Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTCATTAAAGATTATGATTGCACTATCGCATACTACCCTAGGAAAGTCAATGTCATAGCTGACGCATTAAGTAGAAAAAGCCTCAGCCCAAGGAACAAAGGGAGGATGGCTCTATTAAAAAAGCTAAGAGGCTTCAAAGTGGTACTAAATGCAGGAACATTTGGAAACCCGATGGCACGTTTTCAGGTGAAGCCCACGCTTGAAGAGGAAATTGTTAGATTGCAACCTGAAGACCCTGAGCTGAGGAAGATAGCCGAAAAAAGAGAGATGTGA
mRNA sequence
ATGAAGCTCATTAAAGATTATGATTGCACTATCGCATACTACCCTAGGAAAGTCAATGTCATAGCTGACGCATTAAGTAGAAAAAGCCTCAGCCCAAGGAACAAAGGGAGGATGGCTCTATTAAAAAAGCTAAGAGGCTTCAAAGTGGTACTAAATGCAGGAACATTTGGAAACCCGATGGCACGTTTTCAGGTGAAGCCCACGCTTGAAGAGGAAATTGTTAGATTGCAACCTGAAGACCCTGAGCTGAGGAAGATAGCCGAAAAAAGAGAGATGTGA
Coding sequence (CDS)
ATGAAGCTCATTAAAGATTATGATTGCACTATCGCATACTACCCTAGGAAAGTCAATGTCATAGCTGACGCATTAAGTAGAAAAAGCCTCAGCCCAAGGAACAAAGGGAGGATGGCTCTATTAAAAAAGCTAAGAGGCTTCAAAGTGGTACTAAATGCAGGAACATTTGGAAACCCGATGGCACGTTTTCAGGTGAAGCCCACGCTTGAAGAGGAAATTGTTAGATTGCAACCTGAAGACCCTGAGCTGAGGAAGATAGCCGAAAAAAGAGAGATGTGA
Protein sequence
MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPMARFQVKPTLEEEIVRLQPEDPELRKIAEKREM
Homology
BLAST of IVF0020924 vs. ExPASy TrEMBL
Match:
A0A5A7VIK8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE=4 SV=1)
HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM
Sbjct: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 93
ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM
Sbjct: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 92
BLAST of IVF0020924 vs. ExPASy TrEMBL
Match:
A0A5D3DMM3 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001300 PE=4 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
M+LIKDYDCTI Y+ K NV ADALSRKS S NKG++ALL +LR K +LNA GN +
Sbjct: 40 MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEK 90
ARFQ K TLE+EI + QPEDP LRK+ E+
Sbjct: 100 ARFQDKTTLEDEIFKSQPEDPVLRKLTEE 128
BLAST of IVF0020924 vs. ExPASy TrEMBL
Match:
A0A5A7SZR3 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001060 PE=4 SV=1)
HSP 1 Score: 106.7 bits (265), Expect = 5.3e-20
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
MKLIKDY TIAY+ +K NV+AD SRKSL+ N+G +ALL++LRGFK +LNAG N M
Sbjct: 1 MKLIKDYGYTIAYHSKKANVVADTSSRKSLNTTNRGSLALLRELRGFKGILNAGKSKNLM 60
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEK 90
AR QVK T EEEIVR Q +DPE RK+AE+
Sbjct: 61 ARSQVKLTHEEEIVRSQLKDPEFRKMAEE 89
BLAST of IVF0020924 vs. ExPASy TrEMBL
Match:
A0A5A7SUU4 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
M+LIKD+DCTI Y+ K NV+AD LSRKS + GR+ALL++LR +K +++G+ G+ +
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEK 90
ARFQVKP +EEEIVR Q EDP LR++ E+
Sbjct: 75 ARFQVKPIIEEEIVRTQFEDPTLRRLIEE 103
BLAST of IVF0020924 vs. ExPASy TrEMBL
Match:
A0A5A7UWA6 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001920 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 2.9e-18
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
MKLIKDYDCTI Y+ K N+IADALS K SPRN+GRMALL++L+GFK +L A T GN M
Sbjct: 1 MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
Query: 61 ARFQVKPTL 70
ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69
BLAST of IVF0020924 vs. NCBI nr
Match:
KAA0067194.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 179 bits (455), Expect = 9.81e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM
Sbjct: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 92
ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM
Sbjct: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAEKREM 92
BLAST of IVF0020924 vs. NCBI nr
Match:
KAA0036590.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 105 bits (261), Expect = 9.85e-27
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
MKLIKDY TIAY+ +K NV+AD SRKSL+ N+G +ALL++LRGFK +LNAG N M
Sbjct: 1 MKLIKDYGYTIAYHSKKANVVADTSSRKSLNTTNRGSLALLRELRGFKGILNAGKSKNLM 60
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAE 88
AR QVK T EEEIVR Q +DPE RK+AE
Sbjct: 61 ARSQVKLTHEEEIVRSQLKDPEFRKMAE 88
BLAST of IVF0020924 vs. NCBI nr
Match:
KAA0059914.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [Cucumis melo var. makuwa])
HSP 1 Score: 105 bits (262), Expect = 2.52e-26
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
M+LIKDYDCTI Y+ K NV ADALSRKS S NKG++ALL +LR K +LNA GN +
Sbjct: 40 MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAE 88
ARFQ K TLE+EI + QPEDP LRK+ E
Sbjct: 100 ARFQDKTTLEDEIFKSQPEDPVLRKLTE 127
BLAST of IVF0020924 vs. NCBI nr
Match:
KAA0058456.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [Cucumis melo var. makuwa])
HSP 1 Score: 100 bits (249), Expect = 1.32e-25
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
MKLIKDYDCTI Y+ K N+IADALS K SPRN+GRMALL++L+GFK +L A T GN M
Sbjct: 1 MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60
Query: 61 ARFQVKPTL 69
ARFQVKPTL
Sbjct: 61 ARFQVKPTL 69
BLAST of IVF0020924 vs. NCBI nr
Match:
KAA0035002.1 (polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 100 bits (250), Expect = 1.49e-23
Identity = 50/88 (56.82%), Postives = 68/88 (77.27%), Query Frame = 0
Query: 1 MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60
M+LIKD+DCTI Y+ K NV+AD LSRKS + GR+ALL++LR +K +++G+ G+ +
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74
Query: 61 ARFQVKPTLEEEIVRLQPEDPELRKIAE 88
ARFQVKP +EEEIVR Q EDP LR++ E
Sbjct: 75 ARFQVKPIIEEEIVRTQFEDPTLRRLIE 102
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VIK8 | 1.7e-42 | 100.00 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE... | [more] |
| A0A5D3DMM3 | 4.1e-20 | 62.92 | CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G... | [more] |
| A0A5A7SZR3 | 5.3e-20 | 64.04 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001060 P... | [more] |
| A0A5A7SUU4 | 1.0e-18 | 56.18 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE... | [more] |
| A0A5A7UWA6 | 2.9e-18 | 72.46 | CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067194.1 | 9.81e-57 | 100.00 | polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0036590.1 | 9.85e-27 | 64.77 | polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0059914.1 | 2.52e-26 | 63.64 | CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [... | [more] |
| KAA0058456.1 | 1.32e-25 | 72.46 | CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [... | [more] |
| KAA0035002.1 | 1.49e-23 | 56.82 | polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
