Pay0006662 (gene) Melon (Payzawat) v1

Overview


Name	Pay0006662
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Unknown protein
Location	chr05: 3253046 .. 3254692 (-)
RNA-Seq Expression	Pay0006662
Synteny	Pay0006662

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTCTCGTGGACAGTCATAATATACAAGTAAACATGCCTCCACCATCCATTATTTCGCTGTTTTAGTTGATCTTAATTATGCAATTAATATTTTAAAACTTGTTTTCTTATCAATCTTTTAATTTAATTTGCTAAAAAAGATCCGATAAGTACGTTCATTAAAATGCACTATACAAACTTAAAAAGATTCAGTATTATTGGTTAAAACATCATGGGAAAAGTGGAAACCAATTATATTTATTAAGGATATTTTTGTAAAAATGAGTTGATTTCTATTTTACCTTTTGATTATAGATTGTTCTCCTAATGTTTGAAAAGTTCCGTGTTGTGTTAATTTTGTTCAACATTTTAACAGAAATGGATACAAAATCTCTTTCACATATAAAAACCAATCAAAAGATTGGGTAAATGTTTCCAGCAGGAGTTTGACTCATTTAACATGAAATTATACTAAATGACAGAAACCGGAACTTCCTTAATTTGAATACTAAAGCCCAACTTTGGTAATGATTTTCTTATAATTTCATAAACCAAATGATTACTAAACAGACTTAAATCAATCAAATTAACAGAGTATCTAAATTATTAATTGTTTTTATTCTTATGGATAGGTTCAGCAGGTAAATTATGGATAAACTTGATGATGATGTTATACAAGAGAGAGGGAGATTACAAGATTAAGGATACTTTATTCTGCCTTGTTGACTTCTGCCCCGCTCTCTATTTAAAGGTTCTGTGTTGAATAATTAAATACTATTTAACCAAATTTTGCATATTATTTGAGTGAAAAAACTTGTTTGTGAAGTTTGAAATTGGAGAGTCAATAGAAGTTTTGATGTCCTAATTAGTTTTGGTCAGTTTCAATTGTTTAATGTCTTATTCTATGCATTTGTAAATTTTTGTCTTGAGTGGGCAGCTGAAAATGACATATTTGTCCCTCCGTACCCAAAGGAAAACAGGAGCAGCAGCAGTAAAACCAAGGCAGAACCGTACAAGTGTTCTACGAATGCTGTCGAATGTGACAATTCAAACCTCTACCTTGGTCTTGCTCTTGCTCAGGTGAATGCTCTTATATTCACTCAACTGTTTTCTTTTAACAACGTACAAATGTTCTTTCATTATTCATTGAGACTATAATCAGTTTTAAGAATAATAATTAGTTATTAATACTTTAAACTAGCTCATGAATTTTCTCAAAAGTAAATAACATTGGAGAGGAATTGTTCTGGATAGTAAAAAATGTAAGTATTTATGAAACATACCAAAAAAACTAAACTTAAAAGGTCCTTGGAGAGGGACGGATTTTGCTATTTTTTAAAATATCCCATAACATTATGTTCTATTTTTCTAAAAATTTATTGAAAAATATGCTGCATTTTTCTTTGGAAAAGTTATTAAAATAATACATGGCATTTGTGACTAATTTATTTATCTTAGTTGTGTCTGACTGAGTAATGTTTTAAATTAAACAAATAGCTATTTGAACTGTATTAGGCTAGTGTTTTTTATTTTAAAAATAAAAACTTACAGATTTTTTGAATTCTTTTAAACGGTTAAAATCAATTTATCACTTTTTAAATTTCTGAAAATGTTTTTTTAATCACTCAGGGTATGATATCTAATGTTGGAATTTTGAGTTAA

mRNA sequence

ATGCAGGTTCTCGTGGACAGTCATAATATACAAGTTCAGCAGTGGGCAGCTGAAAATGACATATTTGTCCCTCCGTACCCAAAGGAAAACAGGAGCAGCAGCAGTAAAACCAAGGCAGAACCGTACAAGTGTTCTACGAATGCTGTCGAATGTGACAATTCAAACCTCTACCTTGGTCTTGCTCTTGCTCAGGGTATGATATCTAATGTTGGAATTTTGAGTTAA

Coding sequence (CDS)

ATGCAGGTTCTCGTGGACAGTCATAATATACAAGTTCAGCAGTGGGCAGCTGAAAATGACATATTTGTCCCTCCGTACCCAAAGGAAAACAGGAGCAGCAGCAGTAAAACCAAGGCAGAACCGTACAAGTGTTCTACGAATGCTGTCGAATGTGACAATTCAAACCTCTACCTTGGTCTTGCTCTTGCTCAGGGTATGATATCTAATGTTGGAATTTTGAGTTAA

Protein sequence

MQVLVDSHNIQVQQWAAENDIFVPPYPKENRSSSSKTKAEPYKCSTNAVECDNSNLYLGLALAQGMISNVGILS

Homology

[Close]

BLAST of Pay0006662 vs. ExPASy TrEMBL
Match: A0A0A0LKS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000980 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1  MQVLVDSHNIQVQQWAAENDIFVPPYPKENRSSSSKTKAEPYKCSTNAVECDNSNL 57
          MQVLVDSHNIQVQQ    N        ++  +++ K +AEP KCSTNAVECDN+NL
Sbjct: 1  MQVLVDSHNIQVQQLKVTN--LSLRTQRKTGAAAVKPRAEPNKCSTNAVECDNANL 54

[Close]

BLAST of Pay0006662 vs. NCBI nr
Match: KGN60591.1 (hypothetical protein Csa_019432 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1  MQVLVDSHNIQVQQWAAENDIFVPPYPKENRSSSSKTKAEPYKCSTNAVECDNSNL 57
          MQVLVDSHNIQVQQ    N        ++  +++ K +AEP KCSTNAVECDN+NL
Sbjct: 1  MQVLVDSHNIQVQQLKVTN--LSLRTQRKTGAAAVKPRAEPNKCSTNAVECDNANL 54

The following BLAST results are available for this feature:

BLAST of Pay0006662 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0006662 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKS2	1.7e-05	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000980 PE=4 SV=1	[more]

BLAST of Pay0006662 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60591.1	3.6e-05	57.14	hypothetical protein Csa_019432 [Cucumis sativus]	[more]

BLAST of Pay0006662 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0006662.1	Pay0006662.1	mRNA