Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCATCTCTCTCTCTCTCTTTAGAAAATTACTCACCACACCAACAAATTCAACTTTCTTCTTCTCCAATTGTCTCATTCATCCATTCAACTAATTTCTCCTCCTCCTCACTCTTTTTTATTTTCCAGCTCTCTTAAGCCAATAATTATTACAAACAAATCAATGTCGTCTTCTTCAATCTTGAGCTCCCAGTCCATGGCTATGGCTTTCGCCGCTCTCTCTGCAGGGACCGTCATCGTTGTCCTTTCTCTCTACCTTCATAAATCCCACCCCTCAATTTCTTCTGGTAAGCAATAATTCAATTAATTCCATTTTGCAACAAGAAATCAAATTTTATTTTTTTATTTTTTGGGTTTTTTTTTTCTTCAAGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAAAAAGGAAGAAAAAGAGTTCATTTTTCTGACGATTTAGCCATTTTTAGTAGTACTGAAGAATTGAAGAGAAAGAAAGACATGATATTGGGTTCATCGCCGTCTCCGGGAAGAGCTGCGGCACGGCGGTTGACGAGGAACGGTGGAGGAGGCGGCGGAATGCCGGCGAATAGAGCGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAATTATAGACTCAAC
mRNA sequence
ATTCCATCTCTCTCTCTCTCTTTAGAAAATTACTCACCACACCAACAAATTCAACTTTCTTCTTCTCCAATTGTCTCATTCATCCATTCAACTAATTTCTCCTCCTCCTCACTCTTTTTTATTTTCCAGCTCTCTTAAGCCAATAATTATTACAAACAAATCAATGTCGTCTTCTTCAATCTTGAGCTCCCAGTCCATGGCTATGGCTTTCGCCGCTCTCTCTGCAGGGACCGTCATCGTTGTCCTTTCTCTCTACCTTCATAAATCCCACCCCTCAATTTCTTCTGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAAAAAGGAAGAAAAAGAGTTCATTTTTCTGACGATTTAGCCATTTTTAGTAGTACTGAAGAATTGAAGAGAAAGAAAGACATGATATTGGGTTCATCGCCGTCTCCGGGAAGAGCTGCGGCACGGCGGTTGACGAGGAACGGTGGAGGAGGCGGCGGAATGCCGGCGAATAGAGCGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAATTATAGACTCAAC
Coding sequence (CDS)
ATGTCGTCTTCTTCAATCTTGAGCTCCCAGTCCATGGCTATGGCTTTCGCCGCTCTCTCTGCAGGGACCGTCATCGTTGTCCTTTCTCTCTACCTTCATAAATCCCACCCCTCAATTTCTTCTGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAAAAAGGAAGAAAAAGAGTTCATTTTTCTGACGATTTAGCCATTTTTAGTAGTACTGAAGAATTGAAGAGAAAGAAAGACATGATATTGGGTTCATCGCCGTCTCCGGGAAGAGCTGCGGCACGGCGGTTGACGAGGAACGGTGGAGGAGGCGGCGGAATGCCGGCGAATAGAGCGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAA
Protein sequence
MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHFSDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIAYSL
Homology
BLAST of IVF0025680.1 vs. ExPASy TrEMBL
Match:
A0A1S3C5Q6 (uncharacterized protein LOC103497202 OS=Cucumis melo OX=3656 GN=LOC103497202 PE=4 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHF 60
MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVV+KKEMEKKKKGRKRVHF
Sbjct: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVEKKEMEKKKKGRKRVHF 60
Query: 61 SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 120
SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR
Sbjct: 61 SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 120
Query: 121 LVHRIAYSL 130
LVHRIAYSL
Sbjct: 121 LVHRIAYSL 129
BLAST of IVF0025680.1 vs. ExPASy TrEMBL
Match:
A0A0A0LIY8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006280 PE=4 SV=1)
HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 108/127 (85.04%), Postives = 116/127 (91.34%), Query Frame = 0
Query: 3 SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHFSD 62
SSSILSSQSMAMAF AGTVIVVLS YLHKSHPSISSV+KKKE EKKKKGRK+VHFSD
Sbjct: 2 SSSILSSQSMAMAF----AGTVIVVLSFYLHKSHPSISSVMKKKEKEKKKKGRKKVHFSD 61
Query: 63 DLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLV 122
DLAIFSST++LKRKKDM+LGSSP GRA AR LT +GGGGGG+PANRAALYNGILR+RLV
Sbjct: 62 DLAIFSSTKDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNRLV 121
Query: 123 HRIAYSL 130
HRIAYSL
Sbjct: 122 HRIAYSL 124
BLAST of IVF0025680.1 vs. ExPASy TrEMBL
Match:
A0A5A7V7G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00290 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 106/129 (82.17%), Postives = 106/129 (82.17%), Query Frame = 0
Query: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHF 60
MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISS
Sbjct: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISS------------------- 60
Query: 61 SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 120
AIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR
Sbjct: 61 ----AIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 106
Query: 121 LVHRIAYSL 130
LVHRIAYSL
Sbjct: 121 LVHRIAYSL 106
BLAST of IVF0025680.1 vs. ExPASy TrEMBL
Match:
A0A6J1G4X1 (uncharacterized protein LOC111450851 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450851 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 81/118 (68.64%), Postives = 88/118 (74.58%), Query Frame = 0
Query: 12 MAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHFSDDLAIFSSTE 71
MAMA AALS G V VVLS KS S+SSVVK KKKKGRKRVHF+DD A+ STE
Sbjct: 1 MAMAMAALS-GAVAVVLSFRHRKSAASVSSVVK-----KKKKGRKRVHFADDSAV-CSTE 60
Query: 72 ELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIAYSL 130
EL+RK +ILG SP GRA LT +GGGG GMPANR ALYNGILRDRLVHR+AYSL
Sbjct: 61 ELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111
BLAST of IVF0025680.1 vs. ExPASy TrEMBL
Match:
A0A6J1G5C3 (uncharacterized protein LOC111450851 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450851 PE=4 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 79/121 (65.29%), Postives = 89/121 (73.55%), Query Frame = 0
Query: 12 MAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKE---MEKKKKGRKRVHFSDDLAIFS 71
MAMA AALS G V VVLS KS S+SS +K ++KKKKGRKRVHF+DD A+
Sbjct: 1 MAMAMAALS-GAVAVVLSFRHRKSAASVSSGKQKPPIFLVKKKKKGRKRVHFADDSAV-C 60
Query: 72 STEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIAYS 130
STEEL+RK +ILG SP GRA LT +GGGG GMPANR ALYNGILRDRLVHR+AYS
Sbjct: 61 STEELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYS 119
BLAST of IVF0025680.1 vs. NCBI nr
Match:
XP_008457539.1 (PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo])
HSP 1 Score: 229 bits (585), Expect = 2.18e-75
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHF 60
MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVV+KKEMEKKKKGRKRVHF
Sbjct: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVEKKEMEKKKKGRKRVHF 60
Query: 61 SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 120
SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR
Sbjct: 61 SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 120
Query: 121 LVHRIAYSL 129
LVHRIAYSL
Sbjct: 121 LVHRIAYSL 129
BLAST of IVF0025680.1 vs. NCBI nr
Match:
KGN60682.1 (hypothetical protein Csa_019276 [Cucumis sativus])
HSP 1 Score: 191 bits (485), Expect = 3.25e-60
Identity = 108/127 (85.04%), Postives = 116/127 (91.34%), Query Frame = 0
Query: 3 SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHFSD 62
SSSILSSQSMAMAFA GTVIVVLS YLHKSHPSISSV+KKKE EKKKKGRK+VHFSD
Sbjct: 2 SSSILSSQSMAMAFA----GTVIVVLSFYLHKSHPSISSVMKKKEKEKKKKGRKKVHFSD 61
Query: 63 DLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLV 122
DLAIFSST++LKRKKDM+LGSSP GRA AR LT +GGGGGG+PANRAALYNGILR+RLV
Sbjct: 62 DLAIFSSTKDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNRLV 121
Query: 123 HRIAYSL 129
HRIAYSL
Sbjct: 122 HRIAYSL 124
BLAST of IVF0025680.1 vs. NCBI nr
Match:
XP_038890799.1 (uncharacterized protein LOC120080255 [Benincasa hispida])
HSP 1 Score: 185 bits (469), Expect = 9.51e-58
Identity = 109/127 (85.83%), Postives = 113/127 (88.98%), Query Frame = 0
Query: 3 SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHFSD 62
SSSILSSQSMAMAFAALS GTVIV+LS LHKS PSISSVVKKKEMEKKKKGRKRVHF+D
Sbjct: 2 SSSILSSQSMAMAFAALS-GTVIVILSFCLHKSDPSISSVVKKKEMEKKKKGRKRVHFAD 61
Query: 63 DLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLV 122
DLAIF TEEL+ KK +ILGSSP PGR ARRLT GGGGGGMPANR ALYNGILRDRLV
Sbjct: 62 DLAIFG-TEELQIKKGLILGSSPPPGRGPARRLTSTGGGGGGMPANRVALYNGILRDRLV 121
Query: 123 HRIAYSL 129
HRIAYSL
Sbjct: 122 HRIAYSL 126
BLAST of IVF0025680.1 vs. NCBI nr
Match:
KAA0061609.1 (uncharacterized protein E6C27_scaffold41G001740 [Cucumis melo var. makuwa] >TYJ97819.1 uncharacterized protein E5676_scaffold285G00290 [Cucumis melo var. makuwa])
HSP 1 Score: 177 bits (448), Expect = 7.98e-55
Identity = 106/129 (82.17%), Postives = 106/129 (82.17%), Query Frame = 0
Query: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHF 60
MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISS
Sbjct: 1 MSSSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISS------------------- 60
Query: 61 SDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 120
AIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR
Sbjct: 61 ----AIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDR 106
Query: 121 LVHRIAYSL 129
LVHRIAYSL
Sbjct: 121 LVHRIAYSL 106
BLAST of IVF0025680.1 vs. NCBI nr
Match:
XP_022946911.1 (uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata])
HSP 1 Score: 127 bits (318), Expect = 5.75e-35
Identity = 81/118 (68.64%), Postives = 88/118 (74.58%), Query Frame = 0
Query: 12 MAMAFAALSAGTVIVVLSLYLHKSHPSISSVVKKKEMEKKKKGRKRVHFSDDLAIFSSTE 71
MAMA AALS G V VVLS KS S+SSVVKKK KKGRKRVHF+DD A+ STE
Sbjct: 1 MAMAMAALS-GAVAVVLSFRHRKSAASVSSVVKKK-----KKGRKRVHFADDSAV-CSTE 60
Query: 72 ELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIAYSL 129
EL+RK +ILG SP GRA LT +GGGG GMPANR ALYNGILRDRLVHR+AYSL
Sbjct: 61 ELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111
BLAST of IVF0025680.1 vs. TAIR 10
Match:
AT3G15760.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 42/138 (30.43%), Postives = 69/138 (50.00%), Query Frame = 0
Query: 8 SSQSMAMAFAALSAGTVI-VVLSLYLHKSH-----------PSISSVVKKKEMEKKKKGR 67
S+ ++ +A A + + T + + ++ H +H P + S + +E +K+ K
Sbjct: 5 SNGTVVIATAMVCSSTALFLAMARQFHGNHQNPKVLDQTLRPILRSCLSSEETKKQGKKI 64
Query: 68 KRVHFSDDLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGG-----GGMPANRA 127
K+V F+D++ E R++++ S P P +T+ G G MPANR
Sbjct: 65 KKVRFADNVKDTKGNGEEYRRRELNRKSVPKP-------VTKPGKTGSMCRISTMPANRM 124
Query: 128 ALYNGILRDRLVHRIAYS 129
ALYNGILRDR HR+ YS
Sbjct: 125 ALYNGILRDR-DHRVQYS 134
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3C5Q6 | 1.5e-57 | 99.22 | uncharacterized protein LOC103497202 OS=Cucumis melo OX=3656 GN=LOC103497202 PE=... | [more] |
A0A0A0LIY8 | 1.0e-45 | 85.04 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006280 PE=4 SV=1 | [more] |
A0A5A7V7G5 | 2.0e-41 | 82.17 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1G4X1 | 2.4e-26 | 68.64 | uncharacterized protein LOC111450851 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1G5C3 | 5.9e-25 | 65.29 | uncharacterized protein LOC111450851 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
Match Name | E-value | Identity | Description | |
XP_008457539.1 | 2.18e-75 | 99.22 | PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo] | [more] |
KGN60682.1 | 3.25e-60 | 85.04 | hypothetical protein Csa_019276 [Cucumis sativus] | [more] |
XP_038890799.1 | 9.51e-58 | 85.83 | uncharacterized protein LOC120080255 [Benincasa hispida] | [more] |
KAA0061609.1 | 7.98e-55 | 82.17 | uncharacterized protein E6C27_scaffold41G001740 [Cucumis melo var. makuwa] >TYJ9... | [more] |
XP_022946911.1 | 5.75e-35 | 68.64 | uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
AT3G15760.1 | 1.9e-04 | 30.43 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
IVF0025680 | IVF0025680 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0025680.1-exon | IVF0025680.1-exon-chr05:25526785..25527063 | exon |
IVF0025680.1-exon | IVF0025680.1-exon-chr05:25527148..25527434 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0025680.1-three_prime_utr | IVF0025680.1-three_prime_utr-chr05:25526785..25526797 | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0025680.1-cds | IVF0025680.1-cds-chr05:25526798..25527063 | CDS |
IVF0025680.1-cds | IVF0025680.1-cds-chr05:25527148..25527271 | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
IVF0025680.1-five_prime_utr | IVF0025680.1-five_prime_utr-chr05:25527272..25527434 | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
IVF0025680.1 | IVF0025680.1-protein | polypeptide |