Pay0021846 (gene) Melon (Payzawat) v1

Overview


Name	Pay0021846
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Location	chr01: 17357586 .. 17358131 (+)
RNA-Seq Expression	Pay0021846
Synteny	Pay0021846

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTATTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAAGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

mRNA sequence

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTATTCTTAAAGGTAGCACCTATGAAAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

Coding sequence (CDS)

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTATTCTTAAAGGTAGCACCTATGAAAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGACAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGAGCTATGTTGAACAACCTGTTGAGGTGCTTGCTAGAGAGGTGAAGACGTTGAGAAATAAACAAATTCCCCTAGTTAAAGTCTTATGGCGGAATCACCGGGTAGAAGAGGCTACATGGGAGCGTGAAGACGACATGAGATCCCGTTATCCCGAACTGTTCGAGGAATAA

Protein sequence

MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

Homology

[Close]

BLAST of Pay0021846 vs. ExPASy TrEMBL
Match: A0A5A7VIQ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.0e-77
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL
Sbjct: 210 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 269

Query: 61  PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
           PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+I
Sbjct: 270 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEI 329

Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFE 153
            LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 330 SLVKVLWRNHRVEEATWEREDDMRSRYPELFE 361

[Close]

BLAST of Pay0021846 vs. ExPASy TrEMBL
Match: A0A5D3CF08 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00070 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.7e-76
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
           M PELVQSTNEAIQKIRSRMHT QSRQKSYADVRRKDLEFE+GDKVFLKVAPM+AYRLAL
Sbjct: 24  MSPELVQSTNEAIQKIRSRMHTTQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRAYRLAL 83

Query: 61  PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
           PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVKTLRNK+I
Sbjct: 84  PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEI 143

Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
           PLVKVLW+NHRVEEATWEREDDMRSRYPELFEE
Sbjct: 144 PLVKVLWQNHRVEEATWEREDDMRSRYPELFEE 176

[Close]

BLAST of Pay0021846 vs. ExPASy TrEMBL
Match: A0A5A7TXT7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006400 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
            MG ELVQSTNEAIQKIRS MHTAQSRQKSYADVRRKDLEF++GDKVFLKVAPMKAYRLAL
Sbjct: 940  MGHELVQSTNEAIQKIRSHMHTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKAYRLAL 999

Query: 61   PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
            PPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY+EQPVEVLAREVK LRN++I
Sbjct: 1000 PPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYIEQPVEVLAREVKMLRNREI 1059

Query: 121  PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
            PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Sbjct: 1060 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 1092

[Close]

BLAST of Pay0021846 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.6e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK      
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327

Query: 61   ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                                  AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 1328 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 1387

Query: 121  EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
            EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 1388 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 1447

[Close]

BLAST of Pay0021846 vs. ExPASy TrEMBL
Match: A0A5A7UMF1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2720G00010 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.6e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK      
Sbjct: 88  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 147

Query: 61  ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                                 AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207

Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
           EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267

[Close]

BLAST of Pay0021846 vs. NCBI nr
Match: KAA0068212.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL
Sbjct: 210 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 269

Query: 61  PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
           PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNK+I
Sbjct: 270 PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEI 329

Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFE 153
            LVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 330 SLVKVLWRNHRVEEATWEREDDMRSRYPELFE 361

[Close]

BLAST of Pay0021846 vs. NCBI nr
Match: TYK08899.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 146/153 (95.42%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
           M PELVQSTNEAIQKIRSRMHT QSRQKSYADVRRKDLEFE+GDKVFLKVAPM+AYRLAL
Sbjct: 24  MSPELVQSTNEAIQKIRSRMHTTQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRAYRLAL 83

Query: 61  PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
           PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY EQPVEVLAREVKTLRNK+I
Sbjct: 84  PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEI 143

Query: 121 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
           PLVKVLW+NHRVEEATWEREDDMRSRYPELFEE
Sbjct: 144 PLVKVLWQNHRVEEATWEREDDMRSRYPELFEE 176

[Close]

BLAST of Pay0021846 vs. NCBI nr
Match: KAA0046059.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKAYRLAL 60
            MG ELVQSTNEAIQKIRS MHTAQSRQKSYADVRRKDLEF++GDKVFLKVAPMKAYRLAL
Sbjct: 940  MGHELVQSTNEAIQKIRSHMHTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKAYRLAL 999

Query: 61   PPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQI 120
            PPSLS VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSY+EQPVEVLAREVK LRN++I
Sbjct: 1000 PPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYIEQPVEVLAREVKMLRNREI 1059

Query: 121  PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 154
            PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE
Sbjct: 1060 PLVKVLWRNHRVEEATWEREDDMRSRYPELFEE 1092

[Close]

BLAST of Pay0021846 vs. NCBI nr
Match: KAA0054731.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.3 bits (734), Expect = 7.5e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK      
Sbjct: 88  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 147

Query: 61  ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                                 AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 148 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 207

Query: 121 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
           EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 208 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 267

[Close]

BLAST of Pay0021846 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.3 bits (734), Expect = 7.5e-74
Identity = 153/181 (84.53%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK------ 60
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMK      
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327

Query: 61   ----------------------AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 120
                                  AYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL
Sbjct: 1328 RRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPL 1387

Query: 121  EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 154
            EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Sbjct: 1388 EIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE 1447

The following BLAST results are available for this feature:

BLAST of Pay0021846 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0021846 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIQ0	6.0e-77	98.68	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15212G00010 ...	[more]
A0A5D3CF08	8.7e-76	95.42	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00070 PE...	[more]
A0A5A7TXT7	1.6e-74	94.12	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U7V9	3.6e-74	84.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UMF1	3.6e-74	84.53	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2720G00010 P...	[more]

BLAST of Pay0021846 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068212.1	1.2e-76	98.68	pol protein [Cucumis melo var. makuwa]	[more]
TYK08899.1	1.8e-75	95.42	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046059.1	3.4e-74	94.12	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054731.1	7.5e-74	84.53	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	7.5e-74	84.53	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0021846 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF11	CCHC-TYPE INTEGRASE	coord: 13..149
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 13..149
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 65..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0021846.1	Pay0021846.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding