRPFEILERIG
Sbjct: 61 RRGKLSPRFVRPFEILERIG 80

[Close]

BLAST of IVF0025641 vs. NCBI nr
Match: TYK26028.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (396), Expect = 2.83e-42
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
           MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE
Sbjct: 768 MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 827

Query: 61  KRGKLSPRFVRPFEILERIGQ 81
           KRGKLSPRFVRPFEILERIGQ
Sbjct: 828 KRGKLSPRFVRPFEILERIGQ 848

[Close]

BLAST of IVF0025641 vs. NCBI nr
Match: KAA0067180.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (396), Expect = 2.93e-42
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 60
           MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE
Sbjct: 768 MGPELVQSTNEAIQKIRARMYTAQSRQKSYADMRRKDLEFDVGDKVFLKVAPMRGVLRFE 827

Query: 61  KRGKLSPRFVRPFEILERIGQ 81
           KRGKLSPRFVRPFEILERIGQ
Sbjct: 828 KRGKLSPRFVRPFEILERIGQ 848

The following BLAST results are available for this feature:

BLAST of IVF0025641 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DR46	4.6e-36	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00420 P...	[more]
A0A5A7VIZ4	4.6e-36	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002620 PE...	[more]
A0A5A7TF28	2.8e-33	93.75	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9211G00010 P...	[more]
A0A5A7T131	3.7e-33	92.50	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34701G00010 ...	[more]
A0A5A7SNL9	8.2e-33	93.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]

BLAST of IVF0025641 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051723.1	9.75e-43	92.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036508.1	1.32e-42	92.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0038843.1	1.75e-42	91.25	pol protein [Cucumis melo var. makuwa]	[more]
TYK26028.1	2.83e-42	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0067180.1	2.93e-42	100.00	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025641 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 16..81
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 16..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025641.1	IVF0025641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding