Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAACAAAATTGTAAGTTCCAATATTTCTAGCAGTCACTTGAATTATTTGGCGTACAACTTTAGTTATAAATGATGCAACTATGATCCTATATAATTCAACAGTAGAAAGTTGGATGAAGAGGATAATTATTATTCATCCGTTATTTGTTTTTCCAGCTATAGTGTCCAGTTCTTGCTTTGCCTAAGTTTTCTTCCTTACCTCACTTTTTAGTTTCATCTCTGTATTTGGGGTTTTATTTTAGTTTCTGTTGTGATCTTTTGTTATTTCATTTATATATGAAATGGTTTTTTTTATAAAAAAGAAAAAAAATGTAATTTCTTATTTTTATGTCTGTCTTCACTTCTTCAGTGCCTGTAGATGATTATGTATGTGACTACTATACTGTGAAGAATGATATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGTGCGTCTTTCTCCCTTTTTCTGGTTTCCCTTTCTGCTATGGTTTACACTTTATGTTTTTTTTAATCATTTCATATATTTTTTTTTCAGGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGGTAAAAACCAAAAACCTTTTCCTTCTAGTTTAAAAATCTAAATTATATCTGATTTCTTTTATGATTGTCTTTTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAGGATGAGTTATCGGAGGAGGAAAAAGTTGAATTATATGAGGATGACATAAATGATGATTTTGATGAAGATGATGGTGGTGATAGCTTTGATTATGATAGTAATGGTGGTCATGATGAAGGTGAAGATAGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTAGGGAATATATATCTTTTTTAATTAGGGTTTTTAGCGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAG
mRNA sequence
ATGATGAAACAAAATTTGCCTGTAGATGATTATGTATGTGACTACTATACTGTGAAGAATGATATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCTCAGAAACGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAG
Coding sequence (CDS)
ATGATGAAACAAAATTTGCCTGTAGATGATTATGTATGTGACTACTATACTGTGAAGAATGATATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCTCAGAAACGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAG
Protein sequence
MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMMRSSPQKRFAYYGRNACYD
Homology
BLAST of Pay0017620 vs. ExPASy Swiss-Prot
Match:
Q8GYP3 (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query: 4 QNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENN 63
Q+ ++YV DYY V +M+I+ED + FPL V++ + D +SDY+++DSNAE++
Sbjct: 213 QSSHTEEYVYDYYAVNEEMDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDH 272
Query: 64 PCFDYPDEEELESESSNE 80
P DYP+EEE E E ++
Sbjct: 273 PKTDYPEEEEEEEEEDDD 290
BLAST of Pay0017620 vs. ExPASy TrEMBL
Match:
A0A1S3CIA5 (RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501292 PE=3 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 5.5e-39
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN
Sbjct: 1 MMKQNLPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELESESSNEMMRSSP ++
Sbjct: 61 NPCFDYPDEEELESESSNEMMRSSPLRK 88
BLAST of Pay0017620 vs. ExPASy TrEMBL
Match:
A0A5A7T861 (RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00080 PE=3 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 8.8e-37
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0
Query: 5 NLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 64
++PVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF
Sbjct: 7 SVPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 66
Query: 65 DYPDEEELESESSNEMMRSSPQKRFAY 92
DYPDEEELESESSNEMMRSSP + F Y
Sbjct: 67 DYPDEEELESESSNEMMRSSPLRNFDY 93
BLAST of Pay0017620 vs. ExPASy TrEMBL
Match:
A0A0A0K5Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1)
HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDDYV DYYTVKND+EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 220 MMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 279
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELES SSN+ + S ++
Sbjct: 280 NPCFDYPDEEELESTSSNDELEDSDDEK 307
BLAST of Pay0017620 vs. ExPASy TrEMBL
Match:
A0A1S4DWJ0 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 220 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 279
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELES+SSN+ + S ++
Sbjct: 280 NPCFDYPDEEELESKSSNDELEDSDDEK 307
BLAST of Pay0017620 vs. ExPASy TrEMBL
Match:
A0A5D3BU38 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00230 PE=4 SV=1)
HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 279 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 338
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELES+SSN+ + S ++
Sbjct: 339 NPCFDYPDEEELESKSSNDELEDSDDEK 366
BLAST of Pay0017620 vs. NCBI nr
Match:
XP_008463057.1 (PREDICTED: RNA-directed DNA methylation 4 isoform X2 [Cucumis melo])
HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN
Sbjct: 1 MMKQNLPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELESESSNEMMRSSP ++
Sbjct: 61 NPCFDYPDEEELESESSNEMMRSSPLRK 88
BLAST of Pay0017620 vs. NCBI nr
Match:
KAA0039163.1 (RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa] >TYK26949.1 RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0
Query: 5 NLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 64
++PVDD VCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF
Sbjct: 7 SVPVDDCVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCF 66
Query: 65 DYPDEEELESESSNEMMRSSPQKRFAY 92
DYPDEEELESESSNEMMRSSP + F Y
Sbjct: 67 DYPDEEELESESSNEMMRSSPLRNFDY 93
BLAST of Pay0017620 vs. NCBI nr
Match:
XP_004139832.1 (RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protein Csa_016181 [Cucumis sativus])
HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDDYV DYYTVKND+EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 220 MMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 279
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELES SSN+ + S ++
Sbjct: 280 NPCFDYPDEEELESTSSNDELEDSDDEK 307
BLAST of Pay0017620 vs. NCBI nr
Match:
XP_008447118.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo])
HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 218 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 277
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELES+SSN+ + S ++
Sbjct: 278 NPCFDYPDEEELESKSSNDELEDSDDEK 305
BLAST of Pay0017620 vs. NCBI nr
Match:
KAA0051104.1 (RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02694.1 RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0
Query: 1 MMKQNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAEN 60
MMKQNLPVDDYV DYYTVK D+EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAEN
Sbjct: 279 MMKQNLPVDDYVYDYYTVKTDVEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAEN 338
Query: 61 NPCFDYPDEEELESESSNEMMRSSPQKR 89
NPCFDYPDEEELES+SSN+ + S ++
Sbjct: 339 NPCFDYPDEEELESKSSNDELEDSDDEK 366
BLAST of Pay0017620 vs. TAIR 10
Match:
AT2G30280.1 (RNA-directed DNA methylation 4 )
HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0
Query: 4 QNLPVDDYVCDYYTVKNDMEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENN 63
Q+ ++YV DYY V +M+I+ED + FPL V++ + D +SDY+++DSNAE++
Sbjct: 213 QSSHTEEYVYDYYAVNEEMDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDH 272
Query: 64 PCFDYPDEEELESESSNE 80
P DYP+EEE E E ++
Sbjct: 273 PKTDYPEEEEEEEEEDDD 290
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8GYP3 | 1.7e-08 | 42.31 | RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A1S3CIA5 | 5.5e-39 | 95.45 | RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350129... | [more] |
A0A5A7T861 | 8.8e-37 | 91.95 | RNA-directed DNA methylation 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695... | [more] |
A0A0A0K5Q3 | 1.4e-31 | 81.82 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1 | [more] |
A0A1S4DWJ0 | 1.6e-30 | 79.55 | RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103... | [more] |
A0A5D3BU38 | 1.6e-30 | 79.55 | RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=11... | [more] |
Match Name | E-value | Identity | Description | |
XP_008463057.1 | 1.1e-38 | 95.45 | PREDICTED: RNA-directed DNA methylation 4 isoform X2 [Cucumis melo] | [more] |
KAA0039163.1 | 1.8e-36 | 91.95 | RNA-directed DNA methylation 4 isoform X2 [Cucumis melo var. makuwa] >TYK26949.1... | [more] |
XP_004139832.1 | 3.0e-31 | 81.82 | RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protei... | [more] |
XP_008447118.1 | 3.3e-30 | 79.55 | PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo] | [more] |
KAA0051104.1 | 3.3e-30 | 79.55 | RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02... | [more] |
Match Name | E-value | Identity | Description | |
AT2G30280.1 | 1.2e-09 | 42.31 | RNA-directed DNA methylation 4 | [more] |