Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGGTTTACGAGATTGAGGAGTAGTTTGGTTTGAAGGTATCGTTTTTGATGTCGTTGTCGAGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA
mRNA sequence
ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA
Coding sequence (CDS)
ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA
Protein sequence
MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Homology
BLAST of IVF0019988 vs. ExPASy TrEMBL
Match:
A0A5D3BCS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00490 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 7.0e-41
Identity = 90/110 (81.82%), Postives = 90/110 (81.82%), Query Frame = 0
Query: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY---- 60
MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY
Sbjct: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60
Query: 61 ----------------RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 91
RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61 LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110
BLAST of IVF0019988 vs. ExPASy TrEMBL
Match:
A0A0A0LJ29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 79/110 (71.82%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY---- 60
M LLEIAGIGGRRWECHYEKLN SGGSN V++MRRRRW+KKMLKRGMKGFRLY
Sbjct: 1 MSLLEIAGIGGRRWECHYEKLN-SGGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60
Query: 61 ----------------RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 91
RRIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61 LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106
BLAST of IVF0019988 vs. ExPASy TrEMBL
Match:
A0A7J7H3I9 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 0
Query: 11 GRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR---------- 70
G RW Y++L SN+R V + RRRW+ +M + +KGFRL + R
Sbjct: 8 GGRWTTRYKRLT----SNDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKRLNWKAFSIVM 67
Query: 71 ----------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
E+VNRMK +++CP IIFS QWGLPVLS+
Sbjct: 68 LPRRMAQIYAEVVNRMK-TDEICPAIIFSGQWGLPVLSH 100
BLAST of IVF0019988 vs. ExPASy TrEMBL
Match:
A0A6A4KLK9 (SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_21367 PE=3 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0
Query: 4 LEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR------ 63
+EI+ + G RW YEKL +G + + RRRW KM R +G RL R
Sbjct: 128 IEISDVVGGRWRIRYEKL--TGIDHEKAAA--RPRRRWAMKMNGR-FRGIRLPRCRKLNW 187
Query: 64 ----------RIR----EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
RI EI+NRMK ++D+CP I+FS WGLPVLS+
Sbjct: 188 RAFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228
BLAST of IVF0019988 vs. ExPASy TrEMBL
Match:
A0A061F3B0 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 0
Query: 9 IGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR-------- 68
+GG C YEKL + G + RRRW+KKM G+KG RL R +
Sbjct: 10 LGGHPVPCRYEKLRNVGDAR--------PRRRWVKKM-SGGLKGLRLSRSRKLKTLCSVV 69
Query: 69 ----------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
+I +R+K +CPNIIF+T WGLP LS+
Sbjct: 70 FANRITRIYADIAHRLKMDGTLCPNIIFATHWGLPTLSH 99
BLAST of IVF0019988 vs. NCBI nr
Match:
KAA0056096.1 (hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ96421.1 hypothetical protein E5676_scaffold546G00490 [Cucumis melo var. makuwa])
HSP 1 Score: 174 bits (441), Expect = 2.17e-54
Identity = 90/110 (81.82%), Postives = 90/110 (81.82%), Query Frame = 0
Query: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR
Sbjct: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60
Query: 61 -----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 90
RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61 LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110
BLAST of IVF0019988 vs. NCBI nr
Match:
KGN61039.1 (hypothetical protein Csa_021124 [Cucumis sativus])
HSP 1 Score: 147 bits (372), Expect = 6.36e-44
Identity = 79/110 (71.82%), Postives = 83/110 (75.45%), Query Frame = 0
Query: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
M LLEIAGIGGRRWECHYEKLNS GGSN V++MRRRRW+KKMLKRGMKGFRLYR
Sbjct: 1 MSLLEIAGIGGRRWECHYEKLNS-GGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60
Query: 61 -----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 90
RIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61 LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106
BLAST of IVF0019988 vs. NCBI nr
Match:
KAG6599155.1 (Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 102 bits (255), Expect = 3.93e-23
Identity = 61/108 (56.48%), Postives = 66/108 (61.11%), Query Frame = 0
Query: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
MGLLE AGIGGRRW YEKL+ ++ RRRW+KK LKRG KGFRLYR
Sbjct: 452 MGLLETAGIGGRRWN-QYEKLHCEDND------VVKCRRRWMKKTLKRGKKGFRLYRLTR 511
Query: 61 ----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
RIREIVNRMK VEDVC N+IF TQWGLP LSY
Sbjct: 512 SRSFCLKVSFLVLMSRRIREIVNRMK-VEDVCANVIFFTQWGLPTLSY 551
BLAST of IVF0019988 vs. NCBI nr
Match:
KAF5946811.1 (hypothetical protein HYC85_017039 [Camellia sinensis])
HSP 1 Score: 61.2 bits (147), Expect = 1.14e-09
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 0
Query: 1 MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR 60
MG ++ +GGR W Y++L S N+R V + RRRW+ +M + +KGFRL + R
Sbjct: 1 MGFEDV--VGGR-WTTRYKRLTS----NDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKR 60
Query: 61 --------------------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
E+VNRMK +++CP IIFS QWGLPVLS+
Sbjct: 61 LNWKAFSIVMLPRRMAQIYAEVVNRMK-TDEICPAIIFSGQWGLPVLSH 100
BLAST of IVF0019988 vs. NCBI nr
Match:
KAE9446725.1 (hypothetical protein C3L33_21367, partial [Rhododendron williamsianum])
HSP 1 Score: 61.2 bits (147), Expect = 8.67e-09
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0
Query: 4 LEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR------ 63
+EI+ + G RW YEKL +G + + RRRW KM R +G RL R
Sbjct: 128 IEISDVVGGRWRIRYEKL--TGIDHEKAAA--RPRRRWAMKMNGR-FRGIRLPRCRKLNW 187
Query: 64 ----------RIRE----IVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
RI E I+NRMK ++D+CP I+FS WGLPVLS+
Sbjct: 188 RAFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BCS3 | 7.0e-41 | 81.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LJ29 | 1.2e-32 | 71.82 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1 | [more] |
A0A7J7H3I9 | 1.1e-06 | 40.40 | Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1 | [more] |
A0A6A4KLK9 | 1.1e-06 | 39.62 | SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=26292... | [more] |
A0A061F3B0 | 7.3e-06 | 37.37 | Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAA0056096.1 | 2.17e-54 | 81.82 | hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ9642... | [more] |
KGN61039.1 | 6.36e-44 | 71.82 | hypothetical protein Csa_021124 [Cucumis sativus] | [more] |
KAG6599155.1 | 3.93e-23 | 56.48 | Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KAF5946811.1 | 1.14e-09 | 39.45 | hypothetical protein HYC85_017039 [Camellia sinensis] | [more] |
KAE9446725.1 | 8.67e-09 | 39.62 | hypothetical protein C3L33_21367, partial [Rhododendron williamsianum] | [more] |
Match Name | E-value | Identity | Description | |